AT4G29140

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14368877 .. 14371195
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29140.1

Sequence Viewer

Length: 1599 bp
ATGTGTAACCCATCAACAACAACAACAACCACCGGTTCAGAGAACCAAGAATCTCGAACCGGACTCTTCCTCGATCTCTTCTCGATCAATAGCTTTGAACCCACAAAGAGAAATCTCCGGCATTGTGAGAACAGAGGATCTCCTCTTATGGCAGAAGCTGTAACAGAGGCGAAATCTCTCTTCACGTTAGCTTTTCCGATCGCCGTGACGGCTCTTGTCCTCTACCTACGCTCAGCCGTATCAATGTTTTTCTTGGGTCAACTTGGTGACCTCGAATTAGCCGCCGGTTCACTCGCCATTGCCTTTGCTAACATAACCGGTTACTCTGTTTTATCCGGTTTAGCTCTTGGTATGGAACCACTCTGTTCTCAAGCCTTCGGTGCTCACCGCTTCAAACTCCTTTCCCTAACCCTCCATCGAACCGTGGTTTTTCTCTTGGTTTGTTGCGTACCGATCTCGGTTCTCTGGTTTAACGTCGGCAAAATATCGGTTTACCTTCACCAAGACCCCGACATCGCGAAATTAGCTCAGACATATCTCATCTTCTCCCTACCTGATCTTCTCACCAACACTCTTCTTCATCCAATCAGAATCTACCTTCGTGCTCAAGGCATCATTCACCCCGTAACCCTAGCTTCTCTCTCCGGCGCTGTTTTTCACCTCCCGGCTAATCTTTTCTTAGTCTCTTACCTCCGTCTTGGTTTAACCGGCGTAGCAGTCGCTTCCTCCATCACAAACATCTTCGTCGTTGCTTTCCTCGTTTGCTACGTCTGGGCGAGTGGTCTTCACGCGCCTACATGGACTGACCCGACCCGTGATTGTTTCCGCGGGTGGGCTCCGTTGCTGCGTCTCGCGGGACCAAGCTGTGTCTCCGTGTGTTTGGAATGGTGGTGGTACGAGATCATGATCGTTTTGTGTGGTTTGCTCGTGAATCCAAGATCGACGGTGGCTGCTATGGGCGTTTTGATCCAGACGACGTCGTTTCTTTATGTTTTCCCGTCTTCTCTTAGCTTTGCTGTCTCAACTAGAGTCGGAAACGAACTTGGAGCCAACCGTCCCAAGACAGCAAAGCTAACGGCTACGGTGGCTATCGTTTTCGCGGCGGTTACAGGGATTATAGCGGCGGCGTTTGCTTACTCAGTCAGAAACGCTTGGGGAAGGATTTTCACCGGAGACAAAGAGATACTCCAGCTAACAGCGGCGGCGTTACCGATATTAGGTCTATGCGAGATCGGAAACTGTCCTCAGACGGTGGGATGCGGCGTCGTGAGAGGAACAGCACGACCGTCAACGGCGGCGAACGTGAACCTTGGAGCGTTTTATCTGGTGGGCATGCCGGTGGCAGTGGGTCTCGGGTTTTGGGCCGGAATTGGGTTTAATGGGCTTTGGGTAGGACTACTTGCGGCGCAGATTAGCTGCGCAGGTCTTATGATGTACGTGGTGGGGACCACAGATTGGGAATCGGAGGCTAAGAAGGCGCAGACGCTAACGTGCGCTGAGACTGTAGAGAATGATATTATTAAGGCGGTGGTGGCGAGTACTATAGACGGTGAGTGCGATGAGGCTGAGCCGTTGATTCGCATCACGGTGCTTTATTAA

Protein Analysis

532

Amino Acids

57.05

Weight (kDa)

7.03

Isoelectric Point (pI)

26.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 66 - 224 2.8e-34 MatE
MatE PF01554 287 - 448 9.8e-36 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011869)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 980
Acc16I TGCGCA 1 cut(s) 1420
Acc36I ACCTGC 1 cut(s) 1412
AccB7I CCANNNNNTGG 1 cut(s) 1455
AccII CGCG 5 cut(s) 518, 791, 828, 854, 1100
AclWI GGATC 2 cut(s) 145, 961
AcyI GRCGYC 2 cut(s) 977, 1263
AfaI GTAC 4 cut(s) 450, 896, 1436, 1540
AfiI CCNNNNNNNGG 4 cut(s) 832, 1217, 1371, 1455
AgeI ACCGGT 2 cut(s) 32, 317
AgsI TTSAA 2 cut(s) 98, 394
Alw21I GWGCWC 2 cut(s) 385, 607
Alw26I GTCTC 7 cut(s) 688, 854, 874, 1024, 1167, 1355, 1493
AlwI GGATC 2 cut(s) 145, 961
AlwNI CAGNNNCTG 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 1352
AoxI GGCC 1 cut(s) 1362
ApeKI GCWGC 3 cut(s) 844, 950, 1416
AsiGI ACCGGT 2 cut(s) 32, 317
AspLEI GCGC 6 cut(s) 650, 793, 1408, 1421, 1480, 1496
AspS9I GGNCC 3 cut(s) 857, 1362, 1446
AsuC2I CCSGG 1 cut(s) 665
AsuHPI GGTGA 8 cut(s) 278, 377, 491, 556, 611, 650, 1159, 1562
AvaI CYCGRG 1 cut(s) 1352
AvaII GGWCC 2 cut(s) 857, 1446
BanII GRGCYC 1 cut(s) 838
BauI CACGAG 1 cut(s) 926
BbsI GAAGAC 2 cut(s) 776, 993
Bbv12I GWGCWC 2 cut(s) 385, 607
BbvI GCAGC 3 cut(s) 831, 937, 1403
BccI CCATC 3 cut(s) 19, 423, 737
BceAI ACGGC 6 cut(s) 188, 221, 225, 1092, 1308, 1555
BcnI CCSGG 1 cut(s) 665
BcoDI GTCTC 7 cut(s) 688, 854, 874, 1024, 1167, 1355, 1493
BfaI CTAG 2 cut(s) 632, 1026
BfmI CTRYAG 2 cut(s) 1503, 1542
BfoI RGCGCY 1 cut(s) 651
BfuAI ACCTGC 1 cut(s) 1412
BglI GCCNNNNNGGC 1 cut(s) 209
BlpI GCTNAGC 2 cut(s) 232, 1566
BmcAI AGTACT 1 cut(s) 1540
Bme1390I CCNGG 1 cut(s) 665
Bme18I GGWCC 2 cut(s) 857, 1446
BmeT110I CYCGRG 1 cut(s) 1352
BmgT120I GGNCC 3 cut(s) 857, 1362, 1446
BmiI GGNNCC 5 cut(s) 357, 837, 858, 1048, 1447
BmrFI CCNGG 1 cut(s) 665
BmsI GCATC 3 cut(s) 621, 1247, 1590
BpiI GAAGAC 2 cut(s) 776, 993
BpmI CTGGAG 1 cut(s) 1172
Bpu1102I GCTNAGC 2 cut(s) 232, 1566
BpuEI CTTGAG 2 cut(s) 354, 591
BpuMI CCSGG 1 cut(s) 665
BsaAI YACGTR 1 cut(s) 1438
BsaBI GATNNNNATC 2 cut(s) 905, 1580
BsaHI GRCGYC 2 cut(s) 977, 1263
BsaI GGTCTC 1 cut(s) 1355
BsaJI CCNNGG 3 cut(s) 423, 826, 1309
BsaWI WCCGGW 5 cut(s) 32, 59, 317, 335, 1169
Bsc4I CCNNNNNNNGG 4 cut(s) 832, 1217, 1371, 1455
Bse118I RCCGGY 5 cut(s) 32, 284, 317, 707, 1336
Bse3DI GCAATG 1 cut(s) 297
Bse8I GATNNNNATC 2 cut(s) 905, 1580
BseDI CCNNGG 3 cut(s) 423, 826, 1309
BseGI GGATG 2 cut(s) 580, 1262
BseJI GATNNNNATC 2 cut(s) 905, 1580
BseLI CCNNNNNNNGG 4 cut(s) 832, 1217, 1371, 1455
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 6 cut(s) 246, 542, 1152, 1259, 1488, 1557
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 3 cut(s) 831, 937, 1403
Bsh1236I CGCG 5 cut(s) 518, 791, 828, 854, 1100
Bsh1285I CGRYCG 2 cut(s) 201, 1286
BshFI GGCC 1 cut(s) 1364
BshTI ACCGGT 2 cut(s) 32, 317
BsiEI CGRYCG 2 cut(s) 201, 1286
BsiHKAI GWGCWC 2 cut(s) 385, 607
BsiHKCI CYCGRG 1 cut(s) 1352
BslFI GGGAC 3 cut(s) 870, 1041, 1459
BslI CCNNNNNNNGG 4 cut(s) 832, 1217, 1371, 1455
BsmAI GTCTC 7 cut(s) 688, 854, 874, 1024, 1167, 1355, 1493
BsmBI CGTCTC 1 cut(s) 854
BsmFI GGGAC 3 cut(s) 870, 1041, 1459
BsnI GGCC 1 cut(s) 1364
Bso31I GGTCTC 1 cut(s) 1355
BsoBI CYCGRG 1 cut(s) 1352
Bsp1286I GDGCHC 3 cut(s) 385, 607, 838
Bsp1720I GCTNAGC 2 cut(s) 232, 1566
Bsp68I TCGCGA 1 cut(s) 518
BspANI GGCC 1 cut(s) 1364
BspCNI CTCAG 6 cut(s) 245, 541, 1151, 1258, 1489, 1558
BspFNI CGCG 5 cut(s) 518, 791, 828, 854, 1100
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 5 cut(s) 357, 837, 858, 1048, 1447
BspMI ACCTGC 1 cut(s) 1412
BspPI GGATC 2 cut(s) 145, 961
BspTNI GGTCTC 1 cut(s) 1355
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 5 cut(s) 32, 284, 317, 707, 1336
BssAI RCCGGY 5 cut(s) 32, 284, 317, 707, 1336
BssECI CCNNGG 3 cut(s) 423, 826, 1309
BssNI GRCGYC 2 cut(s) 977, 1263
BssSI CACGAG 1 cut(s) 926
BssT1I CCWWGG 1 cut(s) 1309
Bst2BI CACGAG 1 cut(s) 926
Bst6I CTCTTC 4 cut(s) 71, 83, 185, 579
BstACI GRCGYC 2 cut(s) 977, 1263
BstBAI YACGTR 1 cut(s) 1438
BstC8I GCNNGC 1 cut(s) 1334
BstDEI CTNAG 9 cut(s) 232, 528, 679, 1007, 1138, 1245, 1470, 1497, 1566
BstDSI CCRYGG 2 cut(s) 423, 826
BstEII GGTNACC 1 cut(s) 266
BstF5I GGATG 2 cut(s) 580, 1262
BstFNI CGCG 5 cut(s) 518, 791, 828, 854, 1100
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 6 cut(s) 650, 793, 1408, 1421, 1480, 1496
BstMAI GTCTC 7 cut(s) 688, 854, 874, 1024, 1167, 1355, 1493
BstMCI CGRYCG 2 cut(s) 201, 1286
BstMWI GCNNNNNNNGC 7 cut(s) 209, 380, 524, 1085, 1130, 1475, 1532
BstNSI RCATGY 1 cut(s) 1336
BstPI GGTNACC 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 663
BstSFI CTRYAG 2 cut(s) 1503, 1542
BstUI CGCG 5 cut(s) 518, 791, 828, 854, 1100
BstV1I GCAGC 3 cut(s) 831, 937, 1403
BstV2I GAAGAC 2 cut(s) 776, 993
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BsuRI GGCC 1 cut(s) 1364
BtgI CCRYGG 2 cut(s) 423, 826
BtgZI GCGATG 2 cut(s) 499, 1572
BtsCI GGATG 2 cut(s) 580, 1262
BtsI GCAGTG 1 cut(s) 1350
BtsIMutI CAGTG 1 cut(s) 1350
BtuMI TCGCGA 1 cut(s) 518
BveI ACCTGC 1 cut(s) 1412
Cac8I GCNNGC 1 cut(s) 1334
CaiI CAGNNNCTG 1 cut(s) 158
CciI TCATGA 1 cut(s) 903
CfoI GCGC 6 cut(s) 650, 793, 1408, 1421, 1480, 1496
Cfr10I RCCGGY 5 cut(s) 32, 284, 317, 707, 1336
Cfr13I GGNCC 3 cut(s) 857, 1362, 1446
Cfr42I CCGCGG 1 cut(s) 829
CseI GACGC 3 cut(s) 836, 1252, 1492
Csp6I GTAC 4 cut(s) 449, 895, 1435, 1539
CspAI ACCGGT 2 cut(s) 32, 317
CviAII CATG 3 cut(s) 798, 904, 1333
CviQI GTAC 4 cut(s) 449, 895, 1435, 1539
DdeI CTNAG 9 cut(s) 232, 528, 679, 1007, 1138, 1245, 1470, 1497, 1566
Eam1104I CTCTTC 4 cut(s) 71, 83, 185, 579
EarI CTCTTC 4 cut(s) 71, 83, 185, 579
Eco130I CCWWGG 1 cut(s) 1309
Eco24I GRGCYC 1 cut(s) 838
Eco31I GGTCTC 1 cut(s) 1355
Eco47I GGWCC 2 cut(s) 857, 1446
Eco88I CYCGRG 1 cut(s) 1352
Eco91I GGTNACC 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 1309
EcoT38I GRGCYC 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 1309
Esp3I CGTCTC 1 cut(s) 854
FaeI CATG 3 cut(s) 801, 907, 1336
FaqI GGGAC 3 cut(s) 870, 1041, 1459
FatI CATG 3 cut(s) 797, 903, 1332
FauI CCCGC 2 cut(s) 821, 847
FokI GGATG 2 cut(s) 567, 1269
FriOI GRGCYC 1 cut(s) 838
FspBI CTAG 2 cut(s) 632, 1026
FspI TGCGCA 1 cut(s) 1420
GlaI GCGC 6 cut(s) 649, 792, 1407, 1420, 1479, 1495
GsuI CTGGAG 1 cut(s) 1172
HaeII RGCGCY 1 cut(s) 651
HaeIII GGCC 1 cut(s) 1364
HgaI GACGC 3 cut(s) 836, 1252, 1492
HhaI GCGC 6 cut(s) 650, 793, 1408, 1421, 1480, 1496
Hin1I GRCGYC 2 cut(s) 977, 1263
Hin1II CATG 3 cut(s) 801, 907, 1336
Hin6I GCGC 6 cut(s) 648, 791, 1406, 1419, 1478, 1494
HinP1I GCGC 6 cut(s) 648, 791, 1406, 1419, 1478, 1494
HincII GTYRAC 2 cut(s) 260, 1290
HindII GTYRAC 2 cut(s) 260, 1290
HinfI GANTC 7 cut(s) 50, 63, 591, 931, 1029, 1460, 1576
HphI GGTGA 8 cut(s) 278, 377, 491, 556, 611, 650, 1159, 1562
Hpy166II GTNNAC 5 cut(s) 260, 290, 493, 1290, 1306
Hpy188I TCNGA 9 cut(s) 40, 198, 531, 590, 1034, 1145, 1235, 1248, 1465
Hpy188III TCNNGA 7 cut(s) 54, 82, 517, 904, 928, 970, 1267
Hpy8I GTNNAC 5 cut(s) 260, 290, 493, 1290, 1306
Hpy99I CGWCG 6 cut(s) 479, 749, 946, 979, 982, 1268
HpyAV CCTTC 5 cut(s) 385, 506, 608, 1152, 1468
HpyCH4IV ACGT 7 cut(s) 185, 474, 768, 977, 1302, 1437, 1490
HpyF10VI GCNNNNNNNGC 7 cut(s) 209, 380, 524, 1085, 1130, 1475, 1532
HpyF3I CTNAG 9 cut(s) 232, 528, 679, 1007, 1138, 1245, 1470, 1497, 1566
HpySE526I ACGT 7 cut(s) 185, 474, 768, 977, 1302, 1437, 1490
Hsp92I GRCGYC 2 cut(s) 977, 1263
Hsp92II CATG 3 cut(s) 801, 907, 1336
HspAI GCGC 6 cut(s) 648, 791, 1406, 1419, 1478, 1494
KspI CCGCGG 1 cut(s) 829
LmnI GCTCC 3 cut(s) 841, 1046, 1313
Lsp1109I GCAGC 3 cut(s) 831, 937, 1403
LweI GCATC 3 cut(s) 621, 1247, 1590
MaeI CTAG 2 cut(s) 632, 1026
MaeII ACGT 7 cut(s) 185, 474, 768, 977, 1302, 1437, 1490
MaeIII GTNAC 8 cut(s) 5, 160, 205, 266, 320, 625, 1105, 1206
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 3 cut(s) 385, 607, 838
MluCI AATT 3 cut(s) 275, 521, 1368
MlyI GAGTC 2 cut(s) 57, 1038
MmeI TCCRAC 1 cut(s) 1012
MseI TTAA 5 cut(s) 471, 704, 1377, 1521, 1597
MslI CAYNNNNRTG 2 cut(s) 1337, 1586
MspA1I CMGCKG 2 cut(s) 828, 1199
MspR9I CCNGG 1 cut(s) 665
MvnI CGCG 5 cut(s) 518, 791, 828, 854, 1100
MwoI GCNNNNNNNGC 7 cut(s) 209, 380, 524, 1085, 1130, 1475, 1532
NciI CCSGG 1 cut(s) 665
NlaIII CATG 3 cut(s) 801, 907, 1336
NlaIV GGNNCC 5 cut(s) 357, 837, 858, 1048, 1447
NmuCI GTSAC 2 cut(s) 205, 266
NruI TCGCGA 1 cut(s) 518
NsbI TGCGCA 1 cut(s) 1420
NspI RCATGY 1 cut(s) 1336
PaeI GCATGC 1 cut(s) 1336
PagI TCATGA 1 cut(s) 903
PcsI WCGNNNNNNNCGW 2 cut(s) 765, 1554
PfeI GAWTC 5 cut(s) 50, 591, 931, 1460, 1576
PflFI GACNNNGTC 1 cut(s) 976
PflMI CCANNNNNTGG 1 cut(s) 1455
PinAI ACCGGT 2 cut(s) 32, 317
Ple19I CGATCG 1 cut(s) 201
PleI GAGTC 2 cut(s) 57, 1037
PpsI GAGTC 2 cut(s) 57, 1037
Ppu21I YACGTR 1 cut(s) 1438
PspEI GGTNACC 1 cut(s) 266
PspN4I GGNNCC 5 cut(s) 357, 837, 858, 1048, 1447
PspPI GGNCC 3 cut(s) 857, 1362, 1446
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 137
PsyI GACNNNGTC 1 cut(s) 976
PvuI CGATCG 1 cut(s) 201
RruI TCGCGA 1 cut(s) 518
RsaI GTAC 4 cut(s) 450, 896, 1436, 1540
RsaNI GTAC 4 cut(s) 449, 895, 1435, 1539
RseI CAYNNNNRTG 2 cut(s) 1337, 1586
SacII CCGCGG 1 cut(s) 829
SaqAI TTAA 5 cut(s) 471, 704, 1377, 1521, 1597
Sau96I GGNCC 3 cut(s) 857, 1362, 1446
ScaI AGTACT 1 cut(s) 1540
SchI GAGTC 2 cut(s) 57, 1038
ScrFI CCNGG 1 cut(s) 665
SduI GDGCHC 3 cut(s) 385, 607, 838
SfaNI GCATC 3 cut(s) 621, 1247, 1590
SfcI CTRYAG 2 cut(s) 1503, 1542
Sfr303I CCGCGG 1 cut(s) 829
SgrBI CCGCGG 1 cut(s) 829
SinI GGWCC 2 cut(s) 857, 1446
SmiMI CAYNNNNRTG 2 cut(s) 1337, 1586
SmlI CTYRAG 2 cut(s) 369, 606
SmoI CTYRAG 2 cut(s) 369, 606
SphI GCATGC 1 cut(s) 1336
Sse9I AATT 3 cut(s) 275, 521, 1368
SspMI CTAG 2 cut(s) 632, 1026
StyD4I CCNGG 1 cut(s) 663
StyI CCWWGG 1 cut(s) 1309
TaiI ACGT 7 cut(s) 188, 477, 771, 980, 1305, 1440, 1493
TaqI TCGA 6 cut(s) 55, 72, 83, 273, 418, 941
TasI AATT 3 cut(s) 275, 521, 1368
TatI WGTACW 1 cut(s) 1538
TauI GCSGC 9 cut(s) 284, 1103, 1124, 1127, 1202, 1205, 1263, 1298, 1406
TfiI GAWTC 5 cut(s) 50, 591, 931, 1460, 1576
Tru1I TTAA 5 cut(s) 471, 704, 1377, 1521, 1597
Tru9I TTAA 5 cut(s) 471, 704, 1377, 1521, 1597
TscAI CASTG 1 cut(s) 1350
TseFI GTSAC 2 cut(s) 205, 266
TseI GCWGC 3 cut(s) 844, 950, 1416
Tsp45I GTSAC 2 cut(s) 205, 266
TspDTI ATGAA 1 cut(s) 569
TspGWI ACGGA 3 cut(s) 683, 828, 862
TspRI CASTG 1 cut(s) 1350
Tth111I GACNNNGTC 1 cut(s) 976
Van91I CCANNNNNTGG 1 cut(s) 1455
VpaK11BI GGWCC 2 cut(s) 857, 1446
XceI RCATGY 1 cut(s) 1336
XspI CTAG 2 cut(s) 632, 1026
ZraI GACGTC 1 cut(s) 978
ZrmI AGTACT 1 cut(s) 1540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.