AT4G29520

LOCATED IN endoplasmic reticulum, plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014440
Physical Location & Seq
Reverse (-)
14493911 .. 14495789
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29520.1

Sequence Viewer

Length: 921 bp
ATGGTTGTGATGAATCGAGTTCTGGTAGCTCTTACATTAGCTCTGCTAGCTTCGTCGGCGTTATTACCTGTTTCCGATGCCGCGAAGAAACCTTCTTCGACGCCGAGAAAGGAGGATGTTCCGTATATAAAGTGTCAGGTTTGCGAGAAACTATCTTCTCGGTTACACCAGCTAGTGAAGGAGAAGCAACAACAGATCTCTCCCAAAAAGATCTCGGAGTATGAGATCATTGAGATTGCTGAAAATGTCTGCAATTTGAAGAAAGAGGAAGCTGATTGGATGCTTAAGATTGACATTGTTGAGAAAGGCGATAATCTTGTGCTGGTTGAGCAACAAGAAGAAGGGATGTGTAATTCCAAGTGCAAGACGATCGAGAATGCTTGTCAAAAGGTCATTGGTTACTCAGACACTGATGTTGCAGAGTATATTTACAAGTCTAAGCCTGATCTTGTTTCACTGGTGAATCATCTATGCAAAGATTTGACCGATGCTTGCAGCAAGAAACCTCCTCCTGTTCCCAAGGATCGGGTTCCTGGAGAACCATTTGTTGCAAAACCATCAAAAGATGCTGAAATGGACAAGATTTTGAGATCTATGCAGGGTATGCCAGGAGCACCTGGCATGAAGGTATACTCTAGAGAAGATATAGAGAAGGGGAATATCGGTAATGAAGATGATGATGGCGACGATGATGAAGATGAGGAAGAAGATGATAAGTTTCCCAAGAACTTGGGAAAAGTTTTGAAAGAGAAAGAGAGTAAAACAGAAGAATTGAAGAAGACAATCACTAAGGAGTTCAAGAAGAAAGGTGAGGCTCTGAAGAGACATGCACAGAAAGTGTCAAACCGGGTCCGGAGATGGTGGAAAGGACTTGGATCGTCTTCTTCAAAGAAACCTAAATCCGGAAAGTCTGAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

34.36

Weight (kDa)

7.96

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29520
fragaria_vesca FvH4_1g07000 FvH4_1g07000
malus_domestica MD02G1074400.v1.1 MD15G1203900.v1.1
prunus_persica Prupe.7G213500_v2.0.a1
pyrus_communis pycom02g05880
rosa_chinensis RchiOBHm_Chr2g0092951
rosa_laevigata RLG00000016352
rosa_multiflora Rmu_sc0000965.1_g000016
rosa_roxburghii Rroxscaffold_2G00148680
rosa_rugosa Rorug02G0030600
rosa_samantha Rh2AG076600 Rh2BG077900 Rh2CG080100 Rh2DG075200
rosa_wichuraiana Rw2G006960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 630
AccII CGCG 1 cut(s) 83
AccIII TCCGGA 2 cut(s) 852, 902
AciI CCGC 1 cut(s) 81
AclWI GGATC 2 cut(s) 531, 883
AcuI CTGAAG 1 cut(s) 839
AcyI GRCGYC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 525, 902
AflII CTTAAG 1 cut(s) 284
AgsI TTSAA 5 cut(s) 259, 745, 775, 799, 888
AjnI CCWGG 3 cut(s) 532, 607, 616
AluBI AGCT 6 cut(s) 29, 41, 50, 172, 272, 916
AluI AGCT 6 cut(s) 29, 41, 50, 172, 272, 916
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 1 cut(s) 817
AlwI GGATC 2 cut(s) 531, 883
AlwNI CAGNNNCTG 1 cut(s) 410
Aor13HI TCCGGA 2 cut(s) 852, 902
ApeKI GCWGC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 850
AsuC2I CCSGG 1 cut(s) 848
AsuHPI GGTGA 2 cut(s) 472, 821
AsuNHI GCTAGC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 850
BbsI GAAGAC 2 cut(s) 785, 873
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 1 cut(s) 507
BccI CCATC 3 cut(s) 565, 674, 852
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BciT130I CCWGG 3 cut(s) 534, 609, 618
BcnI CCSGG 1 cut(s) 848
BcoDI GTCTC 1 cut(s) 817
BfaI CTAG 3 cut(s) 47, 173, 636
BfmI CTRYAG 1 cut(s) 917
BfrI CTTAAG 1 cut(s) 284
BglII AGATCT 3 cut(s) 195, 210, 590
BisI GCNGC 2 cut(s) 81, 496
BlsI GCNGC 2 cut(s) 82, 497
Bme1390I CCNGG 4 cut(s) 534, 609, 618, 848
Bme18I GGWCC 1 cut(s) 850
BmgT120I GGNCC 1 cut(s) 850
BmiI GGNNCC 2 cut(s) 531, 851
BmrFI CCNGG 4 cut(s) 534, 609, 618, 848
BmsI GCATC 4 cut(s) 67, 270, 478, 556
BmtI GCTAGC 1 cut(s) 50
BpiI GAAGAC 2 cut(s) 785, 873
BpmI CTGGAG 1 cut(s) 555
BpuMI CCSGG 1 cut(s) 848
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 519
BsaWI WCCGGW 2 cut(s) 852, 902
Bsc4I CCNNNNNNNGG 2 cut(s) 525, 902
Bse1I ACTGG 1 cut(s) 462
BseAI TCCGGA 2 cut(s) 852, 902
BseBI CCWGG 3 cut(s) 534, 609, 618
BseDI CCNNGG 1 cut(s) 519
BseGI GGATG 3 cut(s) 121, 285, 351
BseLI CCNNNNNNNGG 2 cut(s) 525, 902
BseMII CTCAG 2 cut(s) 417, 903
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 498
BseXI GCAGC 1 cut(s) 507
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 3 cut(s) 847, 853, 903
BslI CCNNNNNNNGG 2 cut(s) 525, 902
BsmAI GTCTC 1 cut(s) 817
BsmI GAATGC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 616
Bsp13I TCCGGA 2 cut(s) 852, 902
Bsp143I GATC 8 cut(s) 195, 210, 225, 369, 445, 523, 590, 875
BspACI CCGC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 416, 904
BspEI TCCGGA 2 cut(s) 852, 902
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 531, 851
BspOI GCTAGC 1 cut(s) 50
BspPI GGATC 2 cut(s) 531, 883
BspTI CTTAAG 1 cut(s) 284
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 8 cut(s) 195, 210, 225, 369, 445, 523, 590, 875
BssNAI GTATAC 1 cut(s) 631
BssNI GRCGYC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 519
Bst1107I GTATAC 1 cut(s) 631
Bst2UI CCWGG 3 cut(s) 534, 609, 618
Bst6I CTCTTC 1 cut(s) 815
BstACI GRCGYC 1 cut(s) 101
BstAFI CTTAAG 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 604
BstC8I GCNNGC 2 cut(s) 48, 493
BstDEI CTNAG 4 cut(s) 403, 438, 789, 912
BstF5I GGATG 3 cut(s) 121, 285, 351
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 8 cut(s) 198, 213, 228, 372, 448, 526, 593, 878
BstMAI GTCTC 1 cut(s) 817
BstMBI GATC 8 cut(s) 195, 210, 225, 369, 445, 523, 590, 875
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 4 cut(s) 47, 56, 328, 604
BstNI CCWGG 3 cut(s) 534, 609, 618
BstNSI RCATGY 1 cut(s) 830
BstSCI CCNGG 4 cut(s) 532, 607, 616, 846
BstSFI CTRYAG 1 cut(s) 917
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 507
BstV2I GAAGAC 2 cut(s) 785, 873
BstX2I RGATCY 3 cut(s) 195, 210, 590
BstXI CCANNNNNNTGG 1 cut(s) 730
BstYI RGATCY 3 cut(s) 195, 210, 590
BstZ17I GTATAC 1 cut(s) 631
BtsCI GGATG 3 cut(s) 121, 285, 351
BtsIMutI CAGTG 2 cut(s) 408, 455
Cac8I GCNNGC 2 cut(s) 48, 493
CaiI CAGNNNCTG 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 850
CseI GACGC 1 cut(s) 109
CviAII CATG 2 cut(s) 622, 827
CviJI RGCY 8 cut(s) 29, 41, 50, 172, 272, 442, 815, 916
CviKI_1 RGCY 8 cut(s) 29, 41, 50, 172, 272, 442, 815, 916
DdeI CTNAG 4 cut(s) 403, 438, 789, 912
DpnI GATC 8 cut(s) 197, 212, 227, 371, 447, 525, 592, 877
DpnII GATC 8 cut(s) 195, 210, 225, 369, 445, 523, 590, 875
Eam1104I CTCTTC 1 cut(s) 815
EarI CTCTTC 1 cut(s) 815
Eco130I CCWWGG 1 cut(s) 519
Eco47I GGWCC 1 cut(s) 850
Eco57I CTGAAG 1 cut(s) 839
EcoRII CCWGG 3 cut(s) 532, 607, 616
EcoT14I CCWWGG 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 2 cut(s) 625, 830
FatI CATG 2 cut(s) 621, 826
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 2 cut(s) 81, 496
FokI GGATG 3 cut(s) 128, 292, 358
Fsp4HI GCNGC 2 cut(s) 81, 496
FspBI CTAG 3 cut(s) 47, 173, 636
GluI GCNGC 2 cut(s) 81, 496
GsuI CTGGAG 1 cut(s) 555
HapII CCGG 3 cut(s) 847, 853, 903
HgaI GACGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 2 cut(s) 625, 830
HinfI GANTC 2 cut(s) 13, 463
HpaII CCGG 3 cut(s) 847, 853, 903
HphI GGTGA 2 cut(s) 472, 821
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 5 cut(s) 76, 217, 406, 819, 913
Hpy188III TCNNGA 5 cut(s) 373, 636, 799, 853, 903
Hpy8I GTNNAC 1 cut(s) 631
Hpy99I CGWCG 3 cut(s) 58, 103, 689
HpyAV CCTTC 5 cut(s) 102, 172, 335, 619, 646
HpyCH4V TGCA 8 cut(s) 252, 363, 419, 474, 495, 551, 598, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 56, 328, 604
HpyF3I CTNAG 4 cut(s) 403, 438, 789, 912
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 2 cut(s) 625, 830
Kpn2I TCCGGA 2 cut(s) 852, 902
Kzo9I GATC 8 cut(s) 195, 210, 225, 369, 445, 523, 590, 875
LmnI GCTCC 1 cut(s) 611
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 4 cut(s) 67, 270, 478, 556
MaeI CTAG 3 cut(s) 47, 173, 636
MaeIII GTNAC 2 cut(s) 162, 398
MalI GATC 8 cut(s) 197, 212, 227, 371, 447, 525, 592, 877
MboI GATC 8 cut(s) 195, 210, 225, 369, 445, 523, 590, 875
MflI RGATCY 3 cut(s) 195, 210, 590
MhlI GDGCHC 1 cut(s) 616
MluCI AATT 3 cut(s) 253, 352, 770
MnlI CCTC 6 cut(s) 106, 259, 516, 519, 694, 805
MroI TCCGGA 2 cut(s) 852, 902
MseI TTAA 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 3 cut(s) 847, 853, 903
MspR9I CCNGG 4 cut(s) 534, 609, 618, 848
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 3 cut(s) 534, 609, 618
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 47, 56, 328, 604
NciI CCSGG 1 cut(s) 848
NdeII GATC 8 cut(s) 195, 210, 225, 369, 445, 523, 590, 875
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 2 cut(s) 625, 830
NlaIV GGNNCC 2 cut(s) 531, 851
NmeAIII GCCGAG 1 cut(s) 129
NspI RCATGY 1 cut(s) 830
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 2 cut(s) 13, 463
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 2 cut(s) 82, 497
Ple19I CGATCG 1 cut(s) 372
Psp6I CCWGG 3 cut(s) 532, 607, 616
PspGI CCWGG 3 cut(s) 532, 607, 616
PspN4I GGNNCC 2 cut(s) 531, 851
PspPI GGNCC 1 cut(s) 850
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 3 cut(s) 195, 210, 590
PvuI CGATCG 1 cut(s) 372
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 81, 496
Sau3AI GATC 8 cut(s) 195, 210, 225, 369, 445, 523, 590, 875
Sau96I GGNCC 1 cut(s) 850
ScrFI CCNGG 4 cut(s) 534, 609, 618, 848
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 4 cut(s) 67, 270, 478, 556
SfcI CTRYAG 1 cut(s) 917
SinI GGWCC 1 cut(s) 850
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 3 cut(s) 253, 352, 770
SsiI CCGC 1 cut(s) 81
SspMI CTAG 3 cut(s) 47, 173, 636
StyD4I CCNGG 4 cut(s) 532, 607, 616, 846
StyI CCWWGG 1 cut(s) 519
TaqI TCGA 3 cut(s) 16, 98, 372
TaqII GACCGA 1 cut(s) 500
TasI AATT 3 cut(s) 253, 352, 770
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 13, 463
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 2 cut(s) 415, 462
TseI GCWGC 1 cut(s) 495
TspDTI ATGAA 4 cut(s) 26, 638, 684, 708
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 2 cut(s) 415, 462
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 850
XbaI TCTAGA 1 cut(s) 635
XceI RCATGY 1 cut(s) 830
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 3 cut(s) 47, 173, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.