Prupe.7G213500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014440
Physical Location & Seq
Forward (+)
19409462 .. 19412135
2674 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G213500.1

Sequence Viewer

Length: 912 bp
ATGGCGAAACTGAAGCGAATTCTTGTAGCAATCTCAGTGTTGGTGGTATTAGCATGTATGCCAATCTCCGAGTGTGCTAAGAAACCAATGACTGTTGCGAGGAAGGAAGACATTCCTTTCATCAAATGCCAAGTCTGTGAAAAGCTCGCAGCTCAGCTACACCAACAAGTTAAGAAGAAGCAAGCTGAGATCACCCCCAAGAAGATCTCGGAGTATCAGATTATTGAGATTTCGGAGAATGTCTGTAATTTGAAGAAGGCAGAGGCGGATTGGATTTTGCAGATTGATATAGTTGAGCAAGGAGATAAGTTGGAGCTGGTGGAACAAGGTTCTGAAGGACAATGTAATTCGGAATGCAAGACAATAGAGCGAGCTTGTCAGGAGGTTTTGGGGTATTCTGATACTGATGTTGCTGAATATCTATATAAATCCAAGCCTGACATTGATTCATTGGTTAATTATCTATGCAAAGACCTTACTAAAGCATGCAGTACCAAGCCTCCCCGAGTTCCTAAGAATAGGACTCCTGGAGAAATTTTTGTGGCCAAGTCAGCTAAAGAAGCTGAAATGGAAAAGATAATGAAATCTATGGAGGGTATGCCAGGAGCCCCAGGCATGAAAATGTATTCAAGAGATGAATTGATGAATCAAAATTTTGGTGGTGAAGATGCCGATGATGAAGATGATGACGATGAGGACACGCAGATTCCCTCAAAATTGGGAAAAGTTTTGAGAGAAAAAGAAAGCGCAAAGAGTGACTTGAAACAGAGGATCACCAACGGAATTTTGAAGACCAAGGAGACACTAAAGAAACATGCAAACCAAGTCTCTAACTGGTTACGGAAAACGTGGAGGGGACTGAAAAAGCCAGCTTCAAAGAAGAGTACAAAGGCCAACAAGGCAGAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

304

Amino Acids

34.07

Weight (kDa)

8.52

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29520
fragaria_vesca FvH4_1g07000 FvH4_1g07000
malus_domestica MD02G1074400.v1.1 MD15G1203900.v1.1
prunus_persica Prupe.7G213500_v2.0.a1
pyrus_communis pycom02g05880
rosa_chinensis RchiOBHm_Chr2g0092951
rosa_laevigata RLG00000016352
rosa_multiflora Rmu_sc0000965.1_g000016
rosa_roxburghii Rroxscaffold_2G00148680
rosa_rugosa Rorug02G0030600
rosa_samantha Rh2AG076600 Rh2BG077900 Rh2CG080100 Rh2DG075200
rosa_wichuraiana Rw2G006960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 779
AcoI YGGCCR 1 cut(s) 543
AcsI RAATTY 4 cut(s) 18, 534, 652, 783
AcuI CTGAAG 2 cut(s) 32, 354
AfaI GTAC 2 cut(s) 493, 886
AgsI TTSAA 5 cut(s) 253, 630, 763, 790, 876
AjnI CCWGG 3 cut(s) 526, 601, 610
Alw26I GTCTC 2 cut(s) 794, 832
AlwI GGATC 1 cut(s) 779
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 2 cut(s) 543, 891
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 4 cut(s) 18, 534, 652, 783
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 749
AsuHPI GGTGA 3 cut(s) 184, 674, 766
AvaI CYCGRG 1 cut(s) 504
BaeI ACNNNNGTAYC 2 cut(s) 393, 426
BalI TGGCCA 1 cut(s) 545
BanII GRGCYC 1 cut(s) 610
BbsI GAAGAC 2 cut(s) 114, 797
BbvI GCAGC 1 cut(s) 161
BciT130I CCWGG 3 cut(s) 528, 603, 612
BcoDI GTCTC 2 cut(s) 794, 832
BglI GCCNNNNNGGC 1 cut(s) 899
BglII AGATCT 1 cut(s) 204
BisI GCNGC 1 cut(s) 150
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 3 cut(s) 528, 603, 612
BmeT110I CYCGRG 1 cut(s) 504
BmiI GGNNCC 1 cut(s) 607
BmrFI CCNGG 3 cut(s) 528, 603, 612
BmsI GCATC 1 cut(s) 658
BpiI GAAGAC 2 cut(s) 114, 797
BpmI CTGGAG 1 cut(s) 549
Bpu1102I GCTNAGC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 610, 795
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bse1I ACTGG 1 cut(s) 839
BseBI CCWGG 3 cut(s) 528, 603, 612
BseDI CCNNGG 2 cut(s) 610, 795
BseMII CTCAG 3 cut(s) 48, 167, 177
BseNI ACTGG 1 cut(s) 839
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 2 cut(s) 545, 893
BsiHKCI CYCGRG 1 cut(s) 504
BslFI GGGAC 1 cut(s) 870
BsmAI GTCTC 2 cut(s) 794, 832
BsmFI GGGAC 1 cut(s) 870
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 2 cut(s) 545, 893
BsoBI CYCGRG 1 cut(s) 504
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 3 cut(s) 189, 204, 771
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 1 cut(s) 266
BspANI GGCC 2 cut(s) 545, 893
BspCNI CTCAG 3 cut(s) 47, 166, 178
BspLI GGNNCC 1 cut(s) 607
BspPI GGATC 1 cut(s) 779
BsrI ACTGG 1 cut(s) 839
BssECI CCNNGG 2 cut(s) 610, 795
BssMI GATC 3 cut(s) 189, 204, 771
BssT1I CCWWGG 1 cut(s) 795
Bst2UI CCWGG 3 cut(s) 528, 603, 612
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 875
BstC8I GCNNGC 5 cut(s) 147, 183, 372, 487, 870
BstDEI CTNAG 5 cut(s) 34, 78, 153, 186, 513
BstHHI GCGC 1 cut(s) 749
BstKTI GATC 3 cut(s) 192, 207, 774
BstMAI GTCTC 2 cut(s) 794, 832
BstMBI GATC 3 cut(s) 189, 204, 771
BstMWI GCNNNNNNNGC 3 cut(s) 551, 560, 899
BstNI CCWGG 3 cut(s) 528, 603, 612
BstNSI RCATGY 3 cut(s) 57, 489, 818
BstSCI CCNGG 3 cut(s) 526, 601, 610
BstV1I GCAGC 1 cut(s) 161
BstV2I GAAGAC 2 cut(s) 114, 797
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BsuRI GGCC 2 cut(s) 545, 893
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 5 cut(s) 147, 183, 372, 487, 870
CfoI GCGC 1 cut(s) 749
Csp6I GTAC 2 cut(s) 492, 885
CviAII CATG 4 cut(s) 54, 486, 616, 815
CviQI GTAC 2 cut(s) 492, 885
DdeI CTNAG 5 cut(s) 34, 78, 153, 186, 513
DpnI GATC 3 cut(s) 191, 206, 773
DpnII GATC 3 cut(s) 189, 204, 771
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 1 cut(s) 875
EarI CTCTTC 1 cut(s) 875
EciI GGCGGA 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 795
Eco24I GRGCYC 1 cut(s) 610
Eco57I CTGAAG 2 cut(s) 32, 354
Eco88I CYCGRG 1 cut(s) 504
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 3 cut(s) 526, 601, 610
EcoT14I CCWWGG 1 cut(s) 795
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 795
FaeI CATG 4 cut(s) 57, 489, 619, 818
FalI AAGNNNNNCTT 2 cut(s) 743, 775
FaqI GGGAC 1 cut(s) 870
FatI CATG 4 cut(s) 53, 485, 615, 814
Fnu4HI GCNGC 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 1 cut(s) 150
GlaI GCGC 1 cut(s) 748
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 2 cut(s) 545, 893
HhaI GCGC 1 cut(s) 749
Hin1II CATG 4 cut(s) 57, 489, 619, 818
Hin6I GCGC 1 cut(s) 747
HinP1I GCGC 1 cut(s) 747
HinfI GANTC 4 cut(s) 446, 523, 646, 706
HphI GGTGA 3 cut(s) 184, 674, 766
Hpy188I TCNGA 7 cut(s) 70, 211, 219, 235, 334, 352, 400
Hpy188III TCNNGA 2 cut(s) 380, 630
HpyAV CCTTC 3 cut(s) 97, 250, 329
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 848
HpyCH4V TGCA 5 cut(s) 280, 357, 468, 489, 818
HpyF10VI GCNNNNNNNGC 3 cut(s) 551, 560, 899
HpyF3I CTNAG 5 cut(s) 34, 78, 153, 186, 513
HpySE526I ACGT 1 cut(s) 848
Hsp92II CATG 4 cut(s) 57, 489, 619, 818
HspAI GCGC 1 cut(s) 747
Kzo9I GATC 3 cut(s) 189, 204, 771
LmnI GCTCC 2 cut(s) 313, 605
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 658
MaeII ACGT 1 cut(s) 848
MaeIII GTNAC 2 cut(s) 755, 837
MalI GATC 3 cut(s) 191, 206, 773
MboI GATC 3 cut(s) 189, 204, 771
MboII GAAGA 8 cut(s) 119, 187, 214, 265, 677, 692, 802, 892
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 610
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 9 cut(s) 18, 247, 346, 457, 534, 638, 652, 716, 783
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 1 cut(s) 517
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 9 cut(s) 93, 256, 376, 510, 586, 688, 721, 762, 846
Mox20I TGGCCA 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 111
MscI TGGCCA 1 cut(s) 545
MseI TTAA 2 cut(s) 171, 456
MslI CAYNNNNRTG 1 cut(s) 620
Msp20I TGGCCA 1 cut(s) 545
MspR9I CCNGG 3 cut(s) 528, 603, 612
Mva1269I GAATGC 1 cut(s) 359
MvaI CCWGG 3 cut(s) 528, 603, 612
MwoI GCNNNNNNNGC 3 cut(s) 551, 560, 899
NdeII GATC 3 cut(s) 189, 204, 771
NlaIII CATG 4 cut(s) 57, 489, 619, 818
NlaIV GGNNCC 1 cut(s) 607
NmuCI GTSAC 1 cut(s) 755
NspI RCATGY 3 cut(s) 57, 489, 818
PaeI GCATGC 1 cut(s) 489
PctI GAATGC 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 3 cut(s) 446, 646, 706
PfoI TCCNGGA 1 cut(s) 526
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
Psp6I CCWGG 3 cut(s) 526, 601, 610
PspGI CCWGG 3 cut(s) 526, 601, 610
PspN4I GGNNCC 1 cut(s) 607
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 2 cut(s) 493, 886
RsaNI GTAC 2 cut(s) 492, 885
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 2 cut(s) 171, 456
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 3 cut(s) 189, 204, 771
SchI GAGTC 1 cut(s) 517
ScrFI CCNGG 3 cut(s) 528, 603, 612
SduI GDGCHC 1 cut(s) 610
SfaNI GCATC 1 cut(s) 658
SmiMI CAYNNNNRTG 1 cut(s) 620
SphI GCATGC 1 cut(s) 489
Sse9I AATT 9 cut(s) 18, 247, 346, 457, 534, 638, 652, 716, 783
SsiI CCGC 1 cut(s) 266
StyD4I CCNGG 3 cut(s) 526, 601, 610
StyI CCWWGG 1 cut(s) 795
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 851
TasI AATT 9 cut(s) 18, 247, 346, 457, 534, 638, 652, 716, 783
TatI WGTACW 1 cut(s) 884
TfiI GAWTC 3 cut(s) 446, 646, 706
Tru1I TTAA 2 cut(s) 171, 456
Tru9I TTAA 2 cut(s) 171, 456
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 7 cut(s) 109, 438, 596, 632, 651, 659, 693
TspGWI ACGGA 2 cut(s) 795, 856
TspRI CASTG 1 cut(s) 42
XapI RAATTY 4 cut(s) 18, 534, 652, 783
XceI RCATGY 3 cut(s) 57, 489, 818
XmnI GAANNNNTTC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.