FvH4_1g07000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014440
Physical Location & Seq
Reverse (-)
3693516 .. 3695833
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07000.t1

Sequence Viewer

Length: 918 bp
ATGGCGAAGCTGAGACCAATCAAAGTTTCAATCTTTACCGTTCTGTTGATCTCGGCATTGGTGTCGATGTCGGAGTGCGCGAAGAAGCCGGCGAGTGTGGCGAGGAAGGAGGACATTCCCTTCATCAAATGCCAAGTGTGTGAGAAGCTGGCAGCTCAGTTGCACCACCAAGTTGAGAAGAAGAGAGCTGAGATCCAACCCAAGAAGATCTCGGAGTATCAGATCATTGAGATTACGGAGAATGTTTGCAATTTGAAGAAGGCGGAAGCGGATTGGATTTTGCTGATTGATATAGTTGAGCAAGGAGATAAGTTGCAGCTGGTGGAACAAGAATCTGAAGGACAGTGTAATTCGGAATGCAAGACGATCGAGCGAGCGTGTCAGGAGGTTCTGGGGTATTCTGATACCGATGTTGCTGAATATCTATACAAATCCAAACCTGACATTGGTTCCTTTGTTAATTATCTATGCAAAGACCTGTCTACAGCGTGCAGTATCAAGCCTCCACCAGTTCCTAAGGATAGGACTCCTGGAGAAGTTTTTGTGCCCAAGTCATCGAAAGAGGCTGAAATGGAAAAGATATTAAAATCTATGGAGGGTATGCCAGGAGCCCCAGGCATGAAAATGTACTCCAGGGATGATTTGATGAACATGAAGAACTTTGGCGGGGAAGATGGTGAAGAGGAAGTTGATGACGACGACGAAGCTCAGTTCCCCTCAAAATTGGGAAAGGCTTTGAGAGACAAAGAAAGTACAAAGAGTGATCTTAAACAGAAGATCACCCATGGAATTGTAAAGACCAAGGACACACTAAAGAAGCATGCAAACAAAGTCTCCAACTGGTTGCGGCAAAGGTGGAGGGGACTTAAAAAGGCAGCTTCGAAGAAGAGTACGAAGGCCGGCAAGGCAGAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

34.22

Weight (kDa)

8.55

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29520
fragaria_vesca FvH4_1g07000 FvH4_1g07000
malus_domestica MD02G1074400.v1.1 MD15G1203900.v1.1
prunus_persica Prupe.7G213500_v2.0.a1
pyrus_communis pycom02g05880
rosa_chinensis RchiOBHm_Chr2g0092951
rosa_laevigata RLG00000016352
rosa_multiflora Rmu_sc0000965.1_g000016
rosa_roxburghii Rroxscaffold_2G00148680
rosa_rugosa Rorug02G0030600
rosa_samantha Rh2AG076600 Rh2BG077900 Rh2CG080100 Rh2DG075200
rosa_wichuraiana Rw2G006960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 482
AccII CGCG 1 cut(s) 80
AciI CCGC 4 cut(s) 263, 269, 666, 847
AclWI GGATC 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 3 cut(s) 629, 754, 892
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 2 cut(s) 30, 256
AjnI CCWGG 4 cut(s) 529, 604, 613, 632
AjuI GAANNNNNNNTTGG 2 cut(s) 10, 42
AluBI AGCT 8 cut(s) 10, 148, 155, 188, 319, 707, 878, 913
AluI AGCT 8 cut(s) 10, 148, 155, 188, 319, 707, 878, 913
Alw26I GTCTC 3 cut(s) 7, 735, 838
AlwI GGATC 1 cut(s) 187
AoxI GGCC 1 cut(s) 897
ApeKI GCWGC 3 cut(s) 152, 316, 875
AspLEI GCGC 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 689, 772
AsuII TTCGAA 1 cut(s) 881
AxyI CCTNAGG 1 cut(s) 516
BaeGI GKGCMC 1 cut(s) 549
BaeI ACNNNNGTAYC 2 cut(s) 396, 429
BanII GRGCYC 1 cut(s) 613
BbvI GCAGC 3 cut(s) 164, 328, 887
BccI CCATC 1 cut(s) 668
BcgI CGANNNNNNTGC 4 cut(s) 45, 79, 349, 383
BciT130I CCWGG 4 cut(s) 531, 606, 615, 634
BcoDI GTCTC 3 cut(s) 7, 735, 838
BfmI CTRYAG 1 cut(s) 483
BglI GCCNNNNNGGC 1 cut(s) 905
BglII AGATCT 1 cut(s) 207
BisI GCNGC 4 cut(s) 153, 317, 848, 876
BlsI GCNGC 4 cut(s) 154, 318, 849, 877
Bme1390I CCNGG 4 cut(s) 531, 606, 615, 634
BmiI GGNNCC 2 cut(s) 451, 610
BmrFI CCNGG 4 cut(s) 531, 606, 615, 634
BpmI CTGGAG 2 cut(s) 552, 616
Bpu14I TTCGAA 1 cut(s) 881
BsaI GGTCTC 1 cut(s) 7
BsaJI CCNNGG 4 cut(s) 613, 633, 784, 801
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse118I RCCGGY 2 cut(s) 88, 899
Bse1I ACTGG 2 cut(s) 509, 845
Bse21I CCTNAGG 1 cut(s) 516
BseBI CCWGG 4 cut(s) 531, 606, 615, 634
BseDI CCNNGG 4 cut(s) 613, 633, 784, 801
BseGI GGATG 1 cut(s) 643
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 170, 180, 722
BseNI ACTGG 2 cut(s) 509, 845
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 3 cut(s) 164, 328, 887
BsgI GTGCAG 1 cut(s) 511
Bsh1236I CGCG 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 1 cut(s) 899
BsiEI CGRYCG 1 cut(s) 369
BsiSI CCGG 2 cut(s) 89, 900
BslFI GGGAC 1 cut(s) 876
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 3 cut(s) 7, 735, 838
BsmFI GGGAC 1 cut(s) 876
BsmI GAATGC 1 cut(s) 362
BsnI GGCC 1 cut(s) 899
Bso31I GGTCTC 1 cut(s) 7
Bsp119I TTCGAA 1 cut(s) 881
Bsp1286I GDGCHC 2 cut(s) 549, 613
Bsp143I GATC 7 cut(s) 48, 192, 207, 222, 366, 763, 777
Bsp19I CCATGG 1 cut(s) 784
BspACI CCGC 4 cut(s) 263, 269, 666, 847
BspANI GGCC 1 cut(s) 899
BspCNI CTCAG 3 cut(s) 169, 181, 721
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 2 cut(s) 451, 610
BspPI GGATC 1 cut(s) 187
BspT104I TTCGAA 1 cut(s) 881
BspTNI GGTCTC 1 cut(s) 7
BsrFI RCCGGY 2 cut(s) 88, 899
BsrI ACTGG 2 cut(s) 509, 845
BssAI RCCGGY 2 cut(s) 88, 899
BssECI CCNNGG 4 cut(s) 613, 633, 784, 801
BssMI GATC 7 cut(s) 48, 192, 207, 222, 366, 763, 777
BssT1I CCWWGG 2 cut(s) 784, 801
Bst2UI CCWGG 4 cut(s) 531, 606, 615, 634
Bst4CI ACNGT 2 cut(s) 40, 345
Bst6I CTCTTC 3 cut(s) 176, 675, 881
BstBI TTCGAA 1 cut(s) 881
BstC8I GCNNGC 6 cut(s) 90, 150, 375, 490, 822, 901
BstDEI CTNAG 5 cut(s) 11, 156, 189, 516, 708
BstDSI CCRYGG 1 cut(s) 784
BstF5I GGATG 1 cut(s) 643
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 7 cut(s) 51, 195, 210, 225, 369, 766, 780
BstMAI GTCTC 3 cut(s) 7, 735, 838
BstMBI GATC 7 cut(s) 48, 192, 207, 222, 366, 763, 777
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 2 cut(s) 98, 905
BstNI CCWGG 4 cut(s) 531, 606, 615, 634
BstNSI RCATGY 1 cut(s) 824
BstSCI CCNGG 4 cut(s) 529, 604, 613, 632
BstSFI CTRYAG 1 cut(s) 483
BstSLI GKGCMC 1 cut(s) 549
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 164, 328, 887
BstX2I RGATCY 2 cut(s) 192, 207
BstYI RGATCY 2 cut(s) 192, 207
Bsu36I CCTNAGG 1 cut(s) 516
BsuRI GGCC 1 cut(s) 899
BtgI CCRYGG 1 cut(s) 784
BtsCI GGATG 1 cut(s) 643
BtsIMutI CAGTG 1 cut(s) 350
Cac8I GCNNGC 6 cut(s) 90, 150, 375, 490, 822, 901
CfoI GCGC 1 cut(s) 80
Cfr10I RCCGGY 2 cut(s) 88, 899
Csp6I GTAC 3 cut(s) 628, 753, 891
CviAII CATG 4 cut(s) 619, 652, 785, 821
CviQI GTAC 3 cut(s) 628, 753, 891
DdeI CTNAG 5 cut(s) 11, 156, 189, 516, 708
DpnI GATC 7 cut(s) 50, 194, 209, 224, 368, 765, 779
DpnII GATC 7 cut(s) 48, 192, 207, 222, 366, 763, 777
Eam1104I CTCTTC 3 cut(s) 176, 675, 881
EarI CTCTTC 3 cut(s) 176, 675, 881
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 2 cut(s) 784, 801
Eco24I GRGCYC 1 cut(s) 613
Eco31I GGTCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 357
Eco81I CCTNAGG 1 cut(s) 516
EcoRII CCWGG 4 cut(s) 529, 604, 613, 632
EcoT14I CCWWGG 2 cut(s) 784, 801
EcoT38I GRGCYC 1 cut(s) 613
ErhI CCWWGG 2 cut(s) 784, 801
FaeI CATG 4 cut(s) 622, 655, 788, 824
FaiI YATR 9 cut(s) 293, 427, 469, 593, 602, 620, 653, 786, 822
FaqI GGGAC 1 cut(s) 876
FatI CATG 4 cut(s) 618, 651, 784, 820
FauI CCCGC 1 cut(s) 659
FblI GTMKAC 1 cut(s) 482
Fnu4HI GCNGC 4 cut(s) 153, 317, 848, 876
FokI GGATG 1 cut(s) 650
FriOI GRGCYC 1 cut(s) 613
Fsp4HI GCNGC 4 cut(s) 153, 317, 848, 876
GlaI GCGC 1 cut(s) 79
GluI GCNGC 4 cut(s) 153, 317, 848, 876
GsuI CTGGAG 2 cut(s) 552, 616
HaeIII GGCC 1 cut(s) 899
HapII CCGG 2 cut(s) 89, 900
HhaI GCGC 1 cut(s) 80
Hin1II CATG 4 cut(s) 622, 655, 788, 824
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 2 cut(s) 332, 526
HpaII CCGG 2 cut(s) 89, 900
HphI GGTGA 2 cut(s) 689, 772
Hpy166II GTNNAC 1 cut(s) 483
Hpy188I TCNGA 6 cut(s) 73, 214, 222, 337, 355, 403
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 1 cut(s) 483
Hpy99I CGWCG 2 cut(s) 701, 704
HpyAV CCTTC 5 cut(s) 100, 130, 253, 332, 889
HpyCH4III ACNGT 2 cut(s) 40, 345
HpyCH4V TGCA 7 cut(s) 163, 249, 316, 360, 471, 492, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 905
HpyF3I CTNAG 5 cut(s) 11, 156, 189, 516, 708
Hsp92II CATG 4 cut(s) 622, 655, 788, 824
HspAI GCGC 1 cut(s) 78
KroI GCCGGC 2 cut(s) 88, 899
KroNI GCCGGC 2 cut(s) 90, 901
Kzo9I GATC 7 cut(s) 48, 192, 207, 222, 366, 763, 777
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 3 cut(s) 164, 328, 887
MalI GATC 7 cut(s) 50, 194, 209, 224, 368, 765, 779
MboI GATC 7 cut(s) 48, 192, 207, 222, 366, 763, 777
MflI RGATCY 2 cut(s) 192, 207
MhlI GDGCHC 2 cut(s) 549, 613
MluCI AATT 5 cut(s) 250, 349, 460, 722, 789
MlyI GAGTC 1 cut(s) 520
MmeI TCCRAC 3 cut(s) 51, 220, 861
MnlI CCTC 9 cut(s) 96, 103, 379, 513, 556, 589, 676, 727, 852
MroNI GCCGGC 2 cut(s) 88, 899
MseI TTAA 4 cut(s) 459, 584, 768, 867
MslI CAYNNNNRTG 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 2 cut(s) 89, 900
MspR9I CCNGG 4 cut(s) 531, 606, 615, 634
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 4 cut(s) 531, 606, 615, 634
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 98, 905
NaeI GCCGGC 2 cut(s) 90, 901
NcoI CCATGG 1 cut(s) 784
NdeII GATC 7 cut(s) 48, 192, 207, 222, 366, 763, 777
NgoMIV GCCGGC 2 cut(s) 88, 899
NlaIII CATG 4 cut(s) 622, 655, 788, 824
NlaIV GGNNCC 2 cut(s) 451, 610
NmeAIII GCCGAG 1 cut(s) 32
NspI RCATGY 1 cut(s) 824
NspV TTCGAA 1 cut(s) 881
PaeI GCATGC 1 cut(s) 824
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PctI GAATGC 1 cut(s) 362
PdiI GCCGGC 2 cut(s) 90, 901
PfeI GAWTC 1 cut(s) 332
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 4 cut(s) 154, 318, 849, 877
Ple19I CGATCG 1 cut(s) 369
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp6I CCWGG 4 cut(s) 529, 604, 613, 632
PspGI CCWGG 4 cut(s) 529, 604, 613, 632
PspN4I GGNNCC 2 cut(s) 451, 610
PsuI RGATCY 2 cut(s) 192, 207
PvuI CGATCG 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 3 cut(s) 629, 754, 892
RsaNI GTAC 3 cut(s) 628, 753, 891
RseI CAYNNNNRTG 1 cut(s) 623
SaqAI TTAA 4 cut(s) 459, 584, 768, 867
SatI GCNGC 4 cut(s) 153, 317, 848, 876
Sau3AI GATC 7 cut(s) 48, 192, 207, 222, 366, 763, 777
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 4 cut(s) 531, 606, 615, 634
SduI GDGCHC 2 cut(s) 549, 613
SfcI CTRYAG 1 cut(s) 483
SfuI TTCGAA 1 cut(s) 881
SmiMI CAYNNNNRTG 1 cut(s) 623
SphI GCATGC 1 cut(s) 824
Sse9I AATT 5 cut(s) 250, 349, 460, 722, 789
SsiI CCGC 4 cut(s) 263, 269, 666, 847
StyD4I CCNGG 4 cut(s) 529, 604, 613, 632
StyI CCWWGG 2 cut(s) 784, 801
TaaI ACNGT 2 cut(s) 40, 345
TaqI TCGA 4 cut(s) 65, 369, 557, 881
TasI AATT 5 cut(s) 250, 349, 460, 722, 789
TatI WGTACW 2 cut(s) 627, 752
TauI GCSGC 1 cut(s) 850
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 4 cut(s) 459, 584, 768, 867
Tru9I TTAA 4 cut(s) 459, 584, 768, 867
TscAI CASTG 1 cut(s) 350
TseI GCWGC 3 cut(s) 152, 316, 875
TspDTI ATGAA 4 cut(s) 112, 635, 662, 668
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 350
XceI RCATGY 1 cut(s) 824
XmiI GTMKAC 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.