Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011869

Physical Location & Seq

Genomic Coordinates Forward (+)

1465643 .. 1466101

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGAGGAGGTGAAAGAAACGAGCCGCAGCTACCGCAACTCGCCGTCACAGACGTAGTTAAAGAGACCACATCACTCTTCAACCTCGCCTTCCCCATGGTCATCACAGACCTCATCCGCTACTCCCGCTCCATTATCTCCATGCTCTTCCTCGGCCGCCTCGGCGACTCAGAGCTTGCCGCTGGGCCACTAGCCATAGCATACGCAAACATCACCGGCTACTCCGTACTCTCCGGCCTAGCTTTAGGTATGGAGCCGCTTTGTTCCCAAGCCTTCGGAGCTGGACGTCCAAAGCTTCTGTCAGTCACGCTCCACCGCTGTGTACTCTTCCTCCTACTTTGCTCCCTGCTCCCCATTTCGTCGCTTTGGTTTAACATATCGAACATTCTTACGTATGTTGTCCGAGTCCCGAAAATTACCTCAATGGCTCACCACCTATCTCATGTTCTCACTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006855 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0010008 GO:0010015 GO:0010150 GO:0010252 GO:0012505 GO:0015238 GO:0015893 GO:0016020 GO:0022622 GO:0022857 GO:0031090 GO:0031347 GO:0031348 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0040008 GO:0042221 GO:0042493 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046620 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048583 GO:0048585 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0080134 GO:0090693 GO:0097708 GO:0098588 GO:0098771 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

153

Amino Acids

16.43

Weight (kDa)

8.56

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	32 - 150	5.5e-23	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29140
fragaria_vesca	FvH4_1g06290 FvH4_3g02790 FvH4_3g02831
malus_domestica	MD02G1066700.v1.1 MD15G1197200.v1.1
prunus_persica	Prupe.7G218600_v2.0.a1
pyrus_communis	pycom02g05280 pycom15g17620
rosa_chinensis	RchiOBHm_Chr2g0091991
rosa_laevigata	RLG00000016268
rosa_multiflora	Rmu_co8445145.1_g000001 Rmu_sc0000524.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149550
rosa_rugosa	Rorug02G0022200
rosa_samantha	Rh2AG067900 Rh2BG067200 Rh2CG068500
rosa_wichuraiana	Rw2G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	289
AccBSI	CCGCTC	1 cut(s)	129
AciI	CCGC	8 cut(s)	26, 35, 118, 127, 157, 180, 257, 316
AcoI	YGGCCR	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	286
AfaI	GTAC	2 cut(s)	228, 324
AgsI	TTSAA	1 cut(s)	82
AleI	CACNNNNGTG	1 cut(s)	318
AluBI	AGCT	5 cut(s)	31, 175, 242, 281, 295
AluI	AGCT	5 cut(s)	31, 175, 242, 281, 295
Alw26I	GTCTC	1 cut(s)	59
AoxI	GGCC	3 cut(s)	154, 185, 235
ApeKI	GCWGC	1 cut(s)	28
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	3 cut(s)	23, 205, 422
BbvI	GCAGC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	191, 239
BglI	GCCNNNNNGGC	1 cut(s)	162
BisI	GCNGC	5 cut(s)	26, 29, 157, 180, 257
BlsI	GCNGC	5 cut(s)	27, 30, 158, 181, 258
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	3 cut(s)	96, 151, 160
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 315, 345
Bse118I	RCCGGY	1 cut(s)	215
BseDI	CCNNGG	3 cut(s)	96, 151, 160
BseGI	GGATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	21
BseX3I	CGGCCG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	156, 187, 237
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	216, 234
BslFI	GGGAC	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	3 cut(s)	156, 187, 237
Bso31I	GGTCTC	1 cut(s)	59
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	8 cut(s)	26, 35, 118, 127, 157, 180, 257, 316
BspANI	GGCC	3 cut(s)	156, 187, 237
BspCNI	CTCAG	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	3 cut(s)	96, 151, 160
BssNI	GRCGYC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	96
Bst6I	CTCTTC	3 cut(s)	83, 152, 332
BstACI	GRCGYC	1 cut(s)	286
BstBAI	YACGTR	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	169
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	59
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 126, 162, 278
BstSNI	TACGTA	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	40
BstZI	CGGCCG	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	156, 187, 237
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	227, 323
CviAII	CATG	3 cut(s)	97, 142, 443
CviQI	GTAC	2 cut(s)	227, 323
DdeI	CTNAG	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	154
EagI	CGGCCG	1 cut(s)	154
Eam1104I	CTCTTC	3 cut(s)	83, 152, 332
EarI	CTCTTC	3 cut(s)	83, 152, 332
EclXI	CGGCCG	1 cut(s)	154
Eco105I	TACGTA	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	59
Eco52I	CGGCCG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	3 cut(s)	100, 145, 446
FaiI	YATR	8 cut(s)	98, 143, 197, 202, 251, 377, 396, 444
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	3 cut(s)	96, 141, 442
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	5 cut(s)	26, 29, 157, 180, 257
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	5 cut(s)	26, 29, 157, 180, 257
FspBI	CTAG	2 cut(s)	191, 239
GluI	GCNGC	5 cut(s)	26, 29, 157, 180, 257
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	156, 187, 237
HapII	CCGG	2 cut(s)	216, 234
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	100, 145, 446
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	2 cut(s)	167, 405
HpaII	CCGG	2 cut(s)	216, 234
HphI	GGTGA	3 cut(s)	23, 205, 422
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	3 cut(s)	172, 278, 404
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	1 cut(s)	323
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	100, 283
HpyCH4IV	ACGT	3 cut(s)	54, 286, 392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 126, 162, 278
HpyF3I	CTNAG	1 cut(s)	169
HpySE526I	ACGT	3 cut(s)	54, 286, 392
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	3 cut(s)	100, 145, 446
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	6 cut(s)	134, 253, 278, 315, 347, 354
LpnPI	CCDG	5 cut(s)	168, 229, 247, 267, 359
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	191, 239
MaeII	ACGT	3 cut(s)	54, 286, 392
MaeIII	GTNAC	2 cut(s)	46, 304
MbiI	CCGCTC	1 cut(s)	129
MboII	GAAGA	3 cut(s)	70, 139, 319
MluCI	AATT	1 cut(s)	414
MlyI	GAGTC	2 cut(s)	161, 414
MnlI	CCTC	6 cut(s)	95, 122, 161, 170, 341, 430
MseI	TTAA	2 cut(s)	60, 372
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	182, 318
MspI	CCGG	2 cut(s)	216, 234
MwoI	GCNNNNNNNGC	4 cut(s)	34, 126, 162, 278
NcoI	CCATGG	1 cut(s)	96
NlaIII	CATG	3 cut(s)	100, 145, 446
NlaIV	GGNNCC	1 cut(s)	255
NmeAIII	GCCGAG	2 cut(s)	132, 141
NmuCI	GTSAC	2 cut(s)	46, 304
OliI	CACNNNNGTG	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	152
PkrI	GCNGC	5 cut(s)	27, 30, 158, 181, 258
PleI	GAGTC	2 cut(s)	161, 413
PpsI	GAGTC	2 cut(s)	161, 413
Ppu21I	YACGTR	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	185
RsaI	GTAC	2 cut(s)	228, 324
RsaNI	GTAC	2 cut(s)	227, 323
RseI	CAYNNNNRTG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	60, 372
SatI	GCNGC	5 cut(s)	26, 29, 157, 180, 257
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	2 cut(s)	161, 414
SmiMI	CAYNNNNRTG	1 cut(s)	318
SnaBI	TACGTA	1 cut(s)	393
Sse9I	AATT	1 cut(s)	414
SsiI	CCGC	8 cut(s)	26, 35, 118, 127, 157, 180, 257, 316
SspMI	CTAG	2 cut(s)	191, 239
StyI	CCWWGG	1 cut(s)	96
TaiI	ACGT	3 cut(s)	57, 289, 395
TaqI	TCGA	1 cut(s)	380
TasI	AATT	1 cut(s)	414
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	4 cut(s)	28, 159, 182, 259
Tru1I	TTAA	2 cut(s)	60, 372
Tru9I	TTAA	2 cut(s)	60, 372
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	2 cut(s)	46, 304
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	2 cut(s)	46, 304
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	457
XspI	CTAG	2 cut(s)	191, 239
ZraI	GACGTC	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.