Prupe.6G034000_v2.0.a1

PPR repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013877
Physical Location & Seq
Forward (+)
2576073 .. 2577602
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G034000.1

Sequence Viewer

Length: 1467 bp
ATGCCAACCACTCTGGTTTTTCTTCGAATGTGTAGCAACTTCTTGGAAGTAAGACAAGTACATGCTCAATTAGTTGTATCAGGACTGCTTGACCGCCCTCCAAATGCAGGGAGGCTTCTTCAGTCCTATGTTACAGTGTCACAAATTTACCATGCCTCATCAGTTTTCGATAGAATATCTTGTCCTGATGTATTTGCCTACAATAACATGATCAGAGGATTGATACTGGACAGTTACACTTATGCCTTTGTTCTTAAAGCATGTTCCCAACTGAGTGCAATCTTTGAAGGTAGACAAGTGCATTGCCGGATAGTTAAGGCCGGCACAGCAATGGATACACACGTTCATAGCTCACTAATACACATGTACTCGAGTTCAACGGACAGTTTGGTCTGTGCAGAACAAGTTCTTGCAGGCTTCCCTGAAGAGAACACGATTGCGAAGAACTCGTTGATTTCAGGGTACCTCAGTCAGGGTGAAGTAGAGAAGGCTAGAGAAATGTTTGATAACATGGTACAAAAGGATGACGCATCTTGGAGCGCAATGATAGCAGGGTACACAAAGAATGGTATGTCTGCAGAAGCATTAGGCCTCTTTCAGAAGATGATGACGATTTCCGAAGTTTCTCCAAATGAGGCAACCCTTGTGAGCTCATTGTCTGCCTGTGCTCATTTGGGAGCTTTAGACCAAGGAAAATGGATACATGCATATGCTGATAAAATTGGGGCTAAGATTAGTGTCACTCTTGGTACTGCTCTCATAGACATGTATGCCAAATGTGGCAGCATTGAACATGGCTATGAAGTCTTTAAGAAGATGCCACAAAAAGATTTAGTTGCTTGGGGGGTTATTATTTCTGGTTTTGCCATACACGGGCAAGCTGAAAAGTGCTTTGAACTGTTTGATGACATGGTTGCTAATGGAACTTATCCGAATGAGATAATTTTTGTGGCTATTTTATCTGCTTGCTCCCATGCCGGCTATGTTGAAATGGGATATCAGTACTTTTATCAAATGGTGCATGAGTATGGGATAAGACCATCCATTGAACATTATGGATGCATGGTGGACCTTCTTGGCCGTGCCGGGCGGCTGGCTGAGGCGGAAGAACTTATCATGTCACTGCCAGAAAAGCCCAATTCGGTTATATGGGGTGCGTTACTTGGTGCCTGTAGGATGCACAATGACCTGAGGAGAGGGAACCTTGCTTTCAAGCACTTGACTGAACTTGAGCCAATGTCTGGCGACAGATATAAACTTGCAGGGCTTATGTTCGCTAAGGCTGGGGAAAAGGAAACTGCAACTAAAATTACGAAGCTCATCAGAGAAAATAACTTGGAGACAACTCGTGGACTGAGCTTCATTGAAATTGATGGTGTGGTCCATGACTTTGAAGCAGGGACTATTAATCATAGCAAGTACAATGAAATCTACAAGATGTGGGGGGAAGGGTTAATAGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

489

Amino Acids

54.08

Weight (kDa)

5.8

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013877)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28280 AT4G28280 AT4G28280
malus_domestica MD03G1042100.v1.1 MD11G1044400.v1.1 MD11G1045000.v1.1
prunus_persica Prupe.6G034000_v2.0.a1
pyrus_communis pycom03g03260
rosa_chinensis RchiOBHm_Chr5g0074761
rosa_laevigata RLG00000036502
rosa_multiflora Rmu_sc0000909.1_g000018
rosa_roxburghii Rroxscaffold_1G00006820
rosa_rugosa Rorug05G0433700
rosa_samantha Rh5AG491400 Rh5BG512800 Rh5CG536500
rosa_wichuraiana Rw5G045510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 2 cut(s) 462, 1166
AccB7I CCANNNNNTGG 1 cut(s) 1241
AccI GTMKAC 1 cut(s) 292
AciI CCGC 3 cut(s) 94, 1090, 1103
AcoI YGGCCR 1 cut(s) 1078
AcsI RAATTY 1 cut(s) 144
AcuI CTGAAG 2 cut(s) 104, 444
AfaI GTAC 8 cut(s) 60, 368, 464, 516, 557, 751, 1004, 1421
AfiI CCNNNNNNNGG 4 cut(s) 107, 472, 873, 1241
AflIII ACRYGT 3 cut(s) 340, 363, 765
AgsI TTSAA 9 cut(s) 287, 378, 791, 896, 989, 1049, 1213, 1367, 1394
AluBI AGCT 6 cut(s) 351, 651, 680, 881, 1318, 1359
AluI AGCT 6 cut(s) 351, 651, 680, 881, 1318, 1359
Alw21I GWGCWC 2 cut(s) 653, 670
Alw26I GTCTC 1 cut(s) 1334
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 3 cut(s) 318, 589, 1078
ApeKI GCWGC 1 cut(s) 783
ApoI RAATTY 1 cut(s) 144
AseI ATTAAT 1 cut(s) 1407
Asp700I GAANNNNTTC 1 cut(s) 405
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 2 cut(s) 1069, 1381
AsuC2I CCSGG 1 cut(s) 1087
AsuHPI GGTGA 1 cut(s) 488
AsuII TTCGAA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 2 cut(s) 1069, 1381
AxyI CCTNAGG 1 cut(s) 1190
BaeI ACNNNNGTAYC 4 cut(s) 327, 360, 454, 487
BanI GGYRCC 2 cut(s) 462, 1166
BanII GRGCYC 1 cut(s) 653
BauI CACGAG 1 cut(s) 1347
Bbv12I GWGCWC 2 cut(s) 653, 670
BbvCI CCTCAGC 1 cut(s) 1098
BbvI GCAGC 1 cut(s) 795
BccI CCATC 2 cut(s) 1048, 1367
BceAI ACGGC 1 cut(s) 1065
BciVI GTATCC 2 cut(s) 328, 693
BclI TGATCA 1 cut(s) 210
BcnI CCSGG 1 cut(s) 1087
BcoDI GTCTC 1 cut(s) 1334
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 2 cut(s) 576, 1171
BfuI GTATCC 2 cut(s) 328, 693
BisI GCNGC 2 cut(s) 784, 1091
BlsI GCNGC 2 cut(s) 785, 1092
BmcAI AGTACT 1 cut(s) 1004
Bme1390I CCNGG 1 cut(s) 1087
Bme18I GGWCC 2 cut(s) 1069, 1381
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 1069, 1381
BmiI GGNNCC 3 cut(s) 464, 1168, 1202
BmrFI CCNGG 1 cut(s) 1087
BmsI GCATC 4 cut(s) 539, 807, 1049, 1167
Bpu10I CCTNAGC 2 cut(s) 1098, 1278
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 1250
BpuMI CCSGG 1 cut(s) 1087
BsaJI CCNNGG 1 cut(s) 688
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 472, 873, 1241
Bse118I RCCGGY 2 cut(s) 320, 977
Bse1I ACTGG 1 cut(s) 231
Bse21I CCTNAGG 1 cut(s) 1190
Bse3DI GCAATG 3 cut(s) 301, 336, 549
BseDI CCNNGG 1 cut(s) 688
BseGI GGATG 4 cut(s) 529, 1040, 1064, 1182
BseLI CCNNNNNNNGG 4 cut(s) 107, 472, 873, 1241
BseMI GCAATG 3 cut(s) 301, 336, 549
BseMII CTCAG 5 cut(s) 263, 481, 1089, 1181, 1346
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 1207
BseXI GCAGC 1 cut(s) 795
BseYI CCCAGC 1 cut(s) 1283
BsgI GTGCAG 1 cut(s) 417
BshFI GGCC 3 cut(s) 320, 591, 1080
BshNI GGYRCC 2 cut(s) 462, 1166
BsiHKAI GWGCWC 2 cut(s) 653, 670
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 4 cut(s) 307, 321, 978, 1086
BslFI GGGAC 1 cut(s) 1414
BslI CCNNNNNNNGG 4 cut(s) 107, 472, 873, 1241
BsmAI GTCTC 1 cut(s) 1334
BsmFI GGGAC 1 cut(s) 1414
BsnI GGCC 3 cut(s) 320, 591, 1080
BsoBI CYCGRG 1 cut(s) 370
Bsp119I TTCGAA 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 653, 670
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 3 cut(s) 94, 1090, 1103
BspANI GGCC 3 cut(s) 320, 591, 1080
BspCNI CTCAG 5 cut(s) 264, 480, 1090, 1182, 1347
BspLI GGNNCC 3 cut(s) 464, 1168, 1202
BspMAI CTGCAG 1 cut(s) 580
BspT104I TTCGAA 1 cut(s) 25
BspT107I GGYRCC 2 cut(s) 462, 1166
BsrDI GCAATG 3 cut(s) 301, 336, 549
BsrFI RCCGGY 2 cut(s) 320, 977
BsrI ACTGG 1 cut(s) 231
BssAI RCCGGY 2 cut(s) 320, 977
BssECI CCNNGG 1 cut(s) 688
BssMI GATC 1 cut(s) 210
BssSI CACGAG 1 cut(s) 1347
BssT1I CCWWGG 1 cut(s) 688
Bst2BI CACGAG 1 cut(s) 1347
Bst4CI ACNGT 4 cut(s) 136, 233, 386, 900
Bst6I CTCTTC 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 25
BstC8I GCNNGC 6 cut(s) 322, 415, 879, 967, 979, 1095
BstDEI CTNAG 7 cut(s) 272, 467, 729, 1098, 1190, 1278, 1355
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 4 cut(s) 529, 1040, 1064, 1182
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 1334
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 3 cut(s) 326, 548, 1132
BstNSI RCATGY 5 cut(s) 65, 264, 367, 707, 769
BstSCI CCNGG 1 cut(s) 1085
BstSFI CTRYAG 2 cut(s) 576, 1171
BstV1I GCAGC 1 cut(s) 795
Bsu36I CCTNAGG 1 cut(s) 1190
BsuI GTATCC 2 cut(s) 328, 693
BsuRI GGCC 3 cut(s) 320, 591, 1080
BtsCI GGATG 4 cut(s) 529, 1040, 1064, 1182
BtsI GCAGTG 1 cut(s) 1121
BtsIMutI CAGTG 2 cut(s) 141, 1121
Cac8I GCNNGC 6 cut(s) 322, 415, 879, 967, 979, 1095
CfoI GCGC 1 cut(s) 542
Cfr10I RCCGGY 2 cut(s) 320, 977
Cfr13I GGNCC 2 cut(s) 1069, 1381
CseI GACGC 1 cut(s) 536
Csp6I GTAC 8 cut(s) 59, 367, 463, 515, 556, 750, 1003, 1420
CviQI GTAC 8 cut(s) 59, 367, 463, 515, 556, 750, 1003, 1420
DdeI CTNAG 7 cut(s) 272, 467, 729, 1098, 1190, 1278, 1355
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 1078
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
EciI GGCGGA 1 cut(s) 1118
Ecl136II GAGCTC 1 cut(s) 651
Eco130I CCWWGG 1 cut(s) 688
Eco147I AGGCCT 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 653
Eco32I GATATC 1 cut(s) 998
Eco47I GGWCC 2 cut(s) 1069, 1381
Eco53kI GAGCTC 1 cut(s) 651
Eco57I CTGAAG 2 cut(s) 104, 444
Eco81I CCTNAGG 1 cut(s) 1190
Eco88I CYCGRG 1 cut(s) 370
EcoICRI GAGCTC 1 cut(s) 651
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRV GATATC 1 cut(s) 998
EcoT14I CCWWGG 1 cut(s) 688
EcoT22I ATGCAT 2 cut(s) 709, 1064
EcoT38I GRGCYC 1 cut(s) 653
ErhI CCWWGG 1 cut(s) 688
FaqI GGGAC 1 cut(s) 1414
FauNDI CATATG 1 cut(s) 709
FbaI TGATCA 1 cut(s) 210
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 2 cut(s) 784, 1091
FokI GGATG 4 cut(s) 536, 1027, 1071, 1189
FriOI GRGCYC 1 cut(s) 653
Fsp4HI GCNGC 2 cut(s) 784, 1091
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 541
GluI GCNGC 2 cut(s) 784, 1091
GsaI CCCAGC 1 cut(s) 1287
HaeIII GGCC 3 cut(s) 320, 591, 1080
HapII CCGG 4 cut(s) 307, 321, 978, 1086
HgaI GACGC 1 cut(s) 536
HhaI GCGC 1 cut(s) 542
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HpaII CCGG 4 cut(s) 307, 321, 978, 1086
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 4 cut(s) 293, 558, 1069, 1352
Hpy188I TCNGA 5 cut(s) 215, 600, 619, 933, 1325
Hpy188III TCNNGA 2 cut(s) 81, 185
Hpy8I GTNNAC 4 cut(s) 293, 558, 1069, 1352
HpyAV CCTTC 4 cut(s) 281, 481, 1082, 1442
HpyCH4III ACNGT 4 cut(s) 136, 233, 386, 900
HpyCH4IV ACGT 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 548, 1132
HpyF3I CTNAG 7 cut(s) 272, 467, 729, 1098, 1190, 1278, 1355
HpySE526I ACGT 1 cut(s) 342
HspAI GCGC 1 cut(s) 540
KpnI GGTACC 1 cut(s) 466
KroI GCCGGC 2 cut(s) 320, 977
KroNI GCCGGC 2 cut(s) 322, 979
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 3 cut(s) 537, 677, 974
Lsp1109I GCAGC 1 cut(s) 795
LweI GCATC 4 cut(s) 539, 807, 1049, 1167
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 6 cut(s) 130, 138, 233, 739, 1119, 1158
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 7 cut(s) 14, 110, 437, 454, 613, 826, 1118
MhlI GDGCHC 2 cut(s) 653, 670
MluCI AATT 7 cut(s) 68, 144, 720, 942, 1138, 1308, 1368
Mph1103I ATGCAT 2 cut(s) 709, 1064
MroNI GCCGGC 2 cut(s) 320, 977
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 5 cut(s) 255, 315, 810, 1407, 1454
MslI CAYNNNNRTG 5 cut(s) 329, 708, 764, 798, 1026
MspI CCGG 4 cut(s) 307, 321, 978, 1086
MspR9I CCNGG 1 cut(s) 1087
MwoI GCNNNNNNNGC 3 cut(s) 326, 548, 1132
NaeI GCCGGC 2 cut(s) 322, 979
NciI CCSGG 1 cut(s) 1087
NdeI CATATG 1 cut(s) 709
NdeII GATC 1 cut(s) 210
NgoMIV GCCGGC 2 cut(s) 320, 977
NlaIV GGNNCC 3 cut(s) 464, 1168, 1202
NmuCI GTSAC 3 cut(s) 138, 739, 1119
NsiI ATGCAT 2 cut(s) 709, 1064
NspI RCATGY 5 cut(s) 65, 264, 367, 707, 769
NspV TTCGAA 1 cut(s) 25
PaeR7I CTCGAG 1 cut(s) 370
PceI AGGCCT 1 cut(s) 591
PciI ACATGT 2 cut(s) 363, 765
PdiI GCCGGC 2 cut(s) 322, 979
PdmI GAANNNNTTC 1 cut(s) 405
PflMI CCANNNNNTGG 1 cut(s) 1241
PkrI GCNGC 2 cut(s) 785, 1092
PscI ACATGT 2 cut(s) 363, 765
PshBI ATTAAT 1 cut(s) 1407
Psp124BI GAGCTC 1 cut(s) 653
PspFI CCCAGC 1 cut(s) 1283
PspN4I GGNNCC 3 cut(s) 464, 1168, 1202
PspPI GGNCC 2 cut(s) 1069, 1381
PspXI VCTCGAGB 1 cut(s) 370
PstI CTGCAG 1 cut(s) 580
RsaI GTAC 8 cut(s) 60, 368, 464, 516, 557, 751, 1004, 1421
RsaNI GTAC 8 cut(s) 59, 367, 463, 515, 556, 750, 1003, 1420
RseI CAYNNNNRTG 5 cut(s) 329, 708, 764, 798, 1026
SacI GAGCTC 1 cut(s) 653
SaqAI TTAA 5 cut(s) 255, 315, 810, 1407, 1454
SatI GCNGC 2 cut(s) 784, 1091
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 2 cut(s) 1069, 1381
ScaI AGTACT 1 cut(s) 1004
ScrFI CCNGG 1 cut(s) 1087
SduI GDGCHC 2 cut(s) 653, 670
SfaNI GCATC 4 cut(s) 539, 807, 1049, 1167
SfcI CTRYAG 2 cut(s) 576, 1171
Sfr274I CTCGAG 1 cut(s) 370
SfuI TTCGAA 1 cut(s) 25
SinI GGWCC 2 cut(s) 1069, 1381
SlaI CTCGAG 1 cut(s) 370
SmiMI CAYNNNNRTG 5 cut(s) 329, 708, 764, 798, 1026
SmlI CTYRAG 2 cut(s) 370, 1229
SmoI CTYRAG 2 cut(s) 370, 1229
Sse9I AATT 7 cut(s) 68, 144, 720, 942, 1138, 1308, 1368
SseBI AGGCCT 1 cut(s) 591
SsiI CCGC 3 cut(s) 94, 1090, 1103
SspMI CTAG 1 cut(s) 492
SstI GAGCTC 1 cut(s) 653
StuI AGGCCT 1 cut(s) 591
StyD4I CCNGG 1 cut(s) 1085
StyI CCWWGG 1 cut(s) 688
TaaI ACNGT 4 cut(s) 136, 233, 386, 900
TaiI ACGT 1 cut(s) 345
TaqI TCGA 3 cut(s) 25, 168, 371
TasI AATT 7 cut(s) 68, 144, 720, 942, 1138, 1308, 1368
TatI WGTACW 4 cut(s) 58, 366, 1002, 1419
TauI GCSGC 1 cut(s) 1093
Tru1I TTAA 5 cut(s) 255, 315, 810, 1407, 1454
Tru9I TTAA 5 cut(s) 255, 315, 810, 1407, 1454
TscAI CASTG 2 cut(s) 141, 1128
TseFI GTSAC 3 cut(s) 138, 739, 1119
TseI GCWGC 1 cut(s) 783
Tsp45I GTSAC 3 cut(s) 138, 739, 1119
TspDTI ATGAA 4 cut(s) 335, 816, 1351, 1440
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 2 cut(s) 141, 1128
Van91I CCANNNNNTGG 1 cut(s) 1241
VpaK11BI GGWCC 2 cut(s) 1069, 1381
VspI ATTAAT 1 cut(s) 1407
XagI CCTNNNNNAGG 1 cut(s) 470
XapI RAATTY 1 cut(s) 144
XceI RCATGY 5 cut(s) 65, 264, 367, 707, 769
XhoI CTCGAG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 1 cut(s) 492
ZrmI AGTACT 1 cut(s) 1004
Zsp2I ATGCAT 2 cut(s) 709, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.