Rroxscaffold_1G00006820

PPR repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013877
Physical Location & Seq
Forward (+)
8821610 .. 8825268
3659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006820.1

Sequence Viewer

Length: 2157 bp
ATGGGGTTGAATCAGAGCTTCAGCTTCTGTTTTGCTACTCTCTTCTTCATCATTTTGTTGGGTCTTCCTGCTTCTACTTTATCTTCTCCCACTTTCATTTCAGATGGTATCTTTGAATCTCAGGTTTCTATTGGCCGGAACCTACTGCAGGCCAAGAAAGGTTGTCCAGTAAACTTTGAGTTTTTGAATTACACCATCATCACAAGCCAATGCAAAGGACCACGATACCCTGCTGACAAGTGTTGTGCTTCATTCAAGGAATTGGCTTGCCCTTATACAGATGTATTGAACGACTTGACAAATGAATGTGCTTCTATTATGTTCAGCTACATCAACCTCTATGGAAACTACCCTCCTGGCCTTTTTGCCAACGAGTGCCGCGAGGGGAAATTGGGTCTTGCATGCCCTGCATTACCGCCTTCAACTTTGGCTGATGATGTAAACGGGGTTCATACCACCTCCTCTCCATCTCCATTGCTAATGTTCACAGCTGGTTTCCTATTGTTGCTGTTCCGACTTCACATGGCTGCTGTTGCTCCTCCATCTCTTCCCAACCAGAACAAATTACCATCCTTCTCATCGAGAATTCTGGCTGGAATGCCGGCCCCCGTCGTTTTGCTTCAAATGTGCAGCAACTTTCAAGAAGTAAGACAAGTTCATGCTCAATTGGTTGTATCAGGACTAATTGAGCGCCCTATAAATGGTGGGAGGCTTCTTCAGGCCTATGTCACAGTGTCAAACTTTAACTATGCATTATCAACTTTTGATAGCATATCTAATCCTGATGTGTTTGCCTACAATACCATGATGAGAGGTTTAATACTGGGTAAGTCCCCTTATCACGCACTGAAGCTCTATAGTAGGCTTTTACTAGATGGTTTAAAACCAGACAATTACACCTACACCTTTGCTCTCAAAGCATGTTCCCAAGTGAATGCGCTCTTCGAAGGTAGAGAAGTGCATGGCCGGATAATTAAGGCCGGAATAGCACCAGATACTTACATTCATAGTTCACTGATAAACATGTACTCGAGTTCTTCAGATGGTTTGGTCTGTGCAGAGCGAGTTTTAGCTGGCTTTTCCGTGGATAACACACTTGCTAAGAACTCCTTGATTTCGGGTTACCTCAGTCAGGGTCAGGTAGAAAGTGCTAGAAAAATGTTCGACAACCTGGTAGCAAAGGATGATGCATCTTGGAGTGCAATGGTAGCAGGGTACACAAAGAATGGTATGTATGCAGAGGCATTAGTCATCTTTCGAAAGATGTTGAGTTCTCAAGTTTCTCCAAATGAATCAGCACTTGTGAGCTCATTGTGTGCTTGTGCTAATTTGGGAGCACTCGACCAAGGCAAATGGATACATGCATACATTGATAGAATTGGGGCTAGGATTAGTGTCACTGTGGGTACTGCTTTTATAGACATGTATGCAAAGTGTGGCAGCATAGAAAATGCCTATGAAGTTTTCAGGAAGATGCCACAGAAAGACGTAGTTTCATGGGGAGCTATCATTTCTGGTTTCGCCATTCATGGGGGAGCTGCAAAATGTTTTGAATTGTTTGATGATATGGTTGCTGGTGGAATTCACCCAAATGAAGTAATTTTTGTAGGTATTTTATCGGCTTGTTCTCATGCTGGGTATGTTGAAACAGGATACAAGTACTTTGACCAAATGGTTCATCATTATGGGATAAAACCATCCATTGAACATTATGGATGCATGGTGGATCTTCTTGGTCGTGCAGGGCGGCTGGCAGAGGCAGAAGGGCTCATCATGTCAATGCCGGAACAGCCTAACTCGGTTATATGGGGTGCATTTCTCGGTGCTTGTAGAATGCACAGTGACGTGAGGAGAGGGAACCTTGCTTTCAAGCACTTGACTGAACTTGAGCCAACGTCTGGTGACAGATACAAACTTGCAGGGATTATGTTTGCTAATGCTGGGGAAAAGGAAAATGCTACTAAAATTAGGAAGATCATCACAGATAATGACTTGGAGACAACTCGTGGAGTAAGCTCAATTGAGATAGATGGTGTAGTCCACCAGTTTGTAGCAGGTACCATCAACCATAGCAGGCACAAAGAAATTTACAGAATGTGGGAGAGGGTTAATAGGATATTAGAAATCCATGAGCTTGAAATTTGCATTCCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

718

Amino Acids

78.69

Weight (kDa)

6.68

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LLG1 PF26578 57 - 133 4.8e-38 LLG1 domain
PPR_2 PF13041 261 - 309 9.2e-09 PPR repeat family
PPR PF01535 398 - 425 8.2e-06 PPR repeat
PPR_2 PF13041 495 - 543 1.4e-06 PPR repeat family
E_motif PF20431 613 - 675 5.4e-06 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013877)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28280 AT4G28280 AT4G28280
malus_domestica MD03G1042100.v1.1 MD11G1044400.v1.1 MD11G1045000.v1.1
prunus_persica Prupe.6G034000_v2.0.a1
pyrus_communis pycom03g03260
rosa_chinensis RchiOBHm_Chr5g0074761
rosa_laevigata RLG00000036502
rosa_multiflora Rmu_sc0000909.1_g000018
rosa_roxburghii Rroxscaffold_1G00006820
rosa_rugosa Rorug05G0433700
rosa_samantha Rh5AG491400 Rh5BG512800 Rh5CG536500
rosa_wichuraiana Rw5G045510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2045
Acc65I GGTACC 1 cut(s) 2057
AccB1I GGYRCC 1 cut(s) 2057
AccB7I CCANNNNNTGG 1 cut(s) 1898
AccII CGCG 1 cut(s) 381
AciI CCGC 3 cut(s) 379, 416, 1747
AclWI GGATC 1 cut(s) 1734
AcoI YGGCCR 2 cut(s) 133, 964
AcsI RAATTY 4 cut(s) 585, 1581, 2085, 2139
AcuI CTGAAG 4 cut(s) 4, 701, 869, 1023
AfaI GTAC 5 cut(s) 1028, 1217, 1408, 1661, 2059
AfiI CCNNNNNNNGG 5 cut(s) 148, 701, 1132, 1530, 1898
AflIII ACRYGT 2 cut(s) 1023, 1422
AjiI CACGTC 1 cut(s) 1846
AjnI CCWGG 2 cut(s) 355, 1170
Alw21I GWGCWC 2 cut(s) 1310, 1339
Alw26I GTCTC 1 cut(s) 1991
AlwI GGATC 1 cut(s) 1734
AlwNI CAGNNNCTG 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 1030
AoxI GGCC 7 cut(s) 133, 150, 358, 603, 720, 964, 978
ApeKI GCWGC 4 cut(s) 527, 630, 1440, 1538
ApoI RAATTY 4 cut(s) 585, 1581, 2085, 2139
Asp718I GGTACC 1 cut(s) 2057
AspLEI GCGC 2 cut(s) 693, 940
AspS9I GGNCC 2 cut(s) 218, 604
AsuHPI GGTGA 2 cut(s) 1577, 1913
AsuII TTCGAA 2 cut(s) 945, 1258
AvaI CYCGRG 1 cut(s) 1030
AvaII GGWCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 2057
BanII GRGCYC 2 cut(s) 1310, 1770
BauI CACGAG 1 cut(s) 2004
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 2 cut(s) 1310, 1339
BbvI GCAGC 4 cut(s) 514, 642, 1452, 1525
BciT130I CCWGG 2 cut(s) 357, 1172
BciVI GTATCC 2 cut(s) 1350, 1646
BcoDI GTCTC 1 cut(s) 1991
BfaI CTAG 4 cut(s) 872, 1152, 1386, 2155
BfmI CTRYAG 2 cut(s) 146, 856
BfoI RGCGCY 1 cut(s) 694
BfuAI ACCTGC 1 cut(s) 2045
BfuI GTATCC 2 cut(s) 1350, 1646
BisI GCNGC 6 cut(s) 379, 528, 631, 1441, 1539, 1748
BlsI GCNGC 6 cut(s) 380, 529, 632, 1442, 1540, 1749
BmcAI AGTACT 1 cut(s) 1661
Bme1390I CCNGG 2 cut(s) 357, 1172
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 1030
BmgBI CACGTC 1 cut(s) 1846
BmgT120I GGNCC 2 cut(s) 218, 604
BmiI GGNNCC 4 cut(s) 140, 606, 1859, 2059
BmrFI CCNGG 2 cut(s) 357, 1172
BmrI ACTGGG 1 cut(s) 833
BmsI GCATC 4 cut(s) 1177, 1199, 1464, 1706
BmuI ACTGGG 1 cut(s) 833
BpiI GAAGAC 1 cut(s) 56
Bpu14I TTCGAA 2 cut(s) 945, 1258
BpuEI CTTGAG 2 cut(s) 1260, 1907
BsaJI CCNNGG 2 cut(s) 1083, 1345
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 5 cut(s) 148, 701, 1132, 1530, 1898
Bse118I RCCGGY 1 cut(s) 601
Bse1I ACTGG 3 cut(s) 167, 828, 2044
Bse3DI GCAATG 2 cut(s) 473, 1209
BseBI CCWGG 2 cut(s) 357, 1172
BseDI CCNNGG 2 cut(s) 1083, 1345
BseGI GGATG 4 cut(s) 569, 1189, 1697, 1721
BseLI CCNNNNNNNGG 5 cut(s) 148, 701, 1132, 1530, 1898
BseMI GCAATG 2 cut(s) 473, 1209
BseMII CTCAG 2 cut(s) 134, 1141
BseNI ACTGG 3 cut(s) 167, 828, 2044
BseRI GAGGAG 3 cut(s) 451, 528, 1864
BseXI GCAGC 4 cut(s) 514, 642, 1452, 1525
BseYI CCCAGC 2 cut(s) 1634, 1940
BsgI GTGCAG 3 cut(s) 649, 1077, 1761
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 7 cut(s) 135, 152, 360, 605, 722, 966, 980
BshNI GGYRCC 1 cut(s) 2057
BsiHKAI GWGCWC 2 cut(s) 1310, 1339
BsiHKCI CYCGRG 1 cut(s) 1030
BsiSI CCGG 5 cut(s) 136, 602, 967, 981, 1784
BslFI GGGAC 1 cut(s) 817
BslI CCNNNNNNNGG 5 cut(s) 148, 701, 1132, 1530, 1898
BsmAI GTCTC 1 cut(s) 1991
BsmFI GGGAC 1 cut(s) 817
BsmI GAATGC 4 cut(s) 603, 940, 1839, 2145
BsnI GGCC 7 cut(s) 135, 152, 360, 605, 722, 966, 980
BsoBI CYCGRG 1 cut(s) 1030
Bsp119I TTCGAA 2 cut(s) 945, 1258
Bsp1286I GDGCHC 3 cut(s) 1310, 1339, 1770
Bsp143I GATC 2 cut(s) 1726, 1974
BspACI CCGC 3 cut(s) 379, 416, 1747
BspANI GGCC 7 cut(s) 135, 152, 360, 605, 722, 966, 980
BspCNI CTCAG 2 cut(s) 133, 1140
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 4 cut(s) 140, 606, 1859, 2059
BspMAI CTGCAG 1 cut(s) 150
BspMI ACCTGC 1 cut(s) 2045
BspPI GGATC 1 cut(s) 1734
BspQI GCTCTTC 1 cut(s) 947
BspT104I TTCGAA 2 cut(s) 945, 1258
BspT107I GGYRCC 1 cut(s) 2057
BsrDI GCAATG 2 cut(s) 473, 1209
BsrFI RCCGGY 1 cut(s) 601
BsrI ACTGG 3 cut(s) 167, 828, 2044
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 2 cut(s) 1083, 1345
BssMI GATC 2 cut(s) 1726, 1974
BssSI CACGAG 1 cut(s) 2004
BssT1I CCWWGG 1 cut(s) 1345
Bst2BI CACGAG 1 cut(s) 2004
Bst2UI CCWGG 2 cut(s) 357, 1172
Bst4CI ACNGT 3 cut(s) 733, 1402, 1841
Bst6I CTCTTC 3 cut(s) 47, 552, 947
BstAPI GCANNNNNTGC 1 cut(s) 407
BstBI TTCGAA 2 cut(s) 945, 1258
BstC8I GCNNGC 7 cut(s) 150, 268, 403, 603, 1075, 1752, 2075
BstDEI CTNAG 3 cut(s) 120, 1101, 1127
BstDSI CCRYGG 1 cut(s) 1083
BstEII GGTNACC 1 cut(s) 1121
BstENI CCTNNNNNAGG 2 cut(s) 146, 1130
BstF5I GGATG 4 cut(s) 569, 1189, 1697, 1721
BstFNI CGCG 1 cut(s) 381
BstH2I RGCGCY 1 cut(s) 694
BstHHI GCGC 2 cut(s) 693, 940
BstKTI GATC 2 cut(s) 1729, 1977
BstMAI GTCTC 1 cut(s) 1991
BstMBI GATC 2 cut(s) 1726, 1974
BstMWI GCNNNNNNNGC 6 cut(s) 407, 533, 917, 986, 1208, 1789
BstNI CCWGG 2 cut(s) 357, 1172
BstNSI RCATGY 5 cut(s) 405, 924, 1027, 1364, 1426
BstPI GGTNACC 1 cut(s) 1121
BstSCI CCNGG 2 cut(s) 355, 1170
BstSFI CTRYAG 2 cut(s) 146, 856
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 4 cut(s) 514, 642, 1452, 1525
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 1726
BstYI RGATCY 1 cut(s) 1726
BsuI GTATCC 2 cut(s) 1350, 1646
BsuRI GGCC 7 cut(s) 135, 152, 360, 605, 722, 966, 980
BtgI CCRYGG 1 cut(s) 1083
BtrI CACGTC 1 cut(s) 1846
BtsCI GGATG 4 cut(s) 569, 1189, 1697, 1721
BtsIMutI CAGTG 5 cut(s) 738, 845, 1013, 1398, 1846
BveI ACCTGC 1 cut(s) 2045
Cac8I GCNNGC 7 cut(s) 150, 268, 403, 603, 1075, 1752, 2075
CaiI CAGNNNCTG 1 cut(s) 27
CfoI GCGC 2 cut(s) 693, 940
Cfr10I RCCGGY 1 cut(s) 601
Cfr13I GGNCC 2 cut(s) 218, 604
CsiI ACCWGGT 1 cut(s) 1170
Csp6I GTAC 5 cut(s) 1027, 1216, 1407, 1660, 2058
CviQI GTAC 5 cut(s) 1027, 1216, 1407, 1660, 2058
DdeI CTNAG 3 cut(s) 120, 1101, 1127
DpnI GATC 2 cut(s) 1728, 1976
DpnII GATC 2 cut(s) 1726, 1974
DraI TTTAAA 1 cut(s) 882
EaeI YGGCCR 2 cut(s) 133, 964
Eam1104I CTCTTC 3 cut(s) 47, 552, 947
EarI CTCTTC 3 cut(s) 47, 552, 947
Ecl136II GAGCTC 1 cut(s) 1308
Eco130I CCWWGG 1 cut(s) 1345
Eco147I AGGCCT 1 cut(s) 722
Eco24I GRGCYC 2 cut(s) 1310, 1770
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 1308
Eco57I CTGAAG 4 cut(s) 4, 701, 869, 1023
Eco88I CYCGRG 1 cut(s) 1030
Eco91I GGTNACC 1 cut(s) 1121
EcoICRI GAGCTC 1 cut(s) 1308
EcoNI CCTNNNNNAGG 2 cut(s) 146, 1130
EcoO65I GGTNACC 1 cut(s) 1121
EcoRI GAATTC 2 cut(s) 585, 1581
EcoRII CCWGG 2 cut(s) 355, 1170
EcoT14I CCWWGG 1 cut(s) 1345
EcoT22I ATGCAT 4 cut(s) 754, 1192, 1366, 1721
EcoT38I GRGCYC 2 cut(s) 1310, 1770
ErhI CCWWGG 1 cut(s) 1345
FalI AAGNNNNNCTT 2 cut(s) 1094, 1126
FaqI GGGAC 1 cut(s) 817
Fnu4HI GCNGC 6 cut(s) 379, 528, 631, 1441, 1539, 1748
FokI GGATG 4 cut(s) 556, 1196, 1684, 1728
FriOI GRGCYC 2 cut(s) 1310, 1770
Fsp4HI GCNGC 6 cut(s) 379, 528, 631, 1441, 1539, 1748
FspBI CTAG 4 cut(s) 872, 1152, 1386, 2155
GlaI GCGC 2 cut(s) 692, 939
GluI GCNGC 6 cut(s) 379, 528, 631, 1441, 1539, 1748
GsaI CCCAGC 2 cut(s) 1638, 1944
HaeII RGCGCY 1 cut(s) 694
HaeIII GGCC 7 cut(s) 135, 152, 360, 605, 722, 966, 980
HapII CCGG 5 cut(s) 136, 602, 967, 981, 1784
HhaI GCGC 2 cut(s) 693, 940
Hin6I GCGC 2 cut(s) 691, 938
HinP1I GCGC 2 cut(s) 691, 938
HinfI GANTC 3 cut(s) 10, 116, 1292
HpaII CCGG 5 cut(s) 136, 602, 967, 981, 1784
HphI GGTGA 2 cut(s) 1577, 1913
Hpy166II GTNNAC 6 cut(s) 172, 442, 486, 1013, 1218, 2041
Hpy188I TCNGA 4 cut(s) 15, 103, 515, 1042
Hpy188III TCNNGA 5 cut(s) 582, 641, 678, 782, 1468
Hpy8I GTNNAC 6 cut(s) 172, 442, 486, 1013, 1218, 2041
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 4 cut(s) 429, 583, 941, 1757
HpyCH4III ACNGT 3 cut(s) 733, 1402, 1841
HpyCH4IV ACGT 3 cut(s) 1488, 1845, 1895
HpyF10VI GCNNNNNNNGC 6 cut(s) 407, 533, 917, 986, 1208, 1789
HpyF3I CTNAG 3 cut(s) 120, 1101, 1127
HpySE526I ACGT 3 cut(s) 1488, 1845, 1895
HspAI GCGC 2 cut(s) 691, 938
KpnI GGTACC 1 cut(s) 2061
KroI GCCGGC 1 cut(s) 601
KroNI GCCGGC 1 cut(s) 603
Kzo9I GATC 2 cut(s) 1726, 1974
LguI GCTCTTC 1 cut(s) 947
LmnI GCTCC 4 cut(s) 541, 1334, 1502, 1535
Lsp1109I GCAGC 4 cut(s) 514, 642, 1452, 1525
LweI GCATC 4 cut(s) 1177, 1199, 1464, 1706
MabI ACCWGGT 1 cut(s) 1170
MaeI CTAG 4 cut(s) 872, 1152, 1386, 2155
MaeII ACGT 3 cut(s) 1488, 1845, 1895
MaeIII GTNAC 5 cut(s) 727, 1121, 1396, 1841, 1901
MalI GATC 2 cut(s) 1728, 1976
MboI GATC 2 cut(s) 1726, 1974
MfeI CAATTG 2 cut(s) 665, 2019
MflI RGATCY 1 cut(s) 1726
MhlI GDGCHC 3 cut(s) 1310, 1339, 1770
MmeI TCCRAC 1 cut(s) 538
Mph1103I ATGCAT 4 cut(s) 754, 1192, 1366, 1721
MroNI GCCGGC 1 cut(s) 601
MseI TTAA 5 cut(s) 744, 818, 881, 975, 2109
MslI CAYNNNNRTG 3 cut(s) 1590, 1683, 1778
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 5 cut(s) 136, 602, 967, 981, 1784
MspR9I CCNGG 2 cut(s) 357, 1172
MunI CAATTG 2 cut(s) 665, 2019
Mva1269I GAATGC 4 cut(s) 603, 940, 1839, 2145
MvaI CCWGG 2 cut(s) 357, 1172
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 6 cut(s) 407, 533, 917, 986, 1208, 1789
NaeI GCCGGC 1 cut(s) 603
NdeII GATC 2 cut(s) 1726, 1974
NgoMIV GCCGGC 1 cut(s) 601
NlaIV GGNNCC 4 cut(s) 140, 606, 1859, 2059
NmuCI GTSAC 4 cut(s) 727, 1396, 1841, 1901
NsiI ATGCAT 4 cut(s) 754, 1192, 1366, 1721
NspI RCATGY 5 cut(s) 405, 924, 1027, 1364, 1426
NspV TTCGAA 2 cut(s) 945, 1258
PaeI GCATGC 1 cut(s) 405
PaeR7I CTCGAG 1 cut(s) 1030
PceI AGGCCT 1 cut(s) 722
PciI ACATGT 2 cut(s) 1023, 1422
PciSI GCTCTTC 1 cut(s) 947
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PctI GAATGC 4 cut(s) 603, 940, 1839, 2145
PdiI GCCGGC 1 cut(s) 603
PfeI GAWTC 3 cut(s) 10, 116, 1292
PflMI CCANNNNNTGG 1 cut(s) 1898
PkrI GCNGC 6 cut(s) 380, 529, 632, 1442, 1540, 1749
PscI ACATGT 2 cut(s) 1023, 1422
Psp124BI GAGCTC 1 cut(s) 1310
Psp6I CCWGG 2 cut(s) 355, 1170
PspEI GGTNACC 1 cut(s) 1121
PspFI CCCAGC 2 cut(s) 1634, 1940
PspGI CCWGG 2 cut(s) 355, 1170
PspN4I GGNNCC 4 cut(s) 140, 606, 1859, 2059
PspPI GGNCC 2 cut(s) 218, 604
PspXI VCTCGAGB 1 cut(s) 1030
PsrI GAACNNNNNNTAC 4 cut(s) 432, 464, 639, 671
PstI CTGCAG 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 27
PsuI RGATCY 1 cut(s) 1726
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 5 cut(s) 1028, 1217, 1408, 1661, 2059
RsaNI GTAC 5 cut(s) 1027, 1216, 1407, 1660, 2058
RseI CAYNNNNRTG 3 cut(s) 1590, 1683, 1778
SacI GAGCTC 1 cut(s) 1310
SapI GCTCTTC 1 cut(s) 947
SaqAI TTAA 5 cut(s) 744, 818, 881, 975, 2109
SatI GCNGC 6 cut(s) 379, 528, 631, 1441, 1539, 1748
Sau3AI GATC 2 cut(s) 1726, 1974
Sau96I GGNCC 2 cut(s) 218, 604
ScaI AGTACT 1 cut(s) 1661
ScrFI CCNGG 2 cut(s) 357, 1172
SduI GDGCHC 3 cut(s) 1310, 1339, 1770
SexAI ACCWGGT 1 cut(s) 1170
SfaNI GCATC 4 cut(s) 1177, 1199, 1464, 1706
SfcI CTRYAG 2 cut(s) 146, 856
Sfr274I CTCGAG 1 cut(s) 1030
SfuI TTCGAA 2 cut(s) 945, 1258
SinI GGWCC 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 1030
SmiMI CAYNNNNRTG 3 cut(s) 1590, 1683, 1778
SmlI CTYRAG 3 cut(s) 1030, 1275, 1886
SmoI CTYRAG 3 cut(s) 1030, 1275, 1886
SphI GCATGC 1 cut(s) 405
SseBI AGGCCT 1 cut(s) 722
SsiI CCGC 3 cut(s) 379, 416, 1747
SspMI CTAG 4 cut(s) 872, 1152, 1386, 2155
SstI GAGCTC 1 cut(s) 1310
StuI AGGCCT 1 cut(s) 722
StyD4I CCNGG 2 cut(s) 355, 1170
StyI CCWWGG 1 cut(s) 1345
TaaI ACNGT 3 cut(s) 733, 1402, 1841
TaiI ACGT 3 cut(s) 1491, 1848, 1898
TaqI TCGA 6 cut(s) 581, 945, 1031, 1164, 1258, 1341
TatI WGTACW 2 cut(s) 1026, 1659
TauI GCSGC 2 cut(s) 381, 1750
TfiI GAWTC 3 cut(s) 10, 116, 1292
Tru1I TTAA 5 cut(s) 744, 818, 881, 975, 2109
Tru9I TTAA 5 cut(s) 744, 818, 881, 975, 2109
TscAI CASTG 5 cut(s) 738, 852, 1020, 1405, 1846
TseFI GTSAC 4 cut(s) 727, 1396, 1841, 1901
TseI GCWGC 4 cut(s) 527, 630, 1440, 1538
Tsp45I GTSAC 4 cut(s) 727, 1396, 1841, 1901
TspGWI ACGGA 1 cut(s) 1072
TspRI CASTG 5 cut(s) 738, 852, 1020, 1405, 1846
Van91I CCANNNNNTGG 1 cut(s) 1898
VpaK11BI GGWCC 1 cut(s) 218
XagI CCTNNNNNAGG 2 cut(s) 146, 1130
XapI RAATTY 4 cut(s) 585, 1581, 2085, 2139
XceI RCATGY 5 cut(s) 405, 924, 1027, 1364, 1426
XhoI CTCGAG 1 cut(s) 1030
XspI CTAG 4 cut(s) 872, 1152, 1386, 2155
ZrmI AGTACT 1 cut(s) 1661
Zsp2I ATGCAT 4 cut(s) 754, 1192, 1366, 1721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.