MD11G1074100.v1.1

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013979
Physical Location & Seq
Forward (+)
6262739 .. 6263389
651 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1074100.v1.1.491

Sequence Viewer

Length: 651 bp
ATGGCTGCGGTCGAGGAAACACAGCAACCACTTTTGGATAATAATGCAGGAGGAGGAGGAGGAGAAGGATCAAGTTCAATAGCCCCAAAGCCAAAACAACCGAAAACCCCGGCACGAAAGGCCATTAGAAAGACCTTCAAAGGCACGGCCCATTTGTCTAATCTTCTCCCCACGGGGACCGTCCTCGTGTTCCAAATGTTCTCCCCCGCTTTCACACGCCAAGGGAAGTGCCCGGCCGTCCTCAACCAAACCATGACTGTGCTCCTCCTAACTTTCTGCAGCCTTACCTGCTTCCTTATGCGCTTCACCGACAGCTTGAGGGACGAAAGAGGCAAGGTCCGATACGGGTTGGCGACATCTAAAGGGTTGTGGATTCTCGACGGTTCCAAAATCACACTTGCGCCGGAGGAGGCAGATAAATATAGGGTAAAGTTCAGAGATTTTTTCCATGCCTTCATGTCCGTACTTGTATTTGCTGCGGTGGCAATGTTTGATCAAAATGTCGTCAATTGCTTCTACCCCAAGCCATCGGAGGAGGCCAGGCAGCTTTTGGTGGCGTTCCCTGTCGGAATGGGTATCGCATGCAGCTTGTTGTTTGTTTTATTCCCCTCCAGACGCCATGGAATTGGCTTCCCTCTCTCTCGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

217

Amino Acids

23.72

Weight (kDa)

9.74

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 48 - 211 2.8e-68 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28485 AT4G28485
fragaria_vesca FvH4_6g26701
malus_domestica MD03G1070300.v1.1 MD11G1074100.v1.1
prunus_persica Prupe.4G053000_v2.0.a1
pyrus_communis pycom11g06150
rosa_chinensis RchiOBHm_Chr0c19g0500031
rosa_laevigata RLG00000018985
rosa_multiflora Rmu_sc0008568.1_g000003
rosa_roxburghii Rroxscaffold_2G00115750
rosa_rugosa Rorug02G0277600
rosa_samantha Rh2AG328200 Rh2BG338300 Rh2CG315300 Rh2DG355200
rosa_wichuraiana Rw2G026620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 296
AciI CCGC 3 cut(s) 8, 207, 479
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 616
AfaI GTAC 1 cut(s) 465
AgsI TTSAA 2 cut(s) 78, 139
AjnI CCWGG 1 cut(s) 539
AluBI AGCT 4 cut(s) 315, 547, 588, 648
AluI AGCT 4 cut(s) 315, 547, 588, 648
Alw21I GWGCWC 1 cut(s) 264
AlwI GGATC 1 cut(s) 76
AoxI GGCC 4 cut(s) 120, 147, 234, 537
ApeKI GCWGC 5 cut(s) 5, 279, 476, 544, 585
AspLEI GCGC 2 cut(s) 303, 403
AspS9I GGNCC 3 cut(s) 148, 177, 337
AsuC2I CCSGG 2 cut(s) 110, 233
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 2 cut(s) 177, 337
BaeGI GKGCMC 1 cut(s) 233
BauI CACGAG 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 291, 463, 556, 597
BccI CCATC 1 cut(s) 535
BceAI ACGGC 2 cut(s) 162, 221
BciT130I CCWGG 1 cut(s) 541
BclI TGATCA 1 cut(s) 493
BcnI CCSGG 2 cut(s) 110, 233
BfaI CTAG 1 cut(s) 649
BfmI CTRYAG 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 5 cut(s) 6, 280, 477, 545, 586
BlsI GCNGC 5 cut(s) 7, 281, 478, 546, 587
Bme1390I CCNGG 3 cut(s) 110, 233, 541
Bme18I GGWCC 2 cut(s) 177, 337
BmgT120I GGNCC 3 cut(s) 148, 177, 337
BmiI GGNNCC 2 cut(s) 178, 385
BmrFI CCNGG 3 cut(s) 110, 233, 541
BpmI CTGGAG 1 cut(s) 595
BpuEI CTTGAG 1 cut(s) 337
BpuMI CCSGG 2 cut(s) 110, 233
BsaHI GRCGYC 1 cut(s) 616
BsaJI CCNNGG 4 cut(s) 108, 171, 220, 619
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 1 cut(s) 541
BseDI CCNNGG 4 cut(s) 108, 171, 220, 619
BseMI GCAATG 1 cut(s) 492
BseRI GAGGAG 7 cut(s) 66, 69, 72, 75, 254, 422, 548
BseSI GKGCMC 1 cut(s) 233
BseX3I CGGCCG 1 cut(s) 234
BseXI GCAGC 4 cut(s) 291, 463, 556, 597
Bsh1285I CGRYCG 2 cut(s) 12, 237
BshFI GGCC 4 cut(s) 122, 149, 236, 539
BsiEI CGRYCG 2 cut(s) 12, 237
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 3 cut(s) 110, 233, 404
BslFI GGGAC 2 cut(s) 190, 335
BsmFI GGGAC 2 cut(s) 190, 335
BsnI GGCC 4 cut(s) 122, 149, 236, 539
Bsp1286I GDGCHC 2 cut(s) 233, 264
Bsp143I GATC 2 cut(s) 68, 493
Bsp19I CCATGG 1 cut(s) 619
BspACI CCGC 3 cut(s) 8, 207, 479
BspANI GGCC 4 cut(s) 122, 149, 236, 539
BspLI GGNNCC 2 cut(s) 178, 385
BspMAI CTGCAG 1 cut(s) 281
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 492
BssECI CCNNGG 4 cut(s) 108, 171, 220, 619
BssMI GATC 2 cut(s) 68, 493
BssNI GRCGYC 1 cut(s) 616
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 2 cut(s) 220, 619
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 541
Bst4CI ACNGT 3 cut(s) 181, 259, 383
BstACI GRCGYC 1 cut(s) 616
BstC8I GCNNGC 1 cut(s) 583
BstDSI CCRYGG 2 cut(s) 171, 619
BstHHI GCGC 2 cut(s) 303, 403
BstKTI GATC 2 cut(s) 71, 496
BstMBI GATC 2 cut(s) 68, 493
BstMCI CGRYCG 2 cut(s) 12, 237
BstMWI GCNNNNNNNGC 3 cut(s) 119, 288, 482
BstNI CCWGG 1 cut(s) 541
BstNSI RCATGY 1 cut(s) 585
BstSCI CCNGG 3 cut(s) 108, 231, 539
BstSFI CTRYAG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 233
BstV1I GCAGC 4 cut(s) 291, 463, 556, 597
BstXI CCANNNNNNTGG 1 cut(s) 626
BstZI CGGCCG 1 cut(s) 234
BsuRI GGCC 4 cut(s) 122, 149, 236, 539
BtgI CCRYGG 2 cut(s) 171, 619
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 583
CfoI GCGC 2 cut(s) 303, 403
Cfr13I GGNCC 3 cut(s) 148, 177, 337
CseI GACGC 1 cut(s) 624
Csp6I GTAC 1 cut(s) 464
CviAII CATG 5 cut(s) 253, 449, 457, 582, 620
CviQI GTAC 1 cut(s) 464
DpnI GATC 2 cut(s) 70, 495
DpnII GATC 2 cut(s) 68, 493
EaeI YGGCCR 1 cut(s) 234
EagI CGGCCG 1 cut(s) 234
EclXI CGGCCG 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 220, 619
Eco47I GGWCC 2 cut(s) 177, 337
Eco52I CGGCCG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 539
EcoT14I CCWWGG 2 cut(s) 220, 619
ErhI CCWWGG 2 cut(s) 220, 619
FaeI CATG 5 cut(s) 256, 452, 460, 585, 623
FaiI YATR 7 cut(s) 254, 299, 423, 450, 458, 583, 621
FaqI GGGAC 2 cut(s) 190, 335
FatI CATG 5 cut(s) 252, 448, 456, 581, 619
FauI CCCGC 1 cut(s) 214
FbaI TGATCA 1 cut(s) 493
Fnu4HI GCNGC 5 cut(s) 6, 280, 477, 545, 586
Fsp4HI GCNGC 5 cut(s) 6, 280, 477, 545, 586
FspBI CTAG 1 cut(s) 649
GlaI GCGC 2 cut(s) 302, 402
GluI GCNGC 5 cut(s) 6, 280, 477, 545, 586
GsuI CTGGAG 1 cut(s) 595
HaeIII GGCC 4 cut(s) 122, 149, 236, 539
HapII CCGG 3 cut(s) 110, 233, 404
HgaI GACGC 1 cut(s) 624
HhaI GCGC 2 cut(s) 303, 403
Hin1I GRCGYC 1 cut(s) 616
Hin1II CATG 5 cut(s) 256, 452, 460, 585, 623
Hin6I GCGC 2 cut(s) 301, 401
HinP1I GCGC 2 cut(s) 301, 401
HinfI GANTC 1 cut(s) 373
HpaII CCGG 3 cut(s) 110, 233, 404
HphI GGTGA 1 cut(s) 298
Hpy188I TCNGA 4 cut(s) 341, 437, 532, 569
Hpy188III TCNNGA 3 cut(s) 377, 612, 642
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 59, 145, 463
HpyCH4III ACNGT 3 cut(s) 181, 259, 383
HpyCH4V TGCA 3 cut(s) 47, 279, 585
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 288, 482
Hsp92I GRCGYC 1 cut(s) 616
Hsp92II CATG 5 cut(s) 256, 452, 460, 585, 623
HspAI GCGC 2 cut(s) 301, 401
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 2 cut(s) 68, 493
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 9 cut(s) 33, 123, 246, 301, 417, 526, 553, 576, 625
Lsp1109I GCAGC 4 cut(s) 291, 463, 556, 597
MaeI CTAG 1 cut(s) 649
MalI GATC 2 cut(s) 70, 495
MboI GATC 2 cut(s) 68, 493
MboII GAAGA 1 cut(s) 155
MfeI CAATTG 1 cut(s) 508
MhlI GDGCHC 2 cut(s) 233, 264
MluCI AATT 2 cut(s) 508, 624
MmeI TCCRAC 1 cut(s) 547
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 3 cut(s) 110, 233, 404
MspR9I CCNGG 3 cut(s) 110, 233, 541
MunI CAATTG 1 cut(s) 508
MvaI CCWGG 1 cut(s) 541
MwoI GCNNNNNNNGC 3 cut(s) 119, 288, 482
NciI CCSGG 2 cut(s) 110, 233
NcoI CCATGG 1 cut(s) 619
NdeII GATC 2 cut(s) 68, 493
NlaIII CATG 5 cut(s) 256, 452, 460, 585, 623
NlaIV GGNNCC 2 cut(s) 178, 385
NspI RCATGY 1 cut(s) 585
PaeI GCATGC 1 cut(s) 585
PfeI GAWTC 1 cut(s) 373
PkrI GCNGC 5 cut(s) 7, 281, 478, 546, 587
Psp6I CCWGG 1 cut(s) 539
PspGI CCWGG 1 cut(s) 539
PspN4I GGNNCC 2 cut(s) 178, 385
PspPI GGNCC 3 cut(s) 148, 177, 337
PstI CTGCAG 1 cut(s) 281
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
RseI CAYNNNNRTG 1 cut(s) 257
SatI GCNGC 5 cut(s) 6, 280, 477, 545, 586
Sau3AI GATC 2 cut(s) 68, 493
Sau96I GGNCC 3 cut(s) 148, 177, 337
ScrFI CCNGG 3 cut(s) 110, 233, 541
SduI GDGCHC 2 cut(s) 233, 264
SetI ASST 7 cut(s) 137, 290, 317, 339, 549, 590, 650
SfcI CTRYAG 1 cut(s) 277
SinI GGWCC 2 cut(s) 177, 337
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
SphI GCATGC 1 cut(s) 585
Sse9I AATT 2 cut(s) 508, 624
SsiI CCGC 3 cut(s) 8, 207, 479
SspMI CTAG 1 cut(s) 649
StyD4I CCNGG 3 cut(s) 108, 231, 539
StyI CCWWGG 2 cut(s) 220, 619
TaaI ACNGT 3 cut(s) 181, 259, 383
TaqI TCGA 3 cut(s) 12, 378, 643
TasI AATT 2 cut(s) 508, 624
TfiI GAWTC 1 cut(s) 373
TseI GCWGC 5 cut(s) 5, 279, 476, 544, 585
TspDTI ATGAA 1 cut(s) 445
TspGWI ACGGA 1 cut(s) 451
VpaK11BI GGWCC 2 cut(s) 177, 337
XceI RCATGY 1 cut(s) 585
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XspI CTAG 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.