Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011869

Physical Location & Seq

Genomic Coordinates Forward (+)

5097467 .. 5098163

Gene Structure 697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG067200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTGTAATCCAAACCCTTCTGTTAATTCCACCAAGACCCAGAAAGCAGCCGAGCAGGTGCATCAACAGCCACAGCAAGGTCATCTGTTTCTCGACCTCTTCTTCTTGTCAGATGAGCCGCCAAAGCTAGTAGTAAAGCAACTACAACAGGCACCATCGTCGTCCCCAATTTGCATCACAGACGTAGTCAAAGAGACCAAGTCCCTGTTCAAACTGGCCTTCCCCATACTCATCACAGCTCTCATTCTCTACTCCCGCTCAGCCCTGTCCATGCTGTTCCTCGGCCGCCTGGGCGACTTAGAACTCGCCTCGGGGTCACTAGCCATAGCCTTTGCCAACATCACAGGCTACTCCGTGCTCTCCGGCCTAGCCTTGGGTATGGAGCCGCTGTGTTCCCAAGCCTTCGGAGCACAACGTCCCAAGCTTCTGACCCCAACATCACTAACATGGCTCACACCTATCTCATGTTCTCCCTCCCTGACCTTTTCACCAACTCCCTCATTCACCCAATCCGCATTTACCTTCGCGCCCAGGGCATCACCCACCCCCTCACCCTCGCCTCCCTCGCCGGAGCCGTCTTCCATTTCCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006855 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0010008 GO:0010015 GO:0010150 GO:0010252 GO:0012505 GO:0015238 GO:0015893 GO:0016020 GO:0022622 GO:0022857 GO:0031090 GO:0031347 GO:0031348 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0040008 GO:0042221 GO:0042493 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046620 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048583 GO:0048585 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0080134 GO:0090693 GO:0097708 GO:0098588 GO:0098771 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

197

Amino Acids

20.99

Weight (kDa)

8.4

Isoelectric Point (pI)

64.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	75 - 145	2.1e-14	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29140
fragaria_vesca	FvH4_1g06290 FvH4_3g02790 FvH4_3g02831
malus_domestica	MD02G1066700.v1.1 MD15G1197200.v1.1
prunus_persica	Prupe.7G218600_v2.0.a1
pyrus_communis	pycom02g05280 pycom15g17620
rosa_chinensis	RchiOBHm_Chr2g0091991
rosa_laevigata	RLG00000016268
rosa_multiflora	Rmu_co8445145.1_g000001 Rmu_sc0000524.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149550
rosa_rugosa	Rorug02G0022200
rosa_samantha	Rh2AG067900 Rh2BG067200 Rh2CG068500
rosa_wichuraiana	Rw2G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	151
AccBSI	CCGCTC	1 cut(s)	258
AccII	CGCG	1 cut(s)	527
AciI	CCGC	5 cut(s)	119, 256, 286, 386, 513
AcoI	YGGCCR	1 cut(s)	283
AfiI	CCNNNNNNNGG	2 cut(s)	77, 373
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	288, 530
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	3 cut(s)	127, 239, 424
AluI	AGCT	3 cut(s)	127, 239, 424
Alw21I	GWGCWC	2 cut(s)	360, 412
Alw26I	GTCTC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	3 cut(s)	216, 283, 364
ApeKI	GCWGC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	529
AsuHPI	GGTGA	4 cut(s)	480, 496, 531, 543
AvaI	CYCGRG	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	2 cut(s)	360, 412
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	559
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BciT130I	CCWGG	2 cut(s)	290, 532
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	3 cut(s)	128, 320, 368
BfuAI	ACCTGC	1 cut(s)	46
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	4 cut(s)	48, 119, 286, 386
BlpI	GCTNAGC	1 cut(s)	259
BlsI	GCNGC	4 cut(s)	49, 120, 287, 387
Bme1390I	CCNGG	2 cut(s)	290, 532
BmeT110I	CYCGRG	1 cut(s)	310
BmiI	GGNNCC	3 cut(s)	153, 384, 573
BmrFI	CCNGG	2 cut(s)	290, 532
BmsI	GCATC	3 cut(s)	70, 183, 545
BpiI	GAAGAC	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	6 cut(s)	280, 289, 309, 372, 530, 531
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 373
Bse1I	ACTGG	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	290, 532
BseDI	CCNNGG	6 cut(s)	280, 289, 309, 372, 530, 531
BseLI	CCNNNNNNNGG	2 cut(s)	77, 373
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	219
BseX3I	CGGCCG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	527
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	3 cut(s)	218, 285, 366
BshNI	GGYRCC	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	2 cut(s)	360, 412
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	363, 569
BslFI	GGGAC	3 cut(s)	148, 187, 402
BslI	CCNNNNNNNGG	2 cut(s)	77, 373
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	3 cut(s)	148, 187, 402
BsnI	GGCC	3 cut(s)	218, 285, 366
Bso31I	GGTCTC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	360, 412
Bsp1720I	GCTNAGC	1 cut(s)	259
BspACI	CCGC	5 cut(s)	119, 256, 286, 386, 513
BspANI	GGCC	3 cut(s)	218, 285, 366
BspCNI	CTCAG	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	527
BspLI	GGNNCC	3 cut(s)	153, 384, 573
BspMI	ACCTGC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	219
BssECI	CCNNGG	6 cut(s)	280, 289, 309, 372, 530, 531
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	290, 532
Bst6I	CTCTTC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	259, 298
BstFNI	CGCG	1 cut(s)	527
BstHHI	GCGC	1 cut(s)	529
BstMAI	GTCTC	1 cut(s)	188
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	6 cut(s)	67, 124, 291, 407, 533, 565
BstNI	CCWGG	2 cut(s)	290, 532
BstSCI	CCNGG	2 cut(s)	288, 530
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	570
BstZI	CGGCCG	1 cut(s)	283
BsuRI	GGCC	3 cut(s)	218, 285, 366
BveI	ACCTGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	529
CviAII	CATG	4 cut(s)	271, 447, 465, 591
DdeI	CTNAG	2 cut(s)	259, 298
EaeI	YGGCCR	1 cut(s)	283
EagI	CGGCCG	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EclXI	CGGCCG	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	188
Eco52I	CGGCCG	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	288, 530
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	4 cut(s)	274, 450, 468, 594
FaiI	YATR	7 cut(s)	227, 272, 326, 380, 448, 466, 592
FaqI	GGGAC	3 cut(s)	148, 187, 402
FatI	CATG	4 cut(s)	270, 446, 464, 590
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	4 cut(s)	48, 119, 286, 386
Fsp4HI	GCNGC	4 cut(s)	48, 119, 286, 386
FspBI	CTAG	3 cut(s)	128, 320, 368
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	4 cut(s)	48, 119, 286, 386
HaeIII	GGCC	3 cut(s)	218, 285, 366
HapII	CCGG	2 cut(s)	363, 569
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	4 cut(s)	274, 450, 468, 594
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HindIII	AAGCTT	1 cut(s)	422
HpaII	CCGG	2 cut(s)	363, 569
HphI	GGTGA	4 cut(s)	480, 496, 531, 543
Hpy188I	TCNGA	3 cut(s)	112, 407, 429
Hpy188III	TCNNGA	1 cut(s)	92
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	4 cut(s)	27, 229, 412, 532
HpyCH4IV	ACGT	2 cut(s)	183, 415
HpyCH4V	TGCA	2 cut(s)	61, 174
HpyF10VI	GCNNNNNNNGC	6 cut(s)	67, 124, 291, 407, 533, 565
HpyF3I	CTNAG	2 cut(s)	259, 298
HpySE526I	ACGT	2 cut(s)	183, 415
Hsp92II	CATG	4 cut(s)	274, 450, 468, 594
HspAI	GCGC	1 cut(s)	527
LmnI	GCTCC	3 cut(s)	382, 407, 571
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	3 cut(s)	70, 183, 545
MaeI	CTAG	3 cut(s)	128, 320, 368
MaeII	ACGT	2 cut(s)	183, 415
MaeIII	GTNAC	1 cut(s)	315
MbiI	CCGCTC	1 cut(s)	258
MboII	GAAGA	3 cut(s)	91, 94, 570
MhlI	GDGCHC	2 cut(s)	360, 412
MluCI	AATT	2 cut(s)	25, 168
MnlI	CCTC	9 cut(s)	107, 290, 319, 484, 508, 559, 565, 570, 574
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	445
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	2 cut(s)	363, 569
MspR9I	CCNGG	2 cut(s)	290, 532
MvaI	CCWGG	2 cut(s)	290, 532
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	6 cut(s)	67, 124, 291, 407, 533, 565
NlaIII	CATG	4 cut(s)	274, 450, 468, 594
NlaIV	GGNNCC	3 cut(s)	153, 384, 573
NmeAIII	GCCGAG	2 cut(s)	76, 261
NmuCI	GTSAC	1 cut(s)	315
PaqCI	CACCTGC	1 cut(s)	46
PasI	CCCWGGG	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PflFI	GACNNNGTC	2 cut(s)	185, 199
PkrI	GCNGC	4 cut(s)	49, 120, 287, 387
Psp6I	CCWGG	2 cut(s)	288, 530
PspGI	CCWGG	2 cut(s)	288, 530
PspN4I	GGNNCC	3 cut(s)	153, 384, 573
PsyI	GACNNNGTC	2 cut(s)	185, 199
RseI	CAYNNNNRTG	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	4 cut(s)	48, 119, 286, 386
ScrFI	CCNGG	2 cut(s)	290, 532
SduI	GDGCHC	2 cut(s)	360, 412
SfaNI	GCATC	3 cut(s)	70, 183, 545
SmiMI	CAYNNNNRTG	1 cut(s)	445
Sse9I	AATT	2 cut(s)	25, 168
SsiI	CCGC	5 cut(s)	119, 256, 286, 386, 513
SspMI	CTAG	3 cut(s)	128, 320, 368
StyD4I	CCNGG	2 cut(s)	288, 530
StyI	CCWWGG	1 cut(s)	372
TaiI	ACGT	2 cut(s)	186, 418
TaqI	TCGA	1 cut(s)	93
TasI	AATT	2 cut(s)	25, 168
TauI	GCSGC	3 cut(s)	121, 288, 388
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	315
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	315
TspGWI	ACGGA	1 cut(s)	343
Tth111I	GACNNNGTC	2 cut(s)	185, 199
XspI	CTAG	3 cut(s)	128, 320, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.