AT4G28485

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013979
Physical Location & Seq
Reverse (-)
14075235 .. 14076011
777 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28485.2

Sequence Viewer

Length: 498 bp
ATGGAGGAGACGAAGCAGTCATTGATAGCATCGTTGCCGTCGGCACCAAGAAAACCAAAGTCGAAAGTAGAGAGAGTTGTCAGTGTCCCACCATCACCAGTCGCTGGCTCACCTGCTTCCTCGTCTCCTTATGCGCCATCTCCTGCTTCCTCTTCTCCTTTACCGACTCCATTAGAGACCCAAACGGCAAGGTACGGGTTGGCAACGTGGAGTGGGCTATTAGTGATGGATGGATCGATTACTTTAACGGAGGAGGAGAAGGAAAAGTATAAGCTCAAGATTCTTGATTTTATTCACGCAATCATGTCAATGCTCGTCTTCTTCGCAGTCTCCATGTTTGATCAGAACGTAACCCGTTGTTTATTCCCCGTTCCTTCCGAGGAAACCAAGGAGATTCTTACCAGTTTACCTTTTGTCATCGGCGTCATTTGTGGTGCCTTCTTCCTAGCGTTCCCTACACGCCGTCATGGCATCGGATCTCCCCTTACCAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

165

Amino Acids

17.88

Weight (kDa)

7.77

Isoelectric Point (pI)

74.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 33 - 194 1.6e-66 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0013979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28485 AT4G28485
fragaria_vesca FvH4_6g26701
malus_domestica MD03G1070300.v1.1 MD11G1074100.v1.1
prunus_persica Prupe.4G053000_v2.0.a1
pyrus_communis pycom11g06150
rosa_chinensis RchiOBHm_Chr0c19g0500031
rosa_laevigata RLG00000018985
rosa_multiflora Rmu_sc0008568.1_g000003
rosa_roxburghii Rroxscaffold_2G00115750
rosa_rugosa Rorug02G0277600
rosa_samantha Rh2AG328200 Rh2BG338300 Rh2CG315300 Rh2DG355200
rosa_wichuraiana Rw2G026620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
AasI GACNNNNNNGTC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 121
AccB1I GGYRCC 2 cut(s) 43, 434
AccB7I CCANNNNNTGG 1 cut(s) 104
AclWI GGATC 2 cut(s) 241, 484
AcyI GRCGYC 1 cut(s) 423
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 104
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 4 cut(s) 2, 129, 170, 334
AlwI GGATC 2 cut(s) 241, 484
AlwNI CAGNNNCTG 1 cut(s) 104
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 87, 102
BanI GGYRCC 2 cut(s) 43, 434
BbsI GAAGAC 1 cut(s) 310
BccI CCATC 4 cut(s) 100, 145, 220, 224
BceAI ACGGC 3 cut(s) 22, 201, 447
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 4 cut(s) 2, 129, 170, 334
BfaI CTAG 1 cut(s) 446
BfuAI ACCTGC 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 468
BmiI GGNNCC 2 cut(s) 45, 436
BmsI GCATC 2 cut(s) 38, 480
BpiI GAAGAC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 260
Bsa29I ATCGAT 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 378, 387
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 98, 402
BseCI ATCGAT 1 cut(s) 236
BseDI CCNNGG 2 cut(s) 378, 387
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 2 cut(s) 98, 402
BseRI GAGGAG 3 cut(s) 20, 266, 269
BshNI GGYRCC 2 cut(s) 43, 434
BshVI ATCGAT 1 cut(s) 236
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 4 cut(s) 2, 129, 170, 334
BsmBI CGTCTC 2 cut(s) 2, 129
BsmFI GGGAC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 233, 340, 476
BspDI ATCGAT 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 45, 436
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 2 cut(s) 241, 484
BspT107I GGYRCC 2 cut(s) 43, 434
BspTNI GGTCTC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 98, 402
BssECI CCNNGG 2 cut(s) 378, 387
BssMI GATC 3 cut(s) 233, 340, 476
BssNI GRCGYC 1 cut(s) 423
BssT1I CCWWGG 1 cut(s) 387
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 106
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 3 cut(s) 236, 343, 479
BstMAI GTCTC 4 cut(s) 2, 129, 170, 334
BstMBI GATC 3 cut(s) 233, 340, 476
BstMWI GCNNNNNNNGC 1 cut(s) 468
BstV2I GAAGAC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
Bsu15I ATCGAT 1 cut(s) 236
BsuTUI ATCGAT 1 cut(s) 236
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 104
CfoI GCGC 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 236
CseI GACGC 1 cut(s) 412
Csp6I GTAC 1 cut(s) 193
CviAII CATG 3 cut(s) 304, 334, 467
CviJI RGCY 3 cut(s) 108, 217, 274
CviKI_1 RGCY 3 cut(s) 108, 217, 274
CviQI GTAC 1 cut(s) 193
DpnI GATC 3 cut(s) 235, 342, 478
DpnII GATC 3 cut(s) 233, 340, 476
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
Esp3I CGTCTC 2 cut(s) 2, 129
FaeI CATG 3 cut(s) 307, 337, 470
FaiI YATR 5 cut(s) 132, 270, 305, 335, 468
FaqI GGGAC 1 cut(s) 71
FatI CATG 3 cut(s) 303, 333, 466
FbaI TGATCA 1 cut(s) 340
FokI GGATG 1 cut(s) 242
FspBI CTAG 1 cut(s) 446
GlaI GCGC 1 cut(s) 135
HgaI GACGC 1 cut(s) 412
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 423
Hin1II CATG 3 cut(s) 307, 337, 470
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 3 cut(s) 166, 280, 394
HphI GGTGA 2 cut(s) 87, 102
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 3 cut(s) 345, 379, 476
Hpy188III TCNNGA 2 cut(s) 277, 284
Hpy8I GTNNAC 1 cut(s) 407
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 3 cut(s) 253, 384, 448
HpyCH4IV ACGT 2 cut(s) 206, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 468
HpySE526I ACGT 2 cut(s) 206, 348
Hsp92I GRCGYC 1 cut(s) 423
Hsp92II CATG 3 cut(s) 307, 337, 470
HspAI GCGC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 3 cut(s) 233, 340, 476
LpnPI CCDG 5 cut(s) 90, 111, 126, 156, 415
LweI GCATC 2 cut(s) 38, 480
MaeI CTAG 1 cut(s) 446
MaeII ACGT 2 cut(s) 206, 348
MaeIII GTNAC 1 cut(s) 349
MalI GATC 3 cut(s) 235, 342, 478
MboI GATC 3 cut(s) 233, 340, 476
MboII GAAGA 4 cut(s) 144, 310, 313, 433
MflI RGATCY 1 cut(s) 476
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 5 cut(s) 130, 160, 244, 247, 373
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 468
NdeII GATC 3 cut(s) 233, 340, 476
NlaIII CATG 3 cut(s) 307, 337, 470
NlaIV GGNNCC 2 cut(s) 45, 436
PaqCI CACCTGC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 280, 394
PflMI CCANNNNNTGG 1 cut(s) 104
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 45, 436
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 245
Sau3AI GATC 3 cut(s) 233, 340, 476
SchI GAGTC 1 cut(s) 160
SetI ASST 6 cut(s) 115, 194, 209, 276, 351, 412
SfaNI GCATC 2 cut(s) 38, 480
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SspMI CTAG 1 cut(s) 446
StyI CCWWGG 1 cut(s) 387
TaiI ACGT 2 cut(s) 209, 351
TaqI TCGA 2 cut(s) 62, 236
TfiI GAWTC 2 cut(s) 280, 394
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 1 cut(s) 88
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 104
XspI CTAG 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.