Rh2AG076600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014440
Physical Location & Seq
Reverse (-)
6445599 .. 6448215
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG076600.1

Sequence Viewer

Length: 711 bp
ATGGCGAAAGTGAGGCCAATTCAAGTTTGGATCTTTGCAGTGGTGGTGATCTCGGCATTGGTATCGATCTCCGAGTGTGCGAAGAAGCCAGTGACTGTGGCGAGGAAGGAAGACATTCCCTTCATCAAATGCCAGGTCTGTCAGAAGCTCGCAGCTCAGTTGCACCACCAAGTTGAGAAGAAGAGAGCTGAGGTCGAACCCAAGAAGATCTCGGAGTATCATATTATTGAGATTACGGAGAATGTTTGTAATCTGAAGAAGGCGGAGGCGGATTGGATTTTGCTGATTGATATAGTTGAACAAGGAGATAAGTTGCAGCTGGTGGAACAAGAATCTGAAGGACAATGCAATTCCGAATGCAAGACGATCGAGCGAGCCTGTCAGGAGGTTCTGGGGTATTCTGATACTGATGTCGCTGAATATCTATACAAATCCAAACCTGACATTGATTCCTTGGTTAATTATCTATGCAAAGACCTTACTACAGCCTGCAGTGCCAAGCCTCCCCCAGTTCCTAAGGGTAGGACTCCTGGAGAAGTTTTTGTGCCCAAGTCATCAAAAGAGGCTGAAATGGAAAAAATAATGAAATCTATGGAGGTAATTGTCCTTTCATTGGTGCAGAGCTTCATTTCATACAATGCTAGTGTTTTGCTGAATGTTGTGCCATGTTCTTGTTTACCGTTCAGGGTATGCCAGGAGCCCCAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.4

Weight (kDa)

5.77

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29520
fragaria_vesca FvH4_1g07000 FvH4_1g07000
malus_domestica MD02G1074400.v1.1 MD15G1203900.v1.1
prunus_persica Prupe.7G213500_v2.0.a1
pyrus_communis pycom02g05880
rosa_chinensis RchiOBHm_Chr2g0092951
rosa_laevigata RLG00000016352
rosa_multiflora Rmu_sc0000965.1_g000016
rosa_roxburghii Rroxscaffold_2G00148680
rosa_rugosa Rorug02G0030600
rosa_samantha Rh2AG076600 Rh2BG077900 Rh2CG080100 Rh2DG075200
rosa_wichuraiana Rw2G006960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 263, 269
AclWI GGATC 1 cut(s) 38
AcuI CTGAAG 2 cut(s) 275, 357
AfiI CCNNNNNNNGG 1 cut(s) 613
AgsI TTSAA 2 cut(s) 23, 299
AjnI CCWGG 4 cut(s) 132, 529, 693, 702
AluBI AGCT 5 cut(s) 148, 155, 188, 319, 624
AluI AGCT 5 cut(s) 148, 155, 188, 319, 624
AlwI GGATC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 152, 316
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 516
BaeGI GKGCMC 1 cut(s) 549
BaeI ACNNNNGTAYC 2 cut(s) 396, 429
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 1 cut(s) 117
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 164, 328
BcgI CGANNNNNNTGC 4 cut(s) 45, 79, 349, 383
BciT130I CCWGG 4 cut(s) 134, 531, 695, 704
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 2 cut(s) 483, 490
BglII AGATCT 1 cut(s) 207
BisI GCNGC 2 cut(s) 153, 317
BlsI GCNGC 2 cut(s) 154, 318
Bme1390I CCNGG 4 cut(s) 134, 531, 695, 704
BmiI GGNNCC 1 cut(s) 699
BmrFI CCNGG 4 cut(s) 134, 531, 695, 704
BmrI ACTGGG 1 cut(s) 503
BmuI ACTGGG 1 cut(s) 503
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 552
Bpu10I CCTNAGC 1 cut(s) 189
Bsa29I ATCGAT 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 453, 702
Bsc4I CCNNNNNNNGG 1 cut(s) 613
Bse1I ACTGG 2 cut(s) 89, 509
Bse21I CCTNAGG 1 cut(s) 516
BseBI CCWGG 4 cut(s) 134, 531, 695, 704
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 453, 702
BseLI CCNNNNNNNGG 1 cut(s) 613
BseMII CTCAG 2 cut(s) 170, 180
BseNI ACTGG 2 cut(s) 89, 509
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 2 cut(s) 164, 328
BsgI GTGCAG 1 cut(s) 638
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 613
BsmI GAATGC 1 cut(s) 362
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 549, 702
Bsp143I GATC 5 cut(s) 30, 48, 66, 207, 366
BspACI CCGC 2 cut(s) 263, 269
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 169, 181
BspDI ATCGAT 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 699
BspMAI CTGCAG 1 cut(s) 494
BspPI GGATC 1 cut(s) 38
BsrI ACTGG 2 cut(s) 89, 509
BssECI CCNNGG 2 cut(s) 453, 702
BssMI GATC 5 cut(s) 30, 48, 66, 207, 366
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 4 cut(s) 134, 531, 695, 704
Bst4CI ACNGT 2 cut(s) 97, 681
Bst6I CTCTTC 1 cut(s) 176
BstC8I GCNNGC 3 cut(s) 150, 375, 490
BstDEI CTNAG 3 cut(s) 156, 189, 516
BstKTI GATC 5 cut(s) 33, 51, 69, 210, 369
BstMBI GATC 5 cut(s) 30, 48, 66, 207, 366
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 4 cut(s) 134, 531, 695, 704
BstSCI CCNGG 4 cut(s) 132, 529, 693, 702
BstSFI CTRYAG 2 cut(s) 483, 490
BstSLI GKGCMC 1 cut(s) 549
BstV1I GCAGC 2 cut(s) 164, 328
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 30, 207
BstYI RGATCY 2 cut(s) 30, 207
Bsu15I ATCGAT 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 516
BsuRI GGCC 1 cut(s) 16
BsuTUI ATCGAT 1 cut(s) 65
BtsI GCAGTG 2 cut(s) 45, 499
BtsIMutI CAGTG 3 cut(s) 45, 96, 499
Cac8I GCNNGC 3 cut(s) 150, 375, 490
CaiI CAGNNNCTG 1 cut(s) 95
ClaI ATCGAT 1 cut(s) 65
CviAII CATG 2 cut(s) 666, 708
DdeI CTNAG 3 cut(s) 156, 189, 516
DpnI GATC 5 cut(s) 32, 50, 68, 209, 368
DpnII GATC 5 cut(s) 30, 48, 66, 207, 366
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 2 cut(s) 278, 284
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 702
Eco57I CTGAAG 2 cut(s) 275, 357
Eco81I CCTNAGG 1 cut(s) 516
EcoRII CCWGG 4 cut(s) 132, 529, 693, 702
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 2 cut(s) 669, 711
FaiI YATR 9 cut(s) 222, 293, 427, 469, 593, 634, 667, 691, 709
FatI CATG 2 cut(s) 665, 707
Fnu4HI GCNGC 2 cut(s) 153, 317
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 2 cut(s) 153, 317
FspBI CTAG 1 cut(s) 642
GluI GCNGC 2 cut(s) 153, 317
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 2 cut(s) 669, 711
HinfI GANTC 3 cut(s) 332, 449, 526
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 677
Hpy188I TCNGA 7 cut(s) 73, 144, 214, 255, 337, 355, 403
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 1 cut(s) 677
HpyAV CCTTC 4 cut(s) 100, 130, 253, 332
HpyCH4III ACNGT 2 cut(s) 97, 681
HpyCH4V TGCA 8 cut(s) 38, 163, 316, 348, 360, 471, 492, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 3 cut(s) 156, 189, 516
Hsp92II CATG 2 cut(s) 669, 711
Kzo9I GATC 5 cut(s) 30, 48, 66, 207, 366
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 2 cut(s) 164, 328
MaeI CTAG 1 cut(s) 642
MaeIII GTNAC 1 cut(s) 91
MalI GATC 5 cut(s) 32, 50, 68, 209, 368
MboI GATC 5 cut(s) 30, 48, 66, 207, 366
MboII GAAGA 6 cut(s) 94, 122, 190, 193, 217, 268
MflI RGATCY 2 cut(s) 30, 207
MhlI GDGCHC 2 cut(s) 549, 702
MluCI AATT 4 cut(s) 18, 349, 460, 600
MlyI GAGTC 1 cut(s) 520
MnlI CCTC 8 cut(s) 6, 96, 184, 259, 379, 513, 556, 589
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 319
MspR9I CCNGG 4 cut(s) 134, 531, 695, 704
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 4 cut(s) 134, 531, 695, 704
MwoI GCNNNNNNNGC 1 cut(s) 494
NdeII GATC 5 cut(s) 30, 48, 66, 207, 366
NlaIII CATG 2 cut(s) 669, 711
NlaIV GGNNCC 1 cut(s) 699
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 91
PctI GAATGC 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 332, 449
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 2 cut(s) 154, 318
Ple19I CGATCG 1 cut(s) 369
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp6I CCWGG 4 cut(s) 132, 529, 693, 702
PspGI CCWGG 4 cut(s) 132, 529, 693, 702
PspN4I GGNNCC 1 cut(s) 699
PstI CTGCAG 1 cut(s) 494
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 2 cut(s) 30, 207
PvuI CGATCG 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 319
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 2 cut(s) 153, 317
Sau3AI GATC 5 cut(s) 30, 48, 66, 207, 366
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 4 cut(s) 134, 531, 695, 704
SduI GDGCHC 2 cut(s) 549, 702
SfcI CTRYAG 2 cut(s) 483, 490
Sse9I AATT 4 cut(s) 18, 349, 460, 600
SsiI CCGC 2 cut(s) 263, 269
SspMI CTAG 1 cut(s) 642
StyD4I CCNGG 4 cut(s) 132, 529, 693, 702
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 97, 681
TaqI TCGA 3 cut(s) 65, 195, 369
TasI AATT 4 cut(s) 18, 349, 460, 600
TfiI GAWTC 2 cut(s) 332, 449
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 3 cut(s) 45, 96, 499
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 152, 316
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 5 cut(s) 112, 599, 600, 616, 621
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 3 cut(s) 45, 96, 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.