Rw5G045510

PPR repeat

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
79525331 .. 79526965
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G045510.1

Sequence Viewer

Length: 1635 bp
ATGGCTGCTGTTGCTCCTCCATCACTTCCCAACCAGAACAAATTACCATCCTTCTCGTCGAGAATTCTAGCTGGAATGCCGGCCCCCGTCGTTTTGCTTCAAATGTGCAGCAACTTTCAAGAAGTAAGACAAGTTCATGCTCAATTGGTTGTATCAGGACTAATTGAGCGCCCTATAAATGGTGGGAGGCTTCTTCAGGCCTATGTCAGAGTGTCAAACTTTAACTATGCATTATCAACTTTTGATAGCATATCTAATCCTGATGTGTTTGCCTACAATACCATGATGAGAGGTTTAATACTGGGTAAGTCCCCTTATCATGCACTGAAGCTCTATAGTAGGCTTTTACTAGATGGTTTAAAACCAGACAATTACACCTACACCTTTGTTCTCAAAGCATGTTCCCAAGTGAATGCGCTCTTCGAAGGTAGAGAAGTGCATGGCCGGATAATTAAGGCCGGAATAGCACCAGATACTTACATTCATAGTTCACTGATAAACATGTACTCGAGTTCATCAGATGGTTTGGTCTGTGCAGAGCGAGTTTTAGCTGGCTTTTCCGAGGATAACACACTTGCTAAGAACTCCTTGATTTCGGGTTACCTCAGTCAGGGTCAGGTAGAAAGTGCTAGAAAAATGTTCGATAACCTGGTAGCAAAGGATGATGCATCTTGGAGTGCAATGGTAGCAGGGTACACAAAGAATTGTATGTATGCAGAGGCATTAGTCATCTTTCGAAAGATGTTGAGTTCTCAAGTTTCTCCAAATGAATCAGCACTTGTGAGCTCATTGTGTGCTTGTGCTAATTTGGGAGCACTAGACCAAGGCAAATGGATACATGCATACATTGATAGAATTGGGGCTAGGATTAGTGTCACTGTGGGTACTGCTCTTATAGACATGTATGCAAAGTGTGGCAGCATAGAAAATGCCTATGAAGTTTTCAGGAAGATGCCACAGAAAGACGTAGTTTCATGGGGAGCTATCATTTCTGGTTTCGCCATTCATGGGCGAGCTGCAAAATGTTTTGAATTGTTTGATGATATGGTTGCTGGTGGAATTCACCCAAATGAAGTAATTTTTGTAGGTATTTTATCGGCTTGTTCTCATGCCGGGTATGTTGAAACAGGATACAAGTACTTTGACCAAATGGTTTATCATTATGGGATAAAACCATCCATTGAACATTATGGATGCATGGTGGATCTTCTTGGTCGTGCAGGGCGGCTGGCAGAGGCAGAAGGGTTCATCATGTCAATGCCGGAACAGCCTAACTCGGTTATATGGGGTGCATTTCTTGGTGCTTGTAGAATGTACAGTGACGTGAGGAGAGGTAACCTTGCTTTCAAGCACTTGACTGATCTTGAACCAACGTCTGGTGACAGATACAAACTTGCAGGAATTATGTTTGCTAATGCTGGGGAAAAGGAAAATGCTACTAAAATTAGGACGATCATCACAGATAATGACTTGGAGACAACTCGTGGAGTAAGCTCAATTGAGATAGATGGTGTAGTCCACGAGTTTGTAGCAGGTACCATCAACCATAGCAGGCACAAAGAAATTTACAGAATGTGGGAGAGGGTTAATAGGTTATTAGAAATCCATGAGCTTGAAATTTGCATTCCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

544

Amino Acids

60.01

Weight (kDa)

6.73

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 87 - 135 1.4e-09 PPR repeat family
PPR_2 PF13041 321 - 369 8.2e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013877)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1523
Acc65I GGTACC 1 cut(s) 1535
AccB1I GGYRCC 1 cut(s) 1535
AccB7I CCANNNNNTGG 1 cut(s) 1376
AciI CCGC 1 cut(s) 1225
AclWI GGATC 1 cut(s) 1212
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 4 cut(s) 63, 1059, 1563, 1617
AcuI CTGAAG 2 cut(s) 179, 347
AfaI GTAC 6 cut(s) 506, 695, 886, 1139, 1316, 1537
AfiI CCNNNNNNNGG 4 cut(s) 179, 610, 1008, 1376
AflIII ACRYGT 2 cut(s) 501, 900
AgsI TTSAA 8 cut(s) 101, 119, 1031, 1124, 1184, 1348, 1367, 1616
AjiI CACGTC 1 cut(s) 1324
AjnI CCWGG 1 cut(s) 648
AluBI AGCT 8 cut(s) 71, 331, 551, 786, 983, 1016, 1494, 1612
AluI AGCT 8 cut(s) 71, 331, 551, 786, 983, 1016, 1494, 1612
Alw21I GWGCWC 2 cut(s) 788, 817
Alw26I GTCTC 1 cut(s) 1469
AlwI GGATC 1 cut(s) 1212
Ama87I CYCGRG 1 cut(s) 508
AoxI GGCC 4 cut(s) 81, 198, 442, 456
ApeKI GCWGC 4 cut(s) 5, 108, 918, 1016
ApoI RAATTY 4 cut(s) 63, 1059, 1563, 1617
Asp718I GGTACC 1 cut(s) 1535
AspLEI GCGC 2 cut(s) 171, 418
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 1114
AsuHPI GGTGA 2 cut(s) 1055, 1391
AsuII TTCGAA 2 cut(s) 423, 736
AvaI CYCGRG 1 cut(s) 508
BanI GGYRCC 1 cut(s) 1535
BanII GRGCYC 1 cut(s) 788
BauI CACGAG 2 cut(s) 1482, 1520
Bbv12I GWGCWC 2 cut(s) 788, 817
BbvI GCAGC 3 cut(s) 120, 930, 1003
BccI CCATC 7 cut(s) 28, 55, 347, 515, 1183, 1502, 1547
BciT130I CCWGG 1 cut(s) 650
BciVI GTATCC 2 cut(s) 828, 1124
BcnI CCSGG 1 cut(s) 1114
BcoDI GTCTC 1 cut(s) 1469
BfaI CTAG 6 cut(s) 68, 350, 630, 818, 864, 1633
BfmI CTRYAG 1 cut(s) 334
BfoI RGCGCY 1 cut(s) 172
BfuAI ACCTGC 1 cut(s) 1523
BfuI GTATCC 2 cut(s) 828, 1124
BisI GCNGC 5 cut(s) 6, 109, 919, 1017, 1226
BlsI GCNGC 5 cut(s) 7, 110, 920, 1018, 1227
BmcAI AGTACT 1 cut(s) 1139
Bme1390I CCNGG 2 cut(s) 650, 1114
BmeT110I CYCGRG 1 cut(s) 508
BmgBI CACGTC 1 cut(s) 1324
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 2 cut(s) 84, 1537
BmrFI CCNGG 2 cut(s) 650, 1114
BmrI ACTGGG 1 cut(s) 311
BmsI GCATC 4 cut(s) 655, 677, 942, 1184
BmuI ACTGGG 1 cut(s) 311
Bpu14I TTCGAA 2 cut(s) 423, 736
BpuEI CTTGAG 1 cut(s) 738
BpuMI CCSGG 1 cut(s) 1114
BsaJI CCNNGG 2 cut(s) 561, 823
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 610, 1008, 1376
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 687
BseBI CCWGG 1 cut(s) 650
BseDI CCNNGG 2 cut(s) 561, 823
BseGI GGATG 4 cut(s) 47, 667, 1175, 1199
BseLI CCNNNNNNNGG 4 cut(s) 179, 610, 1008, 1376
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 1 cut(s) 619
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 2 cut(s) 6, 1342
BseXI GCAGC 3 cut(s) 120, 930, 1003
BseYI CCCAGC 1 cut(s) 1418
BsgI GTGCAG 3 cut(s) 127, 555, 1239
BshFI GGCC 4 cut(s) 83, 200, 444, 458
BshNI GGYRCC 1 cut(s) 1535
BsiHKAI GWGCWC 2 cut(s) 788, 817
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 5 cut(s) 80, 445, 459, 1113, 1262
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 4 cut(s) 179, 610, 1008, 1376
BsmAI GTCTC 1 cut(s) 1469
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 3 cut(s) 81, 418, 1623
BsnI GGCC 4 cut(s) 83, 200, 444, 458
BsoBI CYCGRG 1 cut(s) 508
Bsp119I TTCGAA 2 cut(s) 423, 736
Bsp1286I GDGCHC 2 cut(s) 788, 817
Bsp1407I TGTACA 1 cut(s) 1314
Bsp143I GATC 3 cut(s) 1204, 1360, 1452
BspACI CCGC 1 cut(s) 1225
BspANI GGCC 4 cut(s) 83, 200, 444, 458
BspCNI CTCAG 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 84, 1537
BspMI ACCTGC 1 cut(s) 1523
BspPI GGATC 1 cut(s) 1212
BspQI GCTCTTC 1 cut(s) 425
BspT104I TTCGAA 2 cut(s) 423, 736
BspT107I GGYRCC 1 cut(s) 1535
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 79
BsrGI TGTACA 1 cut(s) 1314
BsrI ACTGG 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 561, 823
BssMI GATC 3 cut(s) 1204, 1360, 1452
BssSI CACGAG 2 cut(s) 1482, 1520
BssT1I CCWWGG 1 cut(s) 823
Bst2BI CACGAG 2 cut(s) 1482, 1520
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 2 cut(s) 880, 1319
Bst6I CTCTTC 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 1314
BstBI TTCGAA 2 cut(s) 423, 736
BstC8I GCNNGC 5 cut(s) 81, 553, 1014, 1230, 1553
BstDEI CTNAG 2 cut(s) 579, 605
BstEII GGTNACC 2 cut(s) 599, 1334
BstENI CCTNNNNNAGG 1 cut(s) 608
BstF5I GGATG 4 cut(s) 47, 667, 1175, 1199
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 2 cut(s) 171, 418
BstKTI GATC 3 cut(s) 1207, 1363, 1455
BstMAI GTCTC 1 cut(s) 1469
BstMBI GATC 3 cut(s) 1204, 1360, 1452
BstMWI GCNNNNNNNGC 4 cut(s) 11, 464, 686, 1267
BstNI CCWGG 1 cut(s) 650
BstNSI RCATGY 4 cut(s) 402, 505, 842, 904
BstPI GGTNACC 2 cut(s) 599, 1334
BstSCI CCNGG 2 cut(s) 648, 1112
BstSFI CTRYAG 1 cut(s) 334
BstV1I GCAGC 3 cut(s) 120, 930, 1003
BstX2I RGATCY 1 cut(s) 1204
BstYI RGATCY 1 cut(s) 1204
BsuI GTATCC 2 cut(s) 828, 1124
BsuRI GGCC 4 cut(s) 83, 200, 444, 458
BtrI CACGTC 1 cut(s) 1324
BtsCI GGATG 4 cut(s) 47, 667, 1175, 1199
BtsIMutI CAGTG 4 cut(s) 323, 491, 876, 1324
BveI ACCTGC 1 cut(s) 1523
Cac8I GCNNGC 5 cut(s) 81, 553, 1014, 1230, 1553
CfoI GCGC 2 cut(s) 171, 418
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 82
CsiI ACCWGGT 1 cut(s) 648
Csp6I GTAC 6 cut(s) 505, 694, 885, 1138, 1315, 1536
CviQI GTAC 6 cut(s) 505, 694, 885, 1138, 1315, 1536
DdeI CTNAG 2 cut(s) 579, 605
DpnI GATC 3 cut(s) 1206, 1362, 1454
DpnII GATC 3 cut(s) 1204, 1360, 1452
DraI TTTAAA 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Ecl136II GAGCTC 1 cut(s) 786
Eco130I CCWWGG 1 cut(s) 823
Eco147I AGGCCT 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 788
Eco53kI GAGCTC 1 cut(s) 786
Eco57I CTGAAG 2 cut(s) 179, 347
Eco88I CYCGRG 1 cut(s) 508
Eco91I GGTNACC 2 cut(s) 599, 1334
EcoICRI GAGCTC 1 cut(s) 786
EcoNI CCTNNNNNAGG 1 cut(s) 608
EcoO65I GGTNACC 2 cut(s) 599, 1334
EcoRI GAATTC 2 cut(s) 63, 1059
EcoRII CCWGG 1 cut(s) 648
EcoT14I CCWWGG 1 cut(s) 823
EcoT22I ATGCAT 4 cut(s) 232, 670, 844, 1199
EcoT38I GRGCYC 1 cut(s) 788
ErhI CCWWGG 1 cut(s) 823
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FaqI GGGAC 1 cut(s) 295
Fnu4HI GCNGC 5 cut(s) 6, 109, 919, 1017, 1226
FokI GGATG 4 cut(s) 34, 674, 1162, 1206
FriOI GRGCYC 1 cut(s) 788
Fsp4HI GCNGC 5 cut(s) 6, 109, 919, 1017, 1226
FspBI CTAG 6 cut(s) 68, 350, 630, 818, 864, 1633
GlaI GCGC 2 cut(s) 170, 417
GluI GCNGC 5 cut(s) 6, 109, 919, 1017, 1226
GsaI CCCAGC 1 cut(s) 1422
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 4 cut(s) 83, 200, 444, 458
HapII CCGG 5 cut(s) 80, 445, 459, 1113, 1262
HhaI GCGC 2 cut(s) 171, 418
Hin6I GCGC 2 cut(s) 169, 416
HinP1I GCGC 2 cut(s) 169, 416
HinfI GANTC 1 cut(s) 770
HpaII CCGG 5 cut(s) 80, 445, 459, 1113, 1262
HphI GGTGA 2 cut(s) 1055, 1391
Hpy166II GTNNAC 3 cut(s) 491, 696, 1519
Hpy188I TCNGA 3 cut(s) 209, 520, 562
Hpy188III TCNNGA 6 cut(s) 60, 119, 156, 260, 946, 1364
Hpy8I GTNNAC 3 cut(s) 491, 696, 1519
Hpy99I CGWCG 2 cut(s) 61, 92
HpyAV CCTTC 3 cut(s) 61, 419, 1235
HpyCH4III ACNGT 2 cut(s) 880, 1319
HpyCH4IV ACGT 3 cut(s) 966, 1323, 1373
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 464, 686, 1267
HpyF3I CTNAG 2 cut(s) 579, 605
HpySE526I ACGT 3 cut(s) 966, 1323, 1373
HspAI GCGC 2 cut(s) 169, 416
KpnI GGTACC 1 cut(s) 1539
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
Kzo9I GATC 3 cut(s) 1204, 1360, 1452
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 3 cut(s) 19, 812, 980
Lsp1109I GCAGC 3 cut(s) 120, 930, 1003
LweI GCATC 4 cut(s) 655, 677, 942, 1184
MabI ACCWGGT 1 cut(s) 648
MaeI CTAG 6 cut(s) 68, 350, 630, 818, 864, 1633
MaeII ACGT 3 cut(s) 966, 1323, 1373
MaeIII GTNAC 5 cut(s) 599, 874, 1319, 1334, 1379
MalI GATC 3 cut(s) 1206, 1362, 1454
MboI GATC 3 cut(s) 1204, 1360, 1452
MboII GAAGA 4 cut(s) 185, 412, 961, 1199
MfeI CAATTG 2 cut(s) 143, 1497
MflI RGATCY 1 cut(s) 1204
MhlI GDGCHC 2 cut(s) 788, 817
Mph1103I ATGCAT 4 cut(s) 232, 670, 844, 1199
MroNI GCCGGC 1 cut(s) 79
MseI TTAA 5 cut(s) 222, 296, 359, 453, 1587
MslI CAYNNNNRTG 2 cut(s) 1068, 1256
MspI CCGG 5 cut(s) 80, 445, 459, 1113, 1262
MspR9I CCNGG 2 cut(s) 650, 1114
MunI CAATTG 2 cut(s) 143, 1497
Mva1269I GAATGC 3 cut(s) 81, 418, 1623
MvaI CCWGG 1 cut(s) 650
MwoI GCNNNNNNNGC 4 cut(s) 11, 464, 686, 1267
NaeI GCCGGC 1 cut(s) 81
NciI CCSGG 1 cut(s) 1114
NdeII GATC 3 cut(s) 1204, 1360, 1452
NgoMIV GCCGGC 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 84, 1537
NmuCI GTSAC 3 cut(s) 874, 1319, 1379
NsiI ATGCAT 4 cut(s) 232, 670, 844, 1199
NspI RCATGY 4 cut(s) 402, 505, 842, 904
NspV TTCGAA 2 cut(s) 423, 736
PaeR7I CTCGAG 1 cut(s) 508
PceI AGGCCT 1 cut(s) 200
PciI ACATGT 2 cut(s) 501, 900
PciSI GCTCTTC 1 cut(s) 425
PctI GAATGC 3 cut(s) 81, 418, 1623
PdiI GCCGGC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 770
PflMI CCANNNNNTGG 1 cut(s) 1376
PkrI GCNGC 5 cut(s) 7, 110, 920, 1018, 1227
PscI ACATGT 2 cut(s) 501, 900
Psp124BI GAGCTC 1 cut(s) 788
Psp6I CCWGG 1 cut(s) 648
PspEI GGTNACC 2 cut(s) 599, 1334
PspFI CCCAGC 1 cut(s) 1418
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 2 cut(s) 84, 1537
PspPI GGNCC 1 cut(s) 82
PspXI VCTCGAGB 1 cut(s) 508
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
PsuI RGATCY 1 cut(s) 1204
RsaI GTAC 6 cut(s) 506, 695, 886, 1139, 1316, 1537
RsaNI GTAC 6 cut(s) 505, 694, 885, 1138, 1315, 1536
RseI CAYNNNNRTG 2 cut(s) 1068, 1256
SacI GAGCTC 1 cut(s) 788
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 5 cut(s) 222, 296, 359, 453, 1587
SatI GCNGC 5 cut(s) 6, 109, 919, 1017, 1226
Sau3AI GATC 3 cut(s) 1204, 1360, 1452
Sau96I GGNCC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 1139
ScrFI CCNGG 2 cut(s) 650, 1114
SduI GDGCHC 2 cut(s) 788, 817
SexAI ACCWGGT 1 cut(s) 648
SfaNI GCATC 4 cut(s) 655, 677, 942, 1184
SfcI CTRYAG 1 cut(s) 334
Sfr274I CTCGAG 1 cut(s) 508
SfuI TTCGAA 2 cut(s) 423, 736
SlaI CTCGAG 1 cut(s) 508
SmiMI CAYNNNNRTG 2 cut(s) 1068, 1256
SmlI CTYRAG 2 cut(s) 508, 753
SmoI CTYRAG 2 cut(s) 508, 753
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 1 cut(s) 1225
SspMI CTAG 6 cut(s) 68, 350, 630, 818, 864, 1633
SstI GAGCTC 1 cut(s) 788
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 648, 1112
StyI CCWWGG 1 cut(s) 823
TaaI ACNGT 2 cut(s) 880, 1319
TaiI ACGT 3 cut(s) 969, 1326, 1376
TaqI TCGA 5 cut(s) 59, 423, 509, 642, 736
TatI WGTACW 3 cut(s) 504, 1137, 1314
TauI GCSGC 1 cut(s) 1228
TfiI GAWTC 1 cut(s) 770
Tru1I TTAA 5 cut(s) 222, 296, 359, 453, 1587
Tru9I TTAA 5 cut(s) 222, 296, 359, 453, 1587
TscAI CASTG 4 cut(s) 330, 498, 883, 1324
TseFI GTSAC 3 cut(s) 874, 1319, 1379
TseI GCWGC 4 cut(s) 5, 108, 918, 1016
Tsp45I GTSAC 3 cut(s) 874, 1319, 1379
TspDTI ATGAA 9 cut(s) 125, 473, 504, 783, 951, 963, 995, 1086, 1237
TspRI CASTG 4 cut(s) 330, 498, 883, 1324
Van91I CCANNNNNTGG 1 cut(s) 1376
XagI CCTNNNNNAGG 1 cut(s) 608
XapI RAATTY 4 cut(s) 63, 1059, 1563, 1617
XceI RCATGY 4 cut(s) 402, 505, 842, 904
XhoI CTCGAG 1 cut(s) 508
XspI CTAG 6 cut(s) 68, 350, 630, 818, 864, 1633
ZrmI AGTACT 1 cut(s) 1139
Zsp2I ATGCAT 4 cut(s) 232, 670, 844, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.