RLG00000018985

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013979
Physical Location & Seq
Forward (+)
44048339 .. 44049013
675 bp
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UTR
Exon/CDS
Intron
RLM00000018985

Sequence Viewer

Length: 675 bp
ATGGCTACACTCCAAGAAACACAACATCCACTTTTGGAGACTTATAATAGCAGTAATAATTCACCACCGGCAACAGCATCTCCGTCATCACCATTACTGTCATCATCAATAGTAGCTTCAAAACCATCAAAAACACCAGCACAAAAGGCAATGAGAAAGACATTCAAAGGCACCGCCCATTTGGCCAATCTTCTCCCAACTGGAACAGTTCTCACATTTCAAATGTTCTCTCCAGCTTTTACACACCAAGGCAAGTGCCCCACCGTTGCCAACCATACAATGACATTATCCCTTCTAATCTTTTGCTCAATCTCCTCTTTTCTTTTGTGCTTCACCGATAGCTTTCGCGACGAGCGGGGAAAAGTTCGATATGGGTTGGCCACTTTCAAAGGATTGTTTGTGCTTGACGGCTCTCACACGATTAGGGCAGAGGAGGCAGCAAAATACAAGCTGACATTCATTGATTTCTTCCATGCTTTTATGTCTGTGTTGGTGTTTGGGGCGGTGGCATCGTTTGATCAGAATATTGTCAACTGCTTTTATCCTAAGCCGTCAGAGGAGGGGAAACAACTTTTGTTTGCGGTGCCGGTTGGAGTTGGTGTTGTTTGCAGTATCTTATTTGTTTTGTTTCCTACTAGGCGCCATGGAATTGGCTTCCCTCTTTCTCGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

225

Amino Acids

24.45

Weight (kDa)

9.42

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 57 - 219 2.1e-68 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28485 AT4G28485
fragaria_vesca FvH4_6g26701
malus_domestica MD03G1070300.v1.1 MD11G1074100.v1.1
prunus_persica Prupe.4G053000_v2.0.a1
pyrus_communis pycom11g06150
rosa_chinensis RchiOBHm_Chr0c19g0500031
rosa_laevigata RLG00000018985
rosa_multiflora Rmu_sc0008568.1_g000003
rosa_roxburghii Rroxscaffold_2G00115750
rosa_rugosa Rorug02G0277600
rosa_samantha Rh2AG328200 Rh2BG338300 Rh2CG315300 Rh2DG355200
rosa_wichuraiana Rw2G026620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 45
AccB1I GGYRCC 3 cut(s) 170, 583, 639
AccBSI CCGCTC 1 cut(s) 355
AccII CGCG 1 cut(s) 348
AciI CCGC 4 cut(s) 174, 355, 503, 581
AcoI YGGCCR 2 cut(s) 183, 378
AcyI GRCGYC 1 cut(s) 640
AgsI TTSAA 4 cut(s) 120, 166, 221, 388
AluBI AGCT 4 cut(s) 116, 236, 342, 451
AluI AGCT 4 cut(s) 116, 236, 342, 451
Alw26I GTCTC 1 cut(s) 32
AoxI GGCC 2 cut(s) 183, 378
ApeKI GCWGC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 642
AsuHPI GGTGA 3 cut(s) 54, 81, 325
BaeGI GKGCMC 1 cut(s) 260
BalI TGGCCA 2 cut(s) 185, 380
BanI GGYRCC 3 cut(s) 170, 583, 639
BbvI GCAGC 1 cut(s) 449
BccI CCATC 1 cut(s) 133
BceAI ACGGC 2 cut(s) 424, 535
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 636
BfoI RGCGCY 1 cut(s) 643
BglI GCCNNNNNGGC 1 cut(s) 182
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
BmiI GGNNCC 3 cut(s) 172, 585, 641
BmsI GCATC 2 cut(s) 86, 518
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 546
BsaHI GRCGYC 1 cut(s) 640
BsaJI CCNNGG 2 cut(s) 247, 643
BsaXI ACNNNNNCTCC 4 cut(s) 64, 94, 585, 615
Bse118I RCCGGY 2 cut(s) 67, 586
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 247, 643
BseGI GGATG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 3 cut(s) 304, 446, 572
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 1 cut(s) 449
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 2 cut(s) 185, 380
BshNI GGYRCC 3 cut(s) 170, 583, 639
BsiSI CCGG 2 cut(s) 68, 587
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 185, 380
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 1 cut(s) 517
Bsp19I CCATGG 1 cut(s) 643
Bsp68I TCGCGA 1 cut(s) 348
BspACI CCGC 4 cut(s) 174, 355, 503, 581
BspANI GGCC 2 cut(s) 185, 380
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 172, 585, 641
BspT107I GGYRCC 3 cut(s) 170, 583, 639
BsrBI CCGCTC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 2 cut(s) 67, 586
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 2 cut(s) 67, 586
BssECI CCNNGG 2 cut(s) 247, 643
BssMI GATC 1 cut(s) 517
BssNI GRCGYC 1 cut(s) 640
BssT1I CCWWGG 2 cut(s) 247, 643
Bst4CI ACNGT 3 cut(s) 99, 208, 265
BstACI GRCGYC 1 cut(s) 640
BstDEI CTNAG 1 cut(s) 546
BstDSI CCRYGG 1 cut(s) 643
BstF5I GGATG 1 cut(s) 25
BstFNI CGCG 1 cut(s) 348
BstH2I RGCGCY 1 cut(s) 643
BstHHI GCGC 1 cut(s) 642
BstKTI GATC 1 cut(s) 520
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 517
BstMWI GCNNNNNNNGC 3 cut(s) 146, 182, 434
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 449
BstXI CCANNNNNNTGG 1 cut(s) 650
BsuRI GGCC 2 cut(s) 185, 380
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 1 cut(s) 25
BtuMI TCGCGA 1 cut(s) 348
CfoI GCGC 1 cut(s) 642
Cfr10I RCCGGY 2 cut(s) 67, 586
CviAII CATG 2 cut(s) 473, 644
DdeI CTNAG 1 cut(s) 546
DinI GGCGCC 1 cut(s) 641
DpnI GATC 1 cut(s) 519
DpnII GATC 1 cut(s) 517
EaeI YGGCCR 2 cut(s) 183, 378
Eco130I CCWWGG 2 cut(s) 247, 643
EcoT14I CCWWGG 2 cut(s) 247, 643
EgeI GGCGCC 1 cut(s) 641
EheI GGCGCC 1 cut(s) 641
ErhI CCWWGG 2 cut(s) 247, 643
FaeI CATG 2 cut(s) 476, 647
FaiI YATR 6 cut(s) 45, 276, 372, 474, 482, 645
FatI CATG 2 cut(s) 472, 643
FauI CCCGC 1 cut(s) 348
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 438
FspBI CTAG 1 cut(s) 636
GlaI GCGC 1 cut(s) 641
GluI GCNGC 1 cut(s) 438
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 643
HaeIII GGCC 2 cut(s) 185, 380
HapII CCGG 2 cut(s) 68, 587
HhaI GCGC 1 cut(s) 642
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 2 cut(s) 476, 647
Hin6I GCGC 1 cut(s) 640
HinP1I GCGC 1 cut(s) 640
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HpaII CCGG 2 cut(s) 68, 587
HphI GGTGA 3 cut(s) 54, 81, 325
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 2 cut(s) 522, 556
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 1 cut(s) 532
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 3 cut(s) 99, 208, 265
HpyCH4V TGCA 1 cut(s) 609
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 182, 434
HpyF3I CTNAG 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 2 cut(s) 476, 647
HspAI GCGC 1 cut(s) 640
KasI GGCGCC 1 cut(s) 639
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 1 cut(s) 517
LpnPI CCDG 5 cut(s) 81, 150, 186, 246, 600
Lsp1109I GCAGC 1 cut(s) 449
LweI GCATC 2 cut(s) 86, 518
MaeI CTAG 1 cut(s) 636
MalI GATC 1 cut(s) 519
MbiI CCGCTC 1 cut(s) 355
MboI GATC 1 cut(s) 517
MboII GAAGA 2 cut(s) 182, 460
MhlI GDGCHC 1 cut(s) 260
MlsI TGGCCA 2 cut(s) 185, 380
MluCI AATT 2 cut(s) 58, 648
MluNI TGGCCA 2 cut(s) 185, 380
Mly113I GGCGCC 1 cut(s) 640
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 6 cut(s) 325, 424, 427, 550, 553, 669
Mox20I TGGCCA 2 cut(s) 185, 380
MscI TGGCCA 2 cut(s) 185, 380
Msp20I TGGCCA 2 cut(s) 185, 380
MspI CCGG 2 cut(s) 68, 587
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 3 cut(s) 146, 182, 434
NarI GGCGCC 1 cut(s) 640
NcoI CCATGG 1 cut(s) 643
NdeII GATC 1 cut(s) 517
NlaIII CATG 2 cut(s) 476, 647
NlaIV GGNNCC 3 cut(s) 172, 585, 641
NruI TCGCGA 1 cut(s) 348
PkrI GCNGC 1 cut(s) 439
PluTI GGCGCC 1 cut(s) 643
PsiI TTATAA 1 cut(s) 45
PspN4I GGNNCC 3 cut(s) 172, 585, 641
RruI TCGCGA 1 cut(s) 348
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 1 cut(s) 517
SduI GDGCHC 1 cut(s) 260
SetI ASST 4 cut(s) 118, 238, 344, 453
SfaNI GCATC 2 cut(s) 86, 518
SfoI GGCGCC 1 cut(s) 641
Sse9I AATT 2 cut(s) 58, 648
SsiI CCGC 4 cut(s) 174, 355, 503, 581
SspDI GGCGCC 1 cut(s) 639
SspI AATATT 1 cut(s) 526
SspMI CTAG 1 cut(s) 636
StyI CCWWGG 2 cut(s) 247, 643
TaaI ACNGT 3 cut(s) 99, 208, 265
TaqI TCGA 1 cut(s) 367
TasI AATT 2 cut(s) 58, 648
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 448
TspGWI ACGGA 1 cut(s) 72
XspI CTAG 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.