Prupe.4G053000_v2.0.a1

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013979
Physical Location & Seq
Reverse (-)
2559677 .. 2560306
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G053000.1

Sequence Viewer

Length: 630 bp
ATGGCTGCACCTGCACTTCAAGAAACATATGAGCAACCACTGTTGGAAAATAATGCAGCATCAATTGCGCCAAAACCGCCAAAAACCCCTGCACAAAAGGCCATTAGAAAGACCTTTAAAGGCACAGCCCATCTGTCAAATCTTCTTCCCACCGGAACGGTCCTCGTTTTCCAAATGTTCTCCCCGGGTTTCACACGCCAAGGGCAGTGCCCTACCCCCATCAACAAAACCATGACGCTAGGACTTCTAATAGTCTGCAGCCTTACCTGCTTCCTCTTGTGCTTCACCGACAGCTTGAGGGACGAACGGGGCAAGGTTCGATACGGGTTGGCGACTTTTAAAGGGTTGTGGGTCATCGACGGGTCGAAAGTCCCCATTGCACCGGAGGAGGTGGCCAAGTACAGGCTGAGATTCATTGATTTCTTCCATGCCTTGATGTCCATATTTGTATTTGCTGCACTGGCTTTGGTTGATCAGAATATTGTCAACTGTTTCTACCCCAAGCCGTCGGAGGAGGGCAAGCAGCTTTTAGCGGCGTTCCCTGTCGGAATTGCTGTTGTGTGCAGCTTGTTGTTTGTCCTGTTCCCCACCAAGCGTCATGGAATTGGCTTCCCTCTCTCTCGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

210

Amino Acids

22.99

Weight (kDa)

9.43

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28485 AT4G28485
fragaria_vesca FvH4_6g26701
malus_domestica MD03G1070300.v1.1 MD11G1074100.v1.1
prunus_persica Prupe.4G053000_v2.0.a1
pyrus_communis pycom11g06150
rosa_chinensis RchiOBHm_Chr0c19g0500031
rosa_laevigata RLG00000018985
rosa_multiflora Rmu_sc0008568.1_g000003
rosa_roxburghii Rroxscaffold_2G00115750
rosa_rugosa Rorug02G0277600
rosa_samantha Rh2AG328200 Rh2BG338300 Rh2CG315300 Rh2DG355200
rosa_wichuraiana Rw2G026620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
Acc36I ACCTGC 2 cut(s) 19, 275
AciI CCGC 2 cut(s) 77, 533
AcoI YGGCCR 1 cut(s) 393
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 4 cut(s) 294, 526, 567, 627
AluI AGCT 4 cut(s) 294, 526, 567, 627
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 2 cut(s) 99, 393
ApeKI GCWGC 6 cut(s) 5, 56, 258, 455, 523, 564
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 2 cut(s) 185, 186
AsuHPI GGTGA 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 212
BalI TGGCCA 1 cut(s) 395
BbvI GCAGC 5 cut(s) 68, 270, 442, 535, 576
BccI CCATC 2 cut(s) 138, 227
BceAI ACGGC 1 cut(s) 490
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 2 cut(s) 185, 186
BfaI CTAG 2 cut(s) 239, 628
BfmI CTRYAG 1 cut(s) 256
BfuAI ACCTGC 2 cut(s) 19, 275
BisI GCNGC 7 cut(s) 6, 57, 259, 456, 524, 534, 565
BlsI GCNGC 7 cut(s) 7, 58, 260, 457, 525, 535, 566
Bme1390I CCNGG 2 cut(s) 185, 186
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 160
BmrFI CCNGG 2 cut(s) 185, 186
BmsI GCATC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 316
BpuMI CCSGG 2 cut(s) 185, 186
BsaJI CCNNGG 3 cut(s) 183, 184, 199
BsaWI WCCGGW 2 cut(s) 152, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 465
Bse3DI GCAATG 1 cut(s) 375
BseDI CCNNGG 3 cut(s) 183, 184, 199
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 465
BseRI GAGGAG 2 cut(s) 401, 527
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 5 cut(s) 68, 270, 442, 535, 576
BsgI GTGCAG 3 cut(s) 75, 441, 583
BshFI GGCC 2 cut(s) 101, 395
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 3 cut(s) 153, 185, 383
BslFI GGGAC 2 cut(s) 314, 356
BslI CCNNNNNNNGG 1 cut(s) 402
BsmFI GGGAC 2 cut(s) 314, 356
BsnI GGCC 2 cut(s) 101, 395
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 2 cut(s) 77, 533
BspANI GGCC 2 cut(s) 101, 395
BspCNI CTCAG 1 cut(s) 399
BspMAI CTGCAG 1 cut(s) 260
BspMI ACCTGC 2 cut(s) 19, 275
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 183, 184, 199
BssMI GATC 1 cut(s) 472
BssT1I CCWWGG 1 cut(s) 199
Bst4CI ACNGT 3 cut(s) 42, 160, 491
BstAPI GCANNNNNTGC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 1 cut(s) 407
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 1 cut(s) 475
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 6 cut(s) 11, 65, 76, 98, 267, 461
BstSCI CCNGG 2 cut(s) 183, 184
BstSFI CTRYAG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 212
BstV1I GCAGC 5 cut(s) 68, 270, 442, 535, 576
BsuRI GGCC 2 cut(s) 101, 395
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 3 cut(s) 38, 212, 458
BveI ACCTGC 2 cut(s) 19, 275
Cac8I GCNNGC 1 cut(s) 521
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 160
Cfr9I CCCGGG 1 cut(s) 184
CseI GACGC 2 cut(s) 244, 584
Csp6I GTAC 1 cut(s) 400
CviAII CATG 3 cut(s) 232, 428, 599
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 1 cut(s) 407
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
DraI TTTAAA 2 cut(s) 118, 340
EaeI YGGCCR 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 3 cut(s) 235, 431, 602
FaiI YATR 6 cut(s) 28, 30, 233, 429, 443, 600
FaqI GGGAC 2 cut(s) 314, 356
FatI CATG 3 cut(s) 231, 427, 598
FauNDI CATATG 1 cut(s) 28
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 7 cut(s) 6, 57, 259, 456, 524, 534, 565
Fsp4HI GCNGC 7 cut(s) 6, 57, 259, 456, 524, 534, 565
FspBI CTAG 2 cut(s) 239, 628
GlaI GCGC 1 cut(s) 69
GluI GCNGC 7 cut(s) 6, 57, 259, 456, 524, 534, 565
HaeIII GGCC 2 cut(s) 101, 395
HapII CCGG 3 cut(s) 153, 185, 383
HgaI GACGC 2 cut(s) 244, 584
HhaI GCGC 1 cut(s) 70
Hin1II CATG 3 cut(s) 235, 431, 602
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 1 cut(s) 411
HpaII CCGG 3 cut(s) 153, 185, 383
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 3 cut(s) 477, 511, 548
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 2 cut(s) 362, 511
HpyCH4III ACNGT 3 cut(s) 42, 160, 491
HpyCH4V TGCA 8 cut(s) 8, 14, 56, 92, 258, 380, 458, 564
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 65, 76, 98, 267, 461
HpyF3I CTNAG 1 cut(s) 407
Hsp92II CATG 3 cut(s) 235, 431, 602
HspAI GCGC 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 1 cut(s) 472
Lsp1109I GCAGC 5 cut(s) 68, 270, 442, 535, 576
LweI GCATC 1 cut(s) 68
MaeI CTAG 2 cut(s) 239, 628
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MboII GAAGA 3 cut(s) 134, 137, 415
MfeI CAATTG 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 212
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 3 cut(s) 63, 549, 603
MluNI TGGCCA 1 cut(s) 395
MmeI TCCRAC 3 cut(s) 24, 489, 526
MnlI CCTC 8 cut(s) 173, 284, 291, 379, 382, 505, 508, 624
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 2 cut(s) 117, 339
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 3 cut(s) 153, 185, 383
MspR9I CCNGG 2 cut(s) 185, 186
MunI CAATTG 1 cut(s) 63
MwoI GCNNNNNNNGC 6 cut(s) 11, 65, 76, 98, 267, 461
NciI CCSGG 2 cut(s) 185, 186
NdeI CATATG 1 cut(s) 28
NdeII GATC 1 cut(s) 472
NlaIII CATG 3 cut(s) 235, 431, 602
PaqCI CACCTGC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 411
PkrI GCNGC 7 cut(s) 7, 58, 260, 457, 525, 535, 566
PspPI GGNCC 1 cut(s) 160
PstI CTGCAG 1 cut(s) 260
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SaqAI TTAA 2 cut(s) 117, 339
SatI GCNGC 7 cut(s) 6, 57, 259, 456, 524, 534, 565
Sau3AI GATC 1 cut(s) 472
Sau96I GGNCC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 185, 186
SduI GDGCHC 1 cut(s) 212
SetI ASST 9 cut(s) 13, 116, 269, 296, 318, 393, 528, 569, 629
SfaNI GCATC 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 256
SinI GGWCC 1 cut(s) 160
SmaI CCCGGG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 3 cut(s) 63, 549, 603
SsiI CCGC 2 cut(s) 77, 533
SspI AATATT 1 cut(s) 481
SspMI CTAG 2 cut(s) 239, 628
StyD4I CCNGG 2 cut(s) 183, 184
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 3 cut(s) 42, 160, 491
TaqI TCGA 3 cut(s) 319, 357, 365
TasI AATT 3 cut(s) 63, 549, 603
TatI WGTACW 1 cut(s) 399
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 1 cut(s) 411
Tru1I TTAA 2 cut(s) 117, 339
Tru9I TTAA 2 cut(s) 117, 339
TscAI CASTG 3 cut(s) 45, 212, 465
TseI GCWGC 6 cut(s) 5, 56, 258, 455, 523, 564
TspDTI ATGAA 1 cut(s) 403
TspMI CCCGGG 1 cut(s) 184
TspRI CASTG 3 cut(s) 45, 212, 465
VpaK11BI GGWCC 1 cut(s) 160
XmaI CCCGGG 1 cut(s) 184
XspI CTAG 2 cut(s) 239, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.