RLG00000016352

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014440
Physical Location & Seq
Reverse (-)
5858953 .. 5861111
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016352

Sequence Viewer

Length: 921 bp
ATGGCGAAAGTGAGGCCAATTCAAGTTTGGATCTTTACAGTGGTGGTGATCTCGGCATTGGTATCGATCTCCGAGTGTGCGAAGAAGCCAGTGACTGTGGCGAGGAAGGAAGACATTCCCTTCATTAAATGCCAGGTCTGTGAGAAGCTCGCAGCTCAGTTGCACCACCAAATTGAGAAGAAGAGAGCTGAGGTCGAACCCAAGAAGATCTCGGAGTATCAGATTATTGAGATTACGGAGAATGTTTGTAATCTGAAGAAGGCGGAGGCGGATTGGATTTTGCTGATTGACATAGTTGAACAAGGAGATAAGTTGCAGCTGGTGGAACAAGAATCTGAAGGACAATGCAATTCCGAATGCAAGACGATCGAGCGAGCCTGTCAGGAGGTTCTGGGGTATTCTGATACTGATGTCGCTGAATATCTATACAAATCCAAACCTGACATTGATTCCTTGGTTAATTATCTATGCAAAGACCTTACTACAGCATGCAGTGCCAAGCCTCCCCCAGTTCCTAAGGGAAGGACTCCTGGAGAAGTTTTTGTGCCCAAGTCATCAAAAGAGGCTGAAATGGAAAAAATATTGAAATCTATGGAGGGTATGCCAGGAGCCCCAGGCATGAAAATGTACTCAAGAGATGATTTAATGAGCATGAAAAACTTTGGCGGCGAAGATGGTGATGACGAAGATGGTGATGACGAAGACGACACTCAATTTCCCTCAAAATTGGGAAGGGCTTTGAGAGACAAAGAAAACACAAAGAGTGATTTGAAACAGAAGATCACCCTTGGAATTATAAAGACCAAGGACACACTAAAGAAGCATGCAAACAAGGTCTCTAACTGGTTACGGCAAAGGTGGAGGGGACTCAAAAAGACAGCTTCAAAGAAGAGTACAAAGGCCGGCAAGGCAGAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.37

Weight (kDa)

7.95

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29520
fragaria_vesca FvH4_1g07000 FvH4_1g07000
malus_domestica MD02G1074400.v1.1 MD15G1203900.v1.1
prunus_persica Prupe.7G213500_v2.0.a1
pyrus_communis pycom02g05880
rosa_chinensis RchiOBHm_Chr2g0092951
rosa_laevigata RLG00000016352
rosa_multiflora Rmu_sc0000965.1_g000016
rosa_roxburghii Rroxscaffold_2G00148680
rosa_rugosa Rorug02G0030600
rosa_samantha Rh2AG076600 Rh2BG077900 Rh2CG080100 Rh2DG075200
rosa_wichuraiana Rw2G006960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 797
AciI CCGC 3 cut(s) 263, 269, 666
AclWI GGATC 1 cut(s) 38
AcuI CTGAAG 2 cut(s) 275, 357
AfaI GTAC 2 cut(s) 629, 895
AgsI TTSAA 5 cut(s) 23, 299, 586, 772, 885
AjnI CCWGG 4 cut(s) 132, 529, 604, 613
AluBI AGCT 6 cut(s) 148, 155, 188, 319, 881, 916
AluI AGCT 6 cut(s) 148, 155, 188, 319, 881, 916
Alw26I GTCTC 2 cut(s) 738, 841
AlwI GGATC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 2 cut(s) 14, 900
ApeKI GCWGC 2 cut(s) 152, 316
Asp700I GAANNNNTTC 1 cut(s) 114
AsuHPI GGTGA 4 cut(s) 58, 689, 704, 775
AxyI CCTNAGG 1 cut(s) 516
BaeGI GKGCMC 1 cut(s) 549
BaeI ACNNNNGTAYC 2 cut(s) 396, 429
BanII GRGCYC 1 cut(s) 613
BbsI GAAGAC 2 cut(s) 117, 708
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 164, 328
BccI CCATC 2 cut(s) 668, 683
BceAI ACGGC 1 cut(s) 866
BcgI CGANNNNNNTGC 4 cut(s) 45, 79, 349, 383
BciT130I CCWGG 4 cut(s) 134, 531, 606, 615
BcoDI GTCTC 2 cut(s) 738, 841
BfmI CTRYAG 1 cut(s) 483
BglI GCCNNNNNGGC 1 cut(s) 908
BglII AGATCT 1 cut(s) 207
BisI GCNGC 3 cut(s) 153, 317, 667
BlsI GCNGC 3 cut(s) 154, 318, 668
Bme1390I CCNGG 4 cut(s) 134, 531, 606, 615
BmiI GGNNCC 1 cut(s) 610
BmrFI CCNGG 4 cut(s) 134, 531, 606, 615
BmrI ACTGGG 1 cut(s) 503
BmuI ACTGGG 1 cut(s) 503
BpiI GAAGAC 2 cut(s) 117, 708
BpmI CTGGAG 1 cut(s) 552
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 616
Bsa29I ATCGAT 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 841
BsaJI CCNNGG 4 cut(s) 453, 613, 787, 804
Bse118I RCCGGY 1 cut(s) 902
Bse1I ACTGG 3 cut(s) 89, 509, 848
Bse21I CCTNAGG 1 cut(s) 516
BseBI CCWGG 4 cut(s) 134, 531, 606, 615
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 4 cut(s) 453, 613, 787, 804
BseMII CTCAG 2 cut(s) 170, 180
BseNI ACTGG 3 cut(s) 89, 509, 848
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 2 cut(s) 164, 328
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 16, 902
BshVI ATCGAT 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 369
BsiSI CCGG 1 cut(s) 903
BslFI GGGAC 1 cut(s) 879
BsmAI GTCTC 2 cut(s) 738, 841
BsmFI GGGAC 1 cut(s) 879
BsmI GAATGC 1 cut(s) 362
BsnI GGCC 2 cut(s) 16, 902
Bso31I GGTCTC 1 cut(s) 841
Bsp1286I GDGCHC 2 cut(s) 549, 613
Bsp143I GATC 6 cut(s) 30, 48, 66, 207, 366, 780
BspACI CCGC 3 cut(s) 263, 269, 666
BspANI GGCC 2 cut(s) 16, 902
BspCNI CTCAG 2 cut(s) 169, 181
BspDI ATCGAT 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 610
BspPI GGATC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 841
BsrFI RCCGGY 1 cut(s) 902
BsrI ACTGG 3 cut(s) 89, 509, 848
BssAI RCCGGY 1 cut(s) 902
BssECI CCNNGG 4 cut(s) 453, 613, 787, 804
BssMI GATC 6 cut(s) 30, 48, 66, 207, 366, 780
BssT1I CCWWGG 3 cut(s) 453, 787, 804
Bst2UI CCWGG 4 cut(s) 134, 531, 606, 615
Bst4CI ACNGT 2 cut(s) 40, 97
Bst6I CTCTTC 2 cut(s) 176, 884
BstAPI GCANNNNNTGC 1 cut(s) 494
BstC8I GCNNGC 5 cut(s) 150, 375, 490, 825, 904
BstDEI CTNAG 3 cut(s) 156, 189, 516
BstKTI GATC 6 cut(s) 33, 51, 69, 210, 369, 783
BstMAI GTCTC 2 cut(s) 738, 841
BstMBI GATC 6 cut(s) 30, 48, 66, 207, 366, 780
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 2 cut(s) 494, 908
BstNI CCWGG 4 cut(s) 134, 531, 606, 615
BstNSI RCATGY 2 cut(s) 492, 827
BstSCI CCNGG 4 cut(s) 132, 529, 604, 613
BstSFI CTRYAG 1 cut(s) 483
BstSLI GKGCMC 1 cut(s) 549
BstV1I GCAGC 2 cut(s) 164, 328
BstV2I GAAGAC 2 cut(s) 117, 708
BstX2I RGATCY 2 cut(s) 30, 207
BstYI RGATCY 2 cut(s) 30, 207
Bsu15I ATCGAT 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 516
BsuRI GGCC 2 cut(s) 16, 902
BsuTUI ATCGAT 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 3 cut(s) 45, 96, 499
Cac8I GCNNGC 5 cut(s) 150, 375, 490, 825, 904
CaiI CAGNNNCTG 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 902
ClaI ATCGAT 1 cut(s) 65
Csp6I GTAC 2 cut(s) 628, 894
CviAII CATG 4 cut(s) 489, 619, 652, 824
CviQI GTAC 2 cut(s) 628, 894
DdeI CTNAG 3 cut(s) 156, 189, 516
DpnI GATC 6 cut(s) 32, 50, 68, 209, 368, 782
DpnII GATC 6 cut(s) 30, 48, 66, 207, 366, 780
Eam1104I CTCTTC 2 cut(s) 176, 884
EarI CTCTTC 2 cut(s) 176, 884
EciI GGCGGA 2 cut(s) 278, 284
Eco130I CCWWGG 3 cut(s) 453, 787, 804
Eco24I GRGCYC 1 cut(s) 613
Eco31I GGTCTC 1 cut(s) 841
Eco57I CTGAAG 2 cut(s) 275, 357
Eco81I CCTNAGG 1 cut(s) 516
EcoRII CCWGG 4 cut(s) 132, 529, 604, 613
EcoT14I CCWWGG 3 cut(s) 453, 787, 804
EcoT38I GRGCYC 1 cut(s) 613
ErhI CCWWGG 3 cut(s) 453, 787, 804
FaeI CATG 4 cut(s) 492, 622, 655, 827
FaqI GGGAC 1 cut(s) 879
FatI CATG 4 cut(s) 488, 618, 651, 823
Fnu4HI GCNGC 3 cut(s) 153, 317, 667
FriOI GRGCYC 1 cut(s) 613
Fsp4HI GCNGC 3 cut(s) 153, 317, 667
GluI GCNGC 3 cut(s) 153, 317, 667
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 2 cut(s) 16, 902
HapII CCGG 1 cut(s) 903
Hin1II CATG 4 cut(s) 492, 622, 655, 827
HinfI GANTC 4 cut(s) 332, 449, 526, 867
HpaII CCGG 1 cut(s) 903
HphI GGTGA 4 cut(s) 58, 689, 704, 775
Hpy188I TCNGA 7 cut(s) 73, 214, 222, 255, 337, 355, 403
Hpy188III TCNNGA 2 cut(s) 383, 633
HpyAV CCTTC 6 cut(s) 100, 130, 253, 332, 516, 726
HpyCH4III ACNGT 2 cut(s) 40, 97
HpyCH4V TGCA 7 cut(s) 163, 316, 348, 360, 471, 492, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 908
HpyF3I CTNAG 3 cut(s) 156, 189, 516
Hsp92II CATG 4 cut(s) 492, 622, 655, 827
KroI GCCGGC 1 cut(s) 902
KroNI GCCGGC 1 cut(s) 904
Kzo9I GATC 6 cut(s) 30, 48, 66, 207, 366, 780
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 2 cut(s) 164, 328
MaeIII GTNAC 2 cut(s) 91, 846
MalI GATC 6 cut(s) 32, 50, 68, 209, 368, 782
MboI GATC 6 cut(s) 30, 48, 66, 207, 366, 780
MflI RGATCY 2 cut(s) 30, 207
MhlI GDGCHC 2 cut(s) 549, 613
MluCI AATT 7 cut(s) 18, 171, 349, 460, 713, 725, 792
MlyI GAGTC 2 cut(s) 520, 861
MroNI GCCGGC 1 cut(s) 902
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 3 cut(s) 126, 459, 644
MslI CAYNNNNRTG 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 1 cut(s) 903
MspR9I CCNGG 4 cut(s) 134, 531, 606, 615
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 4 cut(s) 134, 531, 606, 615
MwoI GCNNNNNNNGC 2 cut(s) 494, 908
NaeI GCCGGC 1 cut(s) 904
NdeII GATC 6 cut(s) 30, 48, 66, 207, 366, 780
NgoMIV GCCGGC 1 cut(s) 902
NlaIII CATG 4 cut(s) 492, 622, 655, 827
NlaIV GGNNCC 1 cut(s) 610
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 2 cut(s) 492, 827
PaeI GCATGC 2 cut(s) 492, 827
PctI GAATGC 1 cut(s) 362
PdiI GCCGGC 1 cut(s) 904
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 332, 449
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 3 cut(s) 154, 318, 668
Ple19I CGATCG 1 cut(s) 369
PleI GAGTC 2 cut(s) 520, 861
PpsI GAGTC 2 cut(s) 520, 861
PsiI TTATAA 1 cut(s) 797
Psp6I CCWGG 4 cut(s) 132, 529, 604, 613
PspGI CCWGG 4 cut(s) 132, 529, 604, 613
PspN4I GGNNCC 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 2 cut(s) 30, 207
PvuI CGATCG 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 2 cut(s) 629, 895
RsaNI GTAC 2 cut(s) 628, 894
RseI CAYNNNNRTG 1 cut(s) 623
SaqAI TTAA 3 cut(s) 126, 459, 644
SatI GCNGC 3 cut(s) 153, 317, 667
Sau3AI GATC 6 cut(s) 30, 48, 66, 207, 366, 780
SchI GAGTC 2 cut(s) 520, 861
ScrFI CCNGG 4 cut(s) 134, 531, 606, 615
SduI GDGCHC 2 cut(s) 549, 613
SfcI CTRYAG 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
SphI GCATGC 2 cut(s) 492, 827
Sse9I AATT 7 cut(s) 18, 171, 349, 460, 713, 725, 792
SsiI CCGC 3 cut(s) 263, 269, 666
SspI AATATT 1 cut(s) 582
StyD4I CCNGG 4 cut(s) 132, 529, 604, 613
StyI CCWWGG 3 cut(s) 453, 787, 804
TaaI ACNGT 2 cut(s) 40, 97
TaqI TCGA 3 cut(s) 65, 195, 369
TasI AATT 7 cut(s) 18, 171, 349, 460, 713, 725, 792
TatI WGTACW 2 cut(s) 627, 893
TauI GCSGC 1 cut(s) 669
TfiI GAWTC 2 cut(s) 332, 449
Tru1I TTAA 3 cut(s) 126, 459, 644
Tru9I TTAA 3 cut(s) 126, 459, 644
TscAI CASTG 3 cut(s) 45, 96, 499
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 152, 316
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 112, 635, 668
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 3 cut(s) 45, 96, 499
XceI RCATGY 2 cut(s) 492, 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.