PPR repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G28280 AT4G28280 AT4G28280 |
| malus_domestica | MD03G1042100.v1.1 MD11G1044400.v1.1 MD11G1045000.v1.1 |
| prunus_persica | Prupe.6G034000_v2.0.a1 |
| pyrus_communis | pycom03g03260 |
| rosa_chinensis | RchiOBHm_Chr5g0074761 |
| rosa_laevigata | RLG00000036502 |
| rosa_multiflora | Rmu_sc0000909.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00006820 |
| rosa_rugosa | Rorug05G0433700 |
| rosa_samantha | Rh5AG491400 Rh5BG512800 Rh5CG536500 |
| rosa_wichuraiana | Rw5G045510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 233 |
| AciI | CCGC | 1 cut(s) | 336 |
| AcsI | RAATTY | 1 cut(s) | 165 |
| AdeI | CACNNNGTG | 1 cut(s) | 41 |
| AfaI | GTAC | 1 cut(s) | 30 |
| AgsI | TTSAA | 1 cut(s) | 70 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 276, 308 |
| ApoI | RAATTY | 1 cut(s) | 165 |
| AsuHPI | GGTGA | 1 cut(s) | 53 |
| AxyI | CCTNAGG | 1 cut(s) | 47 |
| BanI | GGYRCC | 1 cut(s) | 233 |
| BauI | CACGAG | 1 cut(s) | 204 |
| BccI | CCATC | 1 cut(s) | 224 |
| BceAI | ACGGC | 1 cut(s) | 221 |
| BfaI | CTAG | 1 cut(s) | 99 |
| BmiI | GGNNCC | 3 cut(s) | 59, 90, 235 |
| BpmI | CTGGAG | 1 cut(s) | 162 |
| Bse1I | ACTGG | 1 cut(s) | 90 |
| Bse21I | CCTNAGG | 1 cut(s) | 47 |
| BseGI | GGATG | 1 cut(s) | 216 |
| BseMII | CTCAG | 1 cut(s) | 38 |
| BseNI | ACTGG | 1 cut(s) | 90 |
| BseRI | GAGGAG | 1 cut(s) | 64 |
| BshNI | GGYRCC | 1 cut(s) | 233 |
| Bsp143I | GATC | 1 cut(s) | 325 |
| BspACI | CCGC | 1 cut(s) | 336 |
| BspCNI | CTCAG | 1 cut(s) | 39 |
| BspLI | GGNNCC | 3 cut(s) | 59, 90, 235 |
| BspT107I | GGYRCC | 1 cut(s) | 233 |
| BsrI | ACTGG | 1 cut(s) | 90 |
| BssMI | GATC | 1 cut(s) | 325 |
| BssSI | CACGAG | 1 cut(s) | 204 |
| Bst2BI | CACGAG | 1 cut(s) | 204 |
| BstC8I | GCNNGC | 1 cut(s) | 275 |
| BstDEI | CTNAG | 1 cut(s) | 47 |
| BstEII | GGTNACC | 1 cut(s) | 41 |
| BstF5I | GGATG | 1 cut(s) | 216 |
| BstKTI | GATC | 1 cut(s) | 328 |
| BstMBI | GATC | 1 cut(s) | 325 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 16 |
| BstNSI | RCATGY | 1 cut(s) | 367 |
| BstPI | GGTNACC | 1 cut(s) | 41 |
| Bsu36I | CCTNAGG | 1 cut(s) | 47 |
| BtsCI | GGATG | 1 cut(s) | 216 |
| Cac8I | GCNNGC | 1 cut(s) | 275 |
| Csp6I | GTAC | 1 cut(s) | 29 |
| CviAII | CATG | 4 cut(s) | 38, 242, 358, 364 |
| CviJI | RGCY | 1 cut(s) | 19 |
| CviKI_1 | RGCY | 1 cut(s) | 19 |
| CviQI | GTAC | 1 cut(s) | 29 |
| DdeI | CTNAG | 1 cut(s) | 47 |
| DpnI | GATC | 1 cut(s) | 327 |
| DpnII | GATC | 1 cut(s) | 325 |
| DraIII | CACNNNGTG | 1 cut(s) | 41 |
| Eco81I | CCTNAGG | 1 cut(s) | 47 |
| Eco91I | GGTNACC | 1 cut(s) | 41 |
| EcoO65I | GGTNACC | 1 cut(s) | 41 |
| FaeI | CATG | 4 cut(s) | 41, 245, 361, 367 |
| FaiI | YATR | 7 cut(s) | 39, 128, 243, 270, 359, 365, 370 |
| FatI | CATG | 4 cut(s) | 37, 241, 357, 363 |
| FokI | GGATG | 1 cut(s) | 223 |
| FspBI | CTAG | 1 cut(s) | 99 |
| GsuI | CTGGAG | 1 cut(s) | 162 |
| Hin1II | CATG | 4 cut(s) | 41, 245, 361, 367 |
| HphI | GGTGA | 1 cut(s) | 53 |
| Hpy166II | GTNNAC | 1 cut(s) | 258 |
| Hpy188III | TCNNGA | 1 cut(s) | 375 |
| Hpy8I | GTNNAC | 1 cut(s) | 258 |
| HpyCH4V | TGCA | 1 cut(s) | 158 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 16 |
| HpyF3I | CTNAG | 1 cut(s) | 47 |
| Hsp92II | CATG | 4 cut(s) | 41, 245, 361, 367 |
| Kzo9I | GATC | 1 cut(s) | 325 |
| LpnPI | CCDG | 6 cut(s) | 24, 59, 71, 105, 126, 259 |
| MaeI | CTAG | 1 cut(s) | 99 |
| MaeIII | GTNAC | 2 cut(s) | 41, 101 |
| MalI | GATC | 1 cut(s) | 327 |
| MboI | GATC | 1 cut(s) | 325 |
| MboII | GAAGA | 1 cut(s) | 335 |
| MluCI | AATT | 4 cut(s) | 22, 165, 191, 297 |
| MnlI | CCTC | 4 cut(s) | 42, 47, 238, 363 |
| MslI | CAYNNNNRTG | 1 cut(s) | 362 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 16 |
| NdeII | GATC | 1 cut(s) | 325 |
| NlaIII | CATG | 4 cut(s) | 41, 245, 361, 367 |
| NlaIV | GGNNCC | 3 cut(s) | 59, 90, 235 |
| NmuCI | GTSAC | 2 cut(s) | 41, 101 |
| NspI | RCATGY | 1 cut(s) | 367 |
| PspEI | GGTNACC | 1 cut(s) | 41 |
| PspN4I | GGNNCC | 3 cut(s) | 59, 90, 235 |
| RsaI | GTAC | 1 cut(s) | 30 |
| RsaNI | GTAC | 1 cut(s) | 29 |
| RseI | CAYNNNNRTG | 1 cut(s) | 362 |
| Sau3AI | GATC | 1 cut(s) | 325 |
| SetI | ASST | 3 cut(s) | 48, 63, 249 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 362 |
| Sse9I | AATT | 4 cut(s) | 22, 165, 191, 297 |
| SsiI | CCGC | 1 cut(s) | 336 |
| SspMI | CTAG | 1 cut(s) | 99 |
| TasI | AATT | 4 cut(s) | 22, 165, 191, 297 |
| TseFI | GTSAC | 2 cut(s) | 41, 101 |
| Tsp45I | GTSAC | 2 cut(s) | 41, 101 |
| TspDTI | ATGAA | 3 cut(s) | 204, 208, 254 |
| TspGWI | ACGGA | 1 cut(s) | 46 |
| XapI | RAATTY | 1 cut(s) | 165 |
| XceI | RCATGY | 1 cut(s) | 367 |
| XspI | CTAG | 1 cut(s) | 99 |