Rroxscaffold_2G00115750

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013979
Physical Location & Seq
Reverse (-)
42192487 .. 42196891
4405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115750.1

Sequence Viewer

Length: 576 bp
ATGGTTCATAGGGCTACGGCTCACGAGAGAAGCTATCAAATTAATTTGAGTTCTGCCATGGCTACACTCCAAGAAACACATCATCCACTTTTGGAGAATTATAGTAGTAGTAATGATTCACCACCGGCAACAGCATCTGCATCATCACCATTACCGTCATCGTTAATAGCAGCTTCAAAACCATCAAAAACACCAGCACAAAAGGCAATGAGAAAGACATTCAAAGGCACAGCCCATTTGGCCAATCTTCTCCCAACGGAACAGTTCTCACATTCCAAATGTTCTCTCCAGCTTTTACACACCAAGGCAAGTGCCCCACGAGTTGCCAACCATACGATGACATTATCCCTTCTAATCTTTTGCTCGGTCTCCTCTTTTCTTTTGTGTTTCACCGATAGCTTCCGCGACGGGCGGGGAAAAGTTCGATATGGGTTGGCCACTTTCAAAGGATTGTTTGTGCTTGACGGGTCTCACACGATTGGGGCGGAGGAGGCAGCAAAATACAAGCTGACATTCATTGATTTCTTCCATGCTTTTATGTACGTGTTTGGTGTTTGGGGCGGTGGCATCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

191

Amino Acids

20.78

Weight (kDa)

9.48

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 76 - 182 1.4e-26 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28485 AT4G28485
fragaria_vesca FvH4_6g26701
malus_domestica MD03G1070300.v1.1 MD11G1074100.v1.1
prunus_persica Prupe.4G053000_v2.0.a1
pyrus_communis pycom11g06150
rosa_chinensis RchiOBHm_Chr0c19g0500031
rosa_laevigata RLG00000018985
rosa_multiflora Rmu_sc0008568.1_g000003
rosa_roxburghii Rroxscaffold_2G00115750
rosa_rugosa Rorug02G0277600
rosa_samantha Rh2AG328200 Rh2BG338300 Rh2CG315300 Rh2DG355200
rosa_wichuraiana Rw2G026620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 405
AciI CCGC 4 cut(s) 403, 412, 485, 561
AcoI YGGCCR 2 cut(s) 240, 435
AfaI GTAC 1 cut(s) 542
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 3 cut(s) 177, 223, 445
AluBI AGCT 5 cut(s) 33, 173, 292, 399, 508
AluI AGCT 5 cut(s) 33, 173, 292, 399, 508
Alw26I GTCTC 2 cut(s) 373, 474
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 2 cut(s) 240, 435
ApeKI GCWGC 2 cut(s) 170, 494
AseI ATTAAT 1 cut(s) 42
AsuHPI GGTGA 3 cut(s) 111, 138, 382
BaeGI GKGCMC 1 cut(s) 316
BalI TGGCCA 2 cut(s) 242, 437
BauI CACGAG 2 cut(s) 23, 318
BbvI GCAGC 2 cut(s) 182, 506
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 373, 474
BglI GCCNNNNNGGC 1 cut(s) 239
BisI GCNGC 2 cut(s) 171, 495
BlsI GCNGC 2 cut(s) 172, 496
BmsI GCATC 2 cut(s) 143, 149
BpmI CTGGAG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 544
BsaI GGTCTC 2 cut(s) 373, 474
BsaJI CCNNGG 2 cut(s) 57, 303
Bse118I RCCGGY 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 57, 303
BseGI GGATG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 213
BseRI GAGGAG 2 cut(s) 361, 503
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 2 cut(s) 182, 506
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 2 cut(s) 242, 437
BsiSI CCGG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 373, 474
BsnI GGCC 2 cut(s) 242, 437
Bso31I GGTCTC 2 cut(s) 373, 474
Bsp1286I GDGCHC 1 cut(s) 316
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 4 cut(s) 403, 412, 485, 561
BspANI GGCC 2 cut(s) 242, 437
BspFNI CGCG 1 cut(s) 405
BspTNI GGTCTC 2 cut(s) 373, 474
BsrDI GCAATG 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 57, 303
BssSI CACGAG 2 cut(s) 23, 318
BssT1I CCWWGG 2 cut(s) 57, 303
Bst2BI CACGAG 2 cut(s) 23, 318
Bst4CI ACNGT 2 cut(s) 156, 264
BstBAI YACGTR 1 cut(s) 544
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 405
BstMAI GTCTC 2 cut(s) 373, 474
BstMWI GCNNNNNNNGC 3 cut(s) 203, 239, 491
BstSLI GKGCMC 1 cut(s) 316
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 2 cut(s) 182, 506
BsuRI GGCC 2 cut(s) 242, 437
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 82
CaiI CAGNNNCTG 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 124
Csp6I GTAC 1 cut(s) 541
CviAII CATG 2 cut(s) 58, 530
CviQI GTAC 1 cut(s) 541
EaeI YGGCCR 2 cut(s) 240, 435
EciI GGCGGA 1 cut(s) 500
Eco130I CCWWGG 2 cut(s) 57, 303
Eco31I GGTCTC 2 cut(s) 373, 474
EcoT14I CCWWGG 2 cut(s) 57, 303
ErhI CCWWGG 2 cut(s) 57, 303
FaeI CATG 2 cut(s) 61, 533
FaiI YATR 7 cut(s) 9, 59, 102, 333, 429, 531, 539
FatI CATG 2 cut(s) 57, 529
FauI CCCGC 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 171, 495
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 171, 495
GluI GCNGC 2 cut(s) 171, 495
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 2 cut(s) 242, 437
HapII CCGG 1 cut(s) 125
Hin1II CATG 2 cut(s) 61, 533
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 125
HphI GGTGA 3 cut(s) 111, 138, 382
Hpy188III TCNNGA 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 1 cut(s) 359
HpyCH4III ACNGT 2 cut(s) 156, 264
HpyCH4IV ACGT 1 cut(s) 543
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 239, 491
HpySE526I ACGT 1 cut(s) 543
Hsp92II CATG 2 cut(s) 61, 533
LpnPI CCDG 3 cut(s) 138, 207, 302
Lsp1109I GCAGC 2 cut(s) 182, 506
LweI GCATC 2 cut(s) 143, 149
MaeII ACGT 1 cut(s) 543
MboII GAAGA 2 cut(s) 239, 517
MhlI GDGCHC 1 cut(s) 316
MlsI TGGCCA 2 cut(s) 242, 437
MluCI AATT 3 cut(s) 39, 43, 97
MluNI TGGCCA 2 cut(s) 242, 437
MnlI CCTC 3 cut(s) 382, 481, 484
Mox20I TGGCCA 2 cut(s) 242, 437
MscI TGGCCA 2 cut(s) 242, 437
MseI TTAA 2 cut(s) 42, 164
Msp20I TGGCCA 2 cut(s) 242, 437
MspI CCGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 203, 239, 491
NcoI CCATGG 1 cut(s) 57
NlaIII CATG 2 cut(s) 61, 533
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 172, 496
Ppu21I YACGTR 1 cut(s) 544
PshBI ATTAAT 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
SaqAI TTAA 2 cut(s) 42, 164
SatI GCNGC 2 cut(s) 171, 495
SduI GDGCHC 1 cut(s) 316
SetI ASST 6 cut(s) 35, 175, 294, 401, 510, 546
SfaNI GCATC 2 cut(s) 143, 149
Sse9I AATT 3 cut(s) 39, 43, 97
SsiI CCGC 4 cut(s) 403, 412, 485, 561
StyI CCWWGG 2 cut(s) 57, 303
TaaI ACNGT 2 cut(s) 156, 264
TaiI ACGT 1 cut(s) 546
TaqI TCGA 1 cut(s) 424
TaqII GACCGA 1 cut(s) 355
TasI AATT 3 cut(s) 39, 43, 97
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 42, 164
Tru9I TTAA 2 cut(s) 42, 164
TseI GCWGC 2 cut(s) 170, 494
TspDTI ATGAA 1 cut(s) 505
TspGWI ACGGA 1 cut(s) 272
VspI ATTAAT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.