FvH4_6g26701

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013979
Physical Location & Seq
Forward (+)
20413614 .. 20415472
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26701.t1

Sequence Viewer

Length: 828 bp
ATGTCTACACTTCATGAAACACAACATCCACTTTTGGAGAACTATGGTAATAATAATAGTGCATCACCTGCAACAACAACATTATCATTATCATCTTCATCACCGTCATCGTCAGTACTACCTTCAAAACCACCAAAGACACCAGCACAAAAAGCAATGAGAAAGACATTTAAAGGTACAGCCCATTTGGCTAATCTTCTCCCAACTGGAACAGTTCTCACATTTCAAATGTTCTCCCCAGCTTTTACATATCAAGGAAAGTGCCCCACCGTTGCCAACCATACAATGACAATATCTCTTCTAATTTTTTGCTCTGTTTCCTCTTTCCTTTTATGCTTCACGGATAGCATTCGTGACGAGCGTGGCAAAGTTCGATACGGCTTGGCCACGTTTAAAGGGTTGTTTGTGCTTGATGGGTCGTACAAAATTAGGGTAGAGGACGTAGCAAAATACAAGCTTACATTCATTGATTTCTTTCATGCTTTTATGTCTGTGTTGGTATTTGGGGCAGTGGCATTGTTTGATCAAAATATTGTCAACTGTTTTTATCCCCAGCCATCAGAAGAAGGGAAACAACTTTTGTTTGCGGTGCCAGTTGGAGTTGGTGTTGTTTGCAGTATCTTATTTGTTTTGTTCCCTACCAGACGCCATGGTATTGGCTTCCCTCTTTCTCAAGACGACAACAACACCTGGAAGCCGAAGACTCTAAACACCGACAACGCTGGACGTCGATCACTCGATCTGGACGCTGACGACGCTGGACGCCAACGACTCAATCTTGATGCCGAGGACTCCTGGATGCCGACGGCTGCGAGATCTCGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

276

Amino Acids

30.35

Weight (kDa)

9.1

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 59 - 221 1.9e-67 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28485 AT4G28485
fragaria_vesca FvH4_6g26701
malus_domestica MD03G1070300.v1.1 MD11G1074100.v1.1
prunus_persica Prupe.4G053000_v2.0.a1
pyrus_communis pycom11g06150
rosa_chinensis RchiOBHm_Chr0c19g0500031
rosa_laevigata RLG00000018985
rosa_multiflora Rmu_sc0008568.1_g000003
rosa_roxburghii Rroxscaffold_2G00115750
rosa_rugosa Rorug02G0277600
rosa_samantha Rh2AG328200 Rh2BG338300 Rh2CG315300 Rh2DG355200
rosa_wichuraiana Rw2G026620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
AatII GACGTC 1 cut(s) 730
Acc36I ACCTGC 1 cut(s) 76
AccB1I GGYRCC 1 cut(s) 589
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 587
AcoI YGGCCR 1 cut(s) 384
AcyI GRCGYC 3 cut(s) 646, 727, 763
AfaI GTAC 3 cut(s) 117, 178, 422
AgsI TTSAA 2 cut(s) 126, 227
AjnI CCWGG 2 cut(s) 689, 794
AluBI AGCT 2 cut(s) 242, 457
AluI AGCT 2 cut(s) 242, 457
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 809
AsuHPI GGTGA 2 cut(s) 57, 93
BaeGI GKGCMC 1 cut(s) 266
BalI TGGCCA 1 cut(s) 386
BanI GGYRCC 1 cut(s) 589
BbsI GAAGAC 1 cut(s) 707
BbvI GCAGC 1 cut(s) 796
BccI CCATC 2 cut(s) 407, 565
BceAI ACGGC 2 cut(s) 394, 822
BciT130I CCWGG 2 cut(s) 691, 796
BclI TGATCA 1 cut(s) 523
BfuAI ACCTGC 1 cut(s) 76
BglI GCCNNNNNGGC 1 cut(s) 188
BglII AGATCT 1 cut(s) 815
BisI GCNGC 1 cut(s) 810
BlsI GCNGC 1 cut(s) 811
BmcAI AGTACT 1 cut(s) 117
Bme1390I CCNGG 2 cut(s) 691, 796
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 2 cut(s) 691, 796
BmsI GCATC 3 cut(s) 71, 772, 789
BpiI GAAGAC 1 cut(s) 707
BpuEI CTTGAG 1 cut(s) 657
BsaHI GRCGYC 3 cut(s) 646, 727, 763
BsaJI CCNNGG 2 cut(s) 649, 786
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bse1I ACTGG 2 cut(s) 211, 593
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 691, 796
BseDI CCNNGG 2 cut(s) 649, 786
BseGI GGATG 2 cut(s) 25, 804
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 211, 593
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 1 cut(s) 796
BseYI CCCAGC 2 cut(s) 238, 552
BshFI GGCC 1 cut(s) 386
BshNI GGYRCC 1 cut(s) 589
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 4 cut(s) 523, 731, 739, 815
Bsp19I CCATGG 1 cut(s) 649
BspACI CCGC 1 cut(s) 587
BspANI GGCC 1 cut(s) 386
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 591
BspMI ACCTGC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 2 cut(s) 211, 593
BssECI CCNNGG 2 cut(s) 649, 786
BssMI GATC 4 cut(s) 523, 731, 739, 815
BssNI GRCGYC 3 cut(s) 646, 727, 763
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 2 cut(s) 691, 796
Bst4CI ACNGT 4 cut(s) 105, 214, 271, 542
Bst6I CTCTTC 1 cut(s) 303
BstACI GRCGYC 3 cut(s) 646, 727, 763
BstAPI GCANNNNNTGC 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 649
BstF5I GGATG 2 cut(s) 25, 804
BstKTI GATC 4 cut(s) 526, 734, 742, 818
BstMBI GATC 4 cut(s) 523, 731, 739, 815
BstMWI GCNNNNNNNGC 4 cut(s) 68, 152, 188, 755
BstNI CCWGG 2 cut(s) 691, 796
BstSCI CCNGG 2 cut(s) 689, 794
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 796
BstV2I GAAGAC 1 cut(s) 707
BstX2I RGATCY 1 cut(s) 815
BstXI CCANNNNNNTGG 1 cut(s) 656
BstYI RGATCY 1 cut(s) 815
BsuRI GGCC 1 cut(s) 386
BtgI CCRYGG 1 cut(s) 649
BtsCI GGATG 2 cut(s) 25, 804
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 1 cut(s) 516
BveI ACCTGC 1 cut(s) 76
CciI TCATGA 1 cut(s) 13
CseI GACGC 4 cut(s) 654, 755, 764, 771
Csp6I GTAC 3 cut(s) 116, 177, 421
CviAII CATG 3 cut(s) 14, 479, 650
CviQI GTAC 3 cut(s) 116, 177, 421
DpnI GATC 4 cut(s) 525, 733, 741, 817
DpnII GATC 4 cut(s) 523, 731, 739, 815
DraI TTTAAA 2 cut(s) 172, 394
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 649
EcoRII CCWGG 2 cut(s) 689, 794
EcoT14I CCWWGG 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 3 cut(s) 17, 482, 653
FaiI YATR 8 cut(s) 15, 45, 250, 282, 334, 480, 488, 651
FatI CATG 3 cut(s) 13, 478, 649
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 810
FokI GGATG 2 cut(s) 12, 811
Fsp4HI GCNGC 1 cut(s) 810
GluI GCNGC 1 cut(s) 810
GsaI CCCAGC 2 cut(s) 242, 556
HaeIII GGCC 1 cut(s) 386
HgaI GACGC 4 cut(s) 654, 755, 764, 771
Hin1I GRCGYC 3 cut(s) 646, 727, 763
Hin1II CATG 3 cut(s) 17, 482, 653
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 703, 771, 791
HphI GGTGA 2 cut(s) 57, 93
Hpy166II GTNNAC 2 cut(s) 6, 538
Hpy188I TCNGA 1 cut(s) 562
Hpy188III TCNNGA 5 cut(s) 14, 353, 674, 743, 779
Hpy8I GTNNAC 2 cut(s) 6, 538
Hpy99I CGWCG 4 cut(s) 732, 758, 808, 825
HpyAV CCTTC 2 cut(s) 132, 560
HpyCH4III ACNGT 4 cut(s) 105, 214, 271, 542
HpyCH4IV ACGT 3 cut(s) 389, 441, 727
HpyCH4V TGCA 3 cut(s) 62, 71, 615
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 152, 188, 755
HpySE526I ACGT 3 cut(s) 389, 441, 727
Hsp92I GRCGYC 3 cut(s) 646, 727, 763
Hsp92II CATG 3 cut(s) 17, 482, 653
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 4 cut(s) 523, 731, 739, 815
Lsp1109I GCAGC 1 cut(s) 796
LweI GCATC 3 cut(s) 71, 772, 789
MaeII ACGT 3 cut(s) 389, 441, 727
MaeIII GTNAC 1 cut(s) 353
MalI GATC 4 cut(s) 525, 733, 741, 817
MboI GATC 4 cut(s) 523, 731, 739, 815
MboII GAAGA 5 cut(s) 87, 188, 290, 575, 712
MflI RGATCY 1 cut(s) 815
MhlI GDGCHC 1 cut(s) 266
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 2 cut(s) 303, 426
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 3 cut(s) 697, 765, 785
MmeI TCCRAC 1 cut(s) 577
MnlI CCTC 4 cut(s) 331, 430, 675, 781
Mox20I TGGCCA 1 cut(s) 386
MscI TGGCCA 1 cut(s) 386
MseI TTAA 2 cut(s) 171, 393
Msp20I TGGCCA 1 cut(s) 386
MspR9I CCNGG 2 cut(s) 691, 796
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 2 cut(s) 691, 796
MwoI GCNNNNNNNGC 4 cut(s) 68, 152, 188, 755
NcoI CCATGG 1 cut(s) 649
NdeII GATC 4 cut(s) 523, 731, 739, 815
NlaIII CATG 3 cut(s) 17, 482, 653
NlaIV GGNNCC 1 cut(s) 591
NmeAIII GCCGAG 1 cut(s) 811
NmuCI GTSAC 1 cut(s) 353
PagI TCATGA 1 cut(s) 13
PaqCI CACCTGC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 358
PctI GAATGC 1 cut(s) 348
PfoI TCCNGGA 1 cut(s) 794
PkrI GCNGC 1 cut(s) 811
PleI GAGTC 3 cut(s) 697, 765, 785
PpsI GAGTC 3 cut(s) 697, 765, 785
Psp6I CCWGG 2 cut(s) 689, 794
PspFI CCCAGC 2 cut(s) 238, 552
PspGI CCWGG 2 cut(s) 689, 794
PspN4I GGNNCC 1 cut(s) 591
PsuI RGATCY 1 cut(s) 815
RsaI GTAC 3 cut(s) 117, 178, 422
RsaNI GTAC 3 cut(s) 116, 177, 421
SaqAI TTAA 2 cut(s) 171, 393
SatI GCNGC 1 cut(s) 810
Sau3AI GATC 4 cut(s) 523, 731, 739, 815
ScaI AGTACT 1 cut(s) 117
SchI GAGTC 3 cut(s) 697, 765, 785
ScrFI CCNGG 2 cut(s) 691, 796
SduI GDGCHC 1 cut(s) 266
SetI ASST 9 cut(s) 70, 124, 178, 244, 392, 444, 459, 692, 730
SfaNI GCATC 3 cut(s) 71, 772, 789
SmlI CTYRAG 1 cut(s) 672
SmoI CTYRAG 1 cut(s) 672
Sse9I AATT 2 cut(s) 303, 426
SsiI CCGC 1 cut(s) 587
SspI AATATT 1 cut(s) 532
StyD4I CCNGG 2 cut(s) 689, 794
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 4 cut(s) 105, 214, 271, 542
TaiI ACGT 3 cut(s) 392, 444, 730
TaqI TCGA 4 cut(s) 373, 730, 738, 823
TasI AATT 2 cut(s) 303, 426
TatI WGTACW 1 cut(s) 115
Tru1I TTAA 2 cut(s) 171, 393
Tru9I TTAA 2 cut(s) 171, 393
TscAI CASTG 1 cut(s) 516
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 1 cut(s) 809
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 4 cut(s) 30, 87, 454, 467
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 1 cut(s) 516
XmiI GTMKAC 1 cut(s) 5
ZraI GACGTC 1 cut(s) 728
ZrmI AGTACT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.