Rh2CG315300

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013979
Physical Location & Seq
Forward (+)
39963937 .. 39964461
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG315300.1

Sequence Viewer

Length: 525 bp
ATGAGAAAGACATTCAAAGGCACGGCCCATTTGGCCAATCTTCTTCCAACTGGAACAGTTCTCACATTCCAAATGTTCTCTCCAGCTTTTACACACCAAGGCAAGTGCCCCACCGTTGCCAACCATACAATGACATTATCCCTTCTAATCTTTTGCTCTGTCTCCTCTTTTCTTTTGTGCTTCACCGATAGCTTTCGCGACGAGCGGGGAAAAGTTCGATATGGGTTGGCCACTTTCAAAGGATTGTTTGTGCTTGACGGCTCTCACACGATTGGGGCAGAGGAGGCAGCAAAATACAAGCTGACATTCATTGATTTCTTCCATGCTTTTATGTCTGTGCTGGTGTTTGGGGCGGTGGCATCGTTTGATCAGAATATTGTCAACTGCTTTTATCCTAAGCCGTCAGAGGAGGGGAAACAACTTTTGTTTGCGGTGCCGGTTGGAGTTGGTGTTGTTTGCAGTATCTCATTTGTTTTGTTTCCTACTAGGCGCCATGGAATTGGCTTCCCTCTTTCTCGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

174

Amino Acids

19.16

Weight (kDa)

9.25

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 7 - 169 8.3e-68 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28485 AT4G28485
fragaria_vesca FvH4_6g26701
malus_domestica MD03G1070300.v1.1 MD11G1074100.v1.1
prunus_persica Prupe.4G053000_v2.0.a1
pyrus_communis pycom11g06150
rosa_chinensis RchiOBHm_Chr0c19g0500031
rosa_laevigata RLG00000018985
rosa_multiflora Rmu_sc0008568.1_g000003
rosa_roxburghii Rroxscaffold_2G00115750
rosa_rugosa Rorug02G0277600
rosa_samantha Rh2AG328200 Rh2BG338300 Rh2CG315300 Rh2DG355200
rosa_wichuraiana Rw2G026620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 433, 489
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 198
AciI CCGC 3 cut(s) 205, 353, 431
AcoI YGGCCR 2 cut(s) 33, 228
AcyI GRCGYC 1 cut(s) 490
AgsI TTSAA 2 cut(s) 16, 238
AluBI AGCT 3 cut(s) 86, 192, 301
AluI AGCT 3 cut(s) 86, 192, 301
Alw26I GTCTC 1 cut(s) 166
AoxI GGCC 3 cut(s) 24, 33, 228
ApeKI GCWGC 1 cut(s) 287
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 110
BalI TGGCCA 2 cut(s) 35, 230
BanI GGYRCC 2 cut(s) 433, 489
BbvI GCAGC 1 cut(s) 299
BceAI ACGGC 3 cut(s) 39, 274, 385
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 486
BfoI RGCGCY 1 cut(s) 493
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 435, 491
BmsI GCATC 1 cut(s) 368
BpmI CTGGAG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 490
BsaJI CCNNGG 2 cut(s) 97, 493
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bse118I RCCGGY 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 55
BseDI CCNNGG 2 cut(s) 97, 493
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 3 cut(s) 154, 296, 422
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 3 cut(s) 26, 35, 230
BshNI GGYRCC 2 cut(s) 433, 489
BsiSI CCGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 166
BsnI GGCC 3 cut(s) 26, 35, 230
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 367
Bsp19I CCATGG 1 cut(s) 493
Bsp68I TCGCGA 1 cut(s) 198
BspACI CCGC 3 cut(s) 205, 353, 431
BspANI GGCC 3 cut(s) 26, 35, 230
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 435, 491
BspT107I GGYRCC 2 cut(s) 433, 489
BsrBI CCGCTC 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 436
BsrI ACTGG 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 97, 493
BssMI GATC 1 cut(s) 367
BssNI GRCGYC 1 cut(s) 490
BssT1I CCWWGG 2 cut(s) 97, 493
Bst4CI ACNGT 2 cut(s) 58, 115
BstACI GRCGYC 1 cut(s) 490
BstDEI CTNAG 1 cut(s) 396
BstDSI CCRYGG 1 cut(s) 493
BstFNI CGCG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 493
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 2 cut(s) 32, 284
BstSLI GKGCMC 1 cut(s) 110
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 299
BstXI CCANNNNNNTGG 1 cut(s) 500
BsuRI GGCC 3 cut(s) 26, 35, 230
BtgI CCRYGG 1 cut(s) 493
BtuMI TCGCGA 1 cut(s) 198
CfoI GCGC 1 cut(s) 492
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 25
CviAII CATG 2 cut(s) 323, 494
CviJI RGCY 9 cut(s) 26, 35, 86, 192, 230, 261, 301, 400, 504
CviKI_1 RGCY 9 cut(s) 26, 35, 86, 192, 230, 261, 301, 400, 504
DdeI CTNAG 1 cut(s) 396
DinI GGCGCC 1 cut(s) 491
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
EaeI YGGCCR 2 cut(s) 33, 228
Eco130I CCWWGG 2 cut(s) 97, 493
EcoT14I CCWWGG 2 cut(s) 97, 493
EgeI GGCGCC 1 cut(s) 491
EheI GGCGCC 1 cut(s) 491
ErhI CCWWGG 2 cut(s) 97, 493
FaeI CATG 2 cut(s) 326, 497
FaiI YATR 5 cut(s) 126, 222, 324, 332, 495
FatI CATG 2 cut(s) 322, 493
FauI CCCGC 1 cut(s) 198
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 486
GlaI GCGC 1 cut(s) 491
GluI GCNGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 493
HaeIII GGCC 3 cut(s) 26, 35, 230
HapII CCGG 1 cut(s) 437
HhaI GCGC 1 cut(s) 492
Hin1I GRCGYC 1 cut(s) 490
Hin1II CATG 2 cut(s) 326, 497
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HpaII CCGG 1 cut(s) 437
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 2 cut(s) 372, 406
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 382
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 58, 115
HpyCH4V TGCA 1 cut(s) 459
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 284
HpyF3I CTNAG 1 cut(s) 396
Hsp92I GRCGYC 1 cut(s) 490
Hsp92II CATG 2 cut(s) 326, 497
HspAI GCGC 1 cut(s) 490
KasI GGCGCC 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 1 cut(s) 367
LpnPI CCDG 4 cut(s) 36, 96, 326, 450
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 368
MaeI CTAG 1 cut(s) 486
MalI GATC 1 cut(s) 369
MbiI CCGCTC 1 cut(s) 205
MboI GATC 1 cut(s) 367
MboII GAAGA 3 cut(s) 32, 35, 310
MhlI GDGCHC 1 cut(s) 110
MlsI TGGCCA 2 cut(s) 35, 230
MluCI AATT 1 cut(s) 498
MluNI TGGCCA 2 cut(s) 35, 230
Mly113I GGCGCC 1 cut(s) 490
MmeI TCCRAC 2 cut(s) 71, 421
MnlI CCTC 6 cut(s) 175, 274, 277, 400, 403, 519
Mox20I TGGCCA 2 cut(s) 35, 230
MscI TGGCCA 2 cut(s) 35, 230
Msp20I TGGCCA 2 cut(s) 35, 230
MspI CCGG 1 cut(s) 437
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 32, 284
NarI GGCGCC 1 cut(s) 490
NcoI CCATGG 1 cut(s) 493
NdeII GATC 1 cut(s) 367
NlaIII CATG 2 cut(s) 326, 497
NlaIV GGNNCC 2 cut(s) 435, 491
NruI TCGCGA 1 cut(s) 198
PkrI GCNGC 1 cut(s) 289
PluTI GGCGCC 1 cut(s) 493
PspN4I GGNNCC 2 cut(s) 435, 491
PspPI GGNCC 1 cut(s) 25
RruI TCGCGA 1 cut(s) 198
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 110
SetI ASST 3 cut(s) 88, 194, 303
SfaNI GCATC 1 cut(s) 368
SfiI GGCCNNNNNGGCC 1 cut(s) 32
SfoI GGCGCC 1 cut(s) 491
Sse9I AATT 1 cut(s) 498
SsiI CCGC 3 cut(s) 205, 353, 431
SspDI GGCGCC 1 cut(s) 489
SspI AATATT 1 cut(s) 376
SspMI CTAG 1 cut(s) 486
StyI CCWWGG 2 cut(s) 97, 493
TaaI ACNGT 2 cut(s) 58, 115
TaqI TCGA 1 cut(s) 217
TasI AATT 1 cut(s) 498
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 298
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.