pycom11g06150

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013979
Physical Location & Seq
Forward (+)
4739186 .. 4739827
642 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g06150.1

Sequence Viewer

Length: 642 bp
ATGGCTGCGGTCAAGGAAACACAGCAACCACTTTTGGATAATAATGCAGGAGGAGGAGGATCAAGTTCAATAGCCCCAAAACCAAAACAACCAAAAACCCCGGCACGAAAGGCCATTAGAAAGACATTCAAAGGCACAGCCCATTTGTCTAATCTTCTCCCCACGGGGACCGTCCTCGTGTTCCAAATGTTCTCCCCCGCTTTCACACGCCAAGGGAAGTGCCCGGCCGTCCTCAACCAAACCATGACTGTGCTCCTCCTAACTTTCTGCAGCCTTACCTGCTTCCTTATGCGCTTCACCGACAGCTTGAGGGACGAAAGAGGCAAGGTCCGATACGGGTTGGCGACATCTAAAGGGTTGTGGATTCTCGACGGTTCCAAAATCACACTTGCGCCGGAGGAGGCAGATAAATATAGGGTAAAGTTCAGAGATTTTTTCCATGCCCTCATGTCTGTACTTGTATTTGCTGCGGTGGCAATGTTTGATAAAAATGTCGTCAATTGCTTCTACCCCAAGCCATCGGAGGAGGCCAGGCAGCTTTTAGTGGCGTTCCCTGTTGGGATCGGTATCGCATGCAGCTTGTTGTTTGTTTTATTCCCCTCCAGACGCCATGGAATTGGCTTCCCTCTCTCTCGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

214

Amino Acids

23.42

Weight (kDa)

10.03

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 45 - 208 4.5e-68 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28485 AT4G28485
fragaria_vesca FvH4_6g26701
malus_domestica MD03G1070300.v1.1 MD11G1074100.v1.1
prunus_persica Prupe.4G053000_v2.0.a1
pyrus_communis pycom11g06150
rosa_chinensis RchiOBHm_Chr0c19g0500031
rosa_laevigata RLG00000018985
rosa_multiflora Rmu_sc0008568.1_g000003
rosa_roxburghii Rroxscaffold_2G00115750
rosa_rugosa Rorug02G0277600
rosa_samantha Rh2AG328200 Rh2BG338300 Rh2CG315300 Rh2DG355200
rosa_wichuraiana Rw2G026620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 287
AciI CCGC 3 cut(s) 8, 198, 470
AclWI GGATC 2 cut(s) 67, 569
AcoI YGGCCR 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 607
AfaI GTAC 1 cut(s) 456
AgsI TTSAA 2 cut(s) 69, 130
AjnI CCWGG 1 cut(s) 530
AluBI AGCT 4 cut(s) 306, 538, 579, 639
AluI AGCT 4 cut(s) 306, 538, 579, 639
Alw21I GWGCWC 1 cut(s) 255
AlwI GGATC 2 cut(s) 67, 569
AoxI GGCC 3 cut(s) 111, 225, 528
ApeKI GCWGC 5 cut(s) 5, 270, 467, 535, 576
AspLEI GCGC 2 cut(s) 294, 394
AspS9I GGNCC 2 cut(s) 168, 328
AsuC2I CCSGG 2 cut(s) 101, 224
AsuHPI GGTGA 1 cut(s) 289
AvaII GGWCC 2 cut(s) 168, 328
BaeGI GKGCMC 1 cut(s) 224
BauI CACGAG 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 4 cut(s) 282, 454, 547, 588
BccI CCATC 1 cut(s) 526
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 532
BcnI CCSGG 2 cut(s) 101, 224
BfaI CTAG 1 cut(s) 640
BfmI CTRYAG 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 287
BisI GCNGC 5 cut(s) 6, 271, 468, 536, 577
BlsI GCNGC 5 cut(s) 7, 272, 469, 537, 578
Bme1390I CCNGG 3 cut(s) 101, 224, 532
Bme18I GGWCC 2 cut(s) 168, 328
BmgT120I GGNCC 2 cut(s) 168, 328
BmiI GGNNCC 2 cut(s) 169, 376
BmrFI CCNGG 3 cut(s) 101, 224, 532
BpmI CTGGAG 1 cut(s) 586
BpuEI CTTGAG 1 cut(s) 328
BpuMI CCSGG 2 cut(s) 101, 224
BsaBI GATNNNNATC 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 607
BsaJI CCNNGG 4 cut(s) 99, 162, 211, 610
Bse3DI GCAATG 1 cut(s) 483
Bse8I GATNNNNATC 1 cut(s) 566
BseBI CCWGG 1 cut(s) 532
BseDI CCNNGG 4 cut(s) 99, 162, 211, 610
BseJI GATNNNNATC 1 cut(s) 566
BseMI GCAATG 1 cut(s) 483
BseRI GAGGAG 5 cut(s) 66, 69, 245, 413, 539
BseSI GKGCMC 1 cut(s) 224
BseX3I CGGCCG 1 cut(s) 225
BseXI GCAGC 4 cut(s) 282, 454, 547, 588
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 3 cut(s) 113, 227, 530
BsiEI CGRYCG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 3 cut(s) 101, 224, 395
BslFI GGGAC 2 cut(s) 181, 326
BsmFI GGGAC 2 cut(s) 181, 326
BsnI GGCC 3 cut(s) 113, 227, 530
Bsp1286I GDGCHC 2 cut(s) 224, 255
Bsp143I GATC 2 cut(s) 59, 561
Bsp19I CCATGG 1 cut(s) 610
BspACI CCGC 3 cut(s) 8, 198, 470
BspANI GGCC 3 cut(s) 113, 227, 530
BspLI GGNNCC 2 cut(s) 169, 376
BspMAI CTGCAG 1 cut(s) 272
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 2 cut(s) 67, 569
BsrDI GCAATG 1 cut(s) 483
BssECI CCNNGG 4 cut(s) 99, 162, 211, 610
BssMI GATC 2 cut(s) 59, 561
BssNI GRCGYC 1 cut(s) 607
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 2 cut(s) 211, 610
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 3 cut(s) 172, 250, 374
BstACI GRCGYC 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 574
BstDSI CCRYGG 2 cut(s) 162, 610
BstHHI GCGC 2 cut(s) 294, 394
BstKTI GATC 2 cut(s) 62, 564
BstMBI GATC 2 cut(s) 59, 561
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 3 cut(s) 110, 279, 473
BstNI CCWGG 1 cut(s) 532
BstNSI RCATGY 1 cut(s) 576
BstSCI CCNGG 3 cut(s) 99, 222, 530
BstSFI CTRYAG 1 cut(s) 268
BstSLI GKGCMC 1 cut(s) 224
BstV1I GCAGC 4 cut(s) 282, 454, 547, 588
BstXI CCANNNNNNTGG 1 cut(s) 617
BstZI CGGCCG 1 cut(s) 225
BsuRI GGCC 3 cut(s) 113, 227, 530
BtgI CCRYGG 2 cut(s) 162, 610
BveI ACCTGC 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 574
CfoI GCGC 2 cut(s) 294, 394
Cfr13I GGNCC 2 cut(s) 168, 328
CseI GACGC 1 cut(s) 615
Csp6I GTAC 1 cut(s) 455
CviAII CATG 5 cut(s) 244, 440, 448, 573, 611
CviQI GTAC 1 cut(s) 455
DpnI GATC 2 cut(s) 61, 563
DpnII GATC 2 cut(s) 59, 561
EaeI YGGCCR 1 cut(s) 225
EagI CGGCCG 1 cut(s) 225
EclXI CGGCCG 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 211, 610
Eco47I GGWCC 2 cut(s) 168, 328
Eco52I CGGCCG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 530
EcoT14I CCWWGG 2 cut(s) 211, 610
ErhI CCWWGG 2 cut(s) 211, 610
FaeI CATG 5 cut(s) 247, 443, 451, 576, 614
FaiI YATR 7 cut(s) 245, 290, 414, 441, 449, 574, 612
FaqI GGGAC 2 cut(s) 181, 326
FatI CATG 5 cut(s) 243, 439, 447, 572, 610
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 5 cut(s) 6, 271, 468, 536, 577
Fsp4HI GCNGC 5 cut(s) 6, 271, 468, 536, 577
FspBI CTAG 1 cut(s) 640
GlaI GCGC 2 cut(s) 293, 393
GluI GCNGC 5 cut(s) 6, 271, 468, 536, 577
GsuI CTGGAG 1 cut(s) 586
HaeIII GGCC 3 cut(s) 113, 227, 530
HapII CCGG 3 cut(s) 101, 224, 395
HgaI GACGC 1 cut(s) 615
HhaI GCGC 2 cut(s) 294, 394
Hin1I GRCGYC 1 cut(s) 607
Hin1II CATG 5 cut(s) 247, 443, 451, 576, 614
Hin6I GCGC 2 cut(s) 292, 392
HinP1I GCGC 2 cut(s) 292, 392
HinfI GANTC 1 cut(s) 364
HpaII CCGG 3 cut(s) 101, 224, 395
HphI GGTGA 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 332, 428, 523
Hpy188III TCNNGA 3 cut(s) 368, 603, 633
Hpy99I CGWCG 1 cut(s) 374
HpyCH4III ACNGT 3 cut(s) 172, 250, 374
HpyCH4V TGCA 3 cut(s) 47, 270, 576
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 279, 473
Hsp92I GRCGYC 1 cut(s) 607
Hsp92II CATG 5 cut(s) 247, 443, 451, 576, 614
HspAI GCGC 2 cut(s) 292, 392
Kzo9I GATC 2 cut(s) 59, 561
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 9 cut(s) 33, 114, 237, 292, 408, 517, 544, 567, 616
Lsp1109I GCAGC 4 cut(s) 282, 454, 547, 588
MaeI CTAG 1 cut(s) 640
MalI GATC 2 cut(s) 61, 563
MboI GATC 2 cut(s) 59, 561
MboII GAAGA 1 cut(s) 146
MfeI CAATTG 1 cut(s) 499
MhlI GDGCHC 2 cut(s) 224, 255
MluCI AATT 2 cut(s) 499, 615
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 3 cut(s) 101, 224, 395
MspR9I CCNGG 3 cut(s) 101, 224, 532
MunI CAATTG 1 cut(s) 499
MvaI CCWGG 1 cut(s) 532
MwoI GCNNNNNNNGC 3 cut(s) 110, 279, 473
NciI CCSGG 2 cut(s) 101, 224
NcoI CCATGG 1 cut(s) 610
NdeII GATC 2 cut(s) 59, 561
NlaIII CATG 5 cut(s) 247, 443, 451, 576, 614
NlaIV GGNNCC 2 cut(s) 169, 376
NspI RCATGY 1 cut(s) 576
PaeI GCATGC 1 cut(s) 576
PfeI GAWTC 1 cut(s) 364
PkrI GCNGC 5 cut(s) 7, 272, 469, 537, 578
Psp6I CCWGG 1 cut(s) 530
PspGI CCWGG 1 cut(s) 530
PspN4I GGNNCC 2 cut(s) 169, 376
PspPI GGNCC 2 cut(s) 168, 328
PstI CTGCAG 1 cut(s) 272
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
RseI CAYNNNNRTG 1 cut(s) 248
SatI GCNGC 5 cut(s) 6, 271, 468, 536, 577
Sau3AI GATC 2 cut(s) 59, 561
Sau96I GGNCC 2 cut(s) 168, 328
ScrFI CCNGG 3 cut(s) 101, 224, 532
SduI GDGCHC 2 cut(s) 224, 255
SetI ASST 6 cut(s) 281, 308, 330, 540, 581, 641
SfcI CTRYAG 1 cut(s) 268
SinI GGWCC 2 cut(s) 168, 328
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
SphI GCATGC 1 cut(s) 576
Sse9I AATT 2 cut(s) 499, 615
SsiI CCGC 3 cut(s) 8, 198, 470
SspMI CTAG 1 cut(s) 640
StyD4I CCNGG 3 cut(s) 99, 222, 530
StyI CCWWGG 2 cut(s) 211, 610
TaaI ACNGT 3 cut(s) 172, 250, 374
TaqI TCGA 2 cut(s) 369, 634
TasI AATT 2 cut(s) 499, 615
TatI WGTACW 1 cut(s) 454
TfiI GAWTC 1 cut(s) 364
TseI GCWGC 5 cut(s) 5, 270, 467, 535, 576
VpaK11BI GGWCC 2 cut(s) 168, 328
XceI RCATGY 1 cut(s) 576
XspI CTAG 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.