Rh2CG080100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014440
Physical Location & Seq
Reverse (-)
6553408 .. 6556357
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG080100.1

Sequence Viewer

Length: 924 bp
ATGGCGAAAGTGAGGCCAATTCAAGTTTGGATCTTTACAGTGGTGGTGGTGATCTCGGCATTGGTATCGATCTCCGAGTGTGCGAAGAAGCCAGTGACTGTGGCGAGGAAGGAAGACATTCCCTTCATCAAATGCCAGGTCTGTGAGAAGCTCGCAGCTCAGTTGCACCACCAAGTTGAGAAGAAGAGAGCTGAGGTCGAACCCAAGAAGATCTCGGAGTATCAGATTATTGAGATTACGGAGAATGTTTGTAATCTGAAGAAGGCGGAGGCGGATTGGATTTTGCTGATTGACATAGTTGAACAAGGAGATAAGTTGCAGCTGGTGGAACAAGAATCTGAAGGACAATGCAATTCCGAATGCAAGACGATCGAGCGAGCCTGTCAGGAGGTTCTGGGGTATTCTGATACTGATGTTGCTGAATATCTATACAAATCCAAACCCGACATTGATTCCTTGGTTAATTATCTATGCAAAGACCTTACTACAGCATGCAGTGCCAAGCCTCCCCCAGTTCCTAAGGGTAGGACTCCTGGAGAAGTTTTTGTGCCCAAGTCATCAAAAGAGGCTGAAATGGAAAAAATATTGAAATCTATGGAGGGTATGCCAGGAGCCCCAGGCATGAAAATGTACTCAAGAGATGATTTAATGAACATGAAAAACTTTGGCGGCGAAGATGGTGATGATGAAGATGATGATGACGAAGACGACACTCAATTTCCCTCGAAATTGGGAAGGGCTTTGAGAGACAAAGAAAATACAAAGAGTGATTTGAAACAGAAGATCACCCATGGAATTATAAAGACCAAGGACACACTAAAGAAGCATGCAAACAAGGTCTCTAACTGGTTACGGCAAAGGTGGAGGGGACTCAAAAAGACAGCTTCAAAGAAGAGTACAAAGGCCGGCAAGGCAGAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.56

Weight (kDa)

7.48

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29520
fragaria_vesca FvH4_1g07000 FvH4_1g07000
malus_domestica MD02G1074400.v1.1 MD15G1203900.v1.1
prunus_persica Prupe.7G213500_v2.0.a1
pyrus_communis pycom02g05880
rosa_chinensis RchiOBHm_Chr2g0092951
rosa_laevigata RLG00000016352
rosa_multiflora Rmu_sc0000965.1_g000016
rosa_roxburghii Rroxscaffold_2G00148680
rosa_rugosa Rorug02G0030600
rosa_samantha Rh2AG076600 Rh2BG077900 Rh2CG080100 Rh2DG075200
rosa_wichuraiana Rw2G006960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 800
AciI CCGC 3 cut(s) 266, 272, 669
AclWI GGATC 1 cut(s) 38
AcuI CTGAAG 2 cut(s) 278, 360
AfaI GTAC 2 cut(s) 632, 898
AgsI TTSAA 5 cut(s) 23, 302, 589, 775, 888
AjnI CCWGG 4 cut(s) 135, 532, 607, 616
AluBI AGCT 6 cut(s) 151, 158, 191, 322, 884, 919
AluI AGCT 6 cut(s) 151, 158, 191, 322, 884, 919
Alw26I GTCTC 2 cut(s) 741, 844
AlwI GGATC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 2 cut(s) 14, 903
ApeKI GCWGC 2 cut(s) 155, 319
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
Asp700I GAANNNNTTC 1 cut(s) 117
AsuHPI GGTGA 3 cut(s) 61, 692, 778
AxyI CCTNAGG 1 cut(s) 519
BaeGI GKGCMC 1 cut(s) 552
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BanII GRGCYC 1 cut(s) 616
BbsI GAAGAC 2 cut(s) 120, 711
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 167, 331
BccI CCATC 1 cut(s) 671
BceAI ACGGC 1 cut(s) 869
BcgI CGANNNNNNTGC 4 cut(s) 48, 82, 352, 386
BciT130I CCWGG 4 cut(s) 137, 534, 609, 618
BcoDI GTCTC 2 cut(s) 741, 844
BfmI CTRYAG 1 cut(s) 486
BglI GCCNNNNNGGC 1 cut(s) 911
BglII AGATCT 1 cut(s) 210
BisI GCNGC 3 cut(s) 156, 320, 670
BlsI GCNGC 3 cut(s) 157, 321, 671
Bme1390I CCNGG 4 cut(s) 137, 534, 609, 618
BmiI GGNNCC 1 cut(s) 613
BmrFI CCNGG 4 cut(s) 137, 534, 609, 618
BmrI ACTGGG 1 cut(s) 506
BmuI ACTGGG 1 cut(s) 506
BpiI GAAGAC 2 cut(s) 120, 711
BpmI CTGGAG 1 cut(s) 555
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 619
Bsa29I ATCGAT 1 cut(s) 68
BsaI GGTCTC 1 cut(s) 844
BsaJI CCNNGG 4 cut(s) 456, 616, 790, 807
Bse118I RCCGGY 1 cut(s) 905
Bse1I ACTGG 3 cut(s) 92, 512, 851
Bse21I CCTNAGG 1 cut(s) 519
BseBI CCWGG 4 cut(s) 137, 534, 609, 618
BseCI ATCGAT 1 cut(s) 68
BseDI CCNNGG 4 cut(s) 456, 616, 790, 807
BseMII CTCAG 2 cut(s) 173, 183
BseNI ACTGG 3 cut(s) 92, 512, 851
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 2 cut(s) 167, 331
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 2 cut(s) 16, 905
BshVI ATCGAT 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 372
BsiSI CCGG 1 cut(s) 906
BslFI GGGAC 1 cut(s) 882
BsmAI GTCTC 2 cut(s) 741, 844
BsmFI GGGAC 1 cut(s) 882
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 2 cut(s) 16, 905
Bso31I GGTCTC 1 cut(s) 844
Bsp1286I GDGCHC 2 cut(s) 552, 616
Bsp143I GATC 6 cut(s) 30, 51, 69, 210, 369, 783
Bsp19I CCATGG 1 cut(s) 790
BspACI CCGC 3 cut(s) 266, 272, 669
BspANI GGCC 2 cut(s) 16, 905
BspCNI CTCAG 2 cut(s) 172, 184
BspDI ATCGAT 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 613
BspPI GGATC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 844
BsrFI RCCGGY 1 cut(s) 905
BsrI ACTGG 3 cut(s) 92, 512, 851
BssAI RCCGGY 1 cut(s) 905
BssECI CCNNGG 4 cut(s) 456, 616, 790, 807
BssMI GATC 6 cut(s) 30, 51, 69, 210, 369, 783
BssT1I CCWWGG 3 cut(s) 456, 790, 807
Bst2UI CCWGG 4 cut(s) 137, 534, 609, 618
Bst4CI ACNGT 2 cut(s) 40, 100
Bst6I CTCTTC 2 cut(s) 179, 887
BstAPI GCANNNNNTGC 1 cut(s) 497
BstC8I GCNNGC 5 cut(s) 153, 378, 493, 828, 907
BstDEI CTNAG 3 cut(s) 159, 192, 519
BstDSI CCRYGG 1 cut(s) 790
BstKTI GATC 6 cut(s) 33, 54, 72, 213, 372, 786
BstMAI GTCTC 2 cut(s) 741, 844
BstMBI GATC 6 cut(s) 30, 51, 69, 210, 369, 783
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 2 cut(s) 497, 911
BstNI CCWGG 4 cut(s) 137, 534, 609, 618
BstNSI RCATGY 2 cut(s) 495, 830
BstSCI CCNGG 4 cut(s) 135, 532, 607, 616
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 552
BstV1I GCAGC 2 cut(s) 167, 331
BstV2I GAAGAC 2 cut(s) 120, 711
BstX2I RGATCY 2 cut(s) 30, 210
BstYI RGATCY 2 cut(s) 30, 210
Bsu15I ATCGAT 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 2 cut(s) 16, 905
BsuTUI ATCGAT 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 790
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 3 cut(s) 45, 99, 502
Cac8I GCNNGC 5 cut(s) 153, 378, 493, 828, 907
CaiI CAGNNNCTG 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 905
ClaI ATCGAT 1 cut(s) 68
Csp6I GTAC 2 cut(s) 631, 897
CviAII CATG 5 cut(s) 492, 622, 655, 791, 827
CviQI GTAC 2 cut(s) 631, 897
DdeI CTNAG 3 cut(s) 159, 192, 519
DpnI GATC 6 cut(s) 32, 53, 71, 212, 371, 785
DpnII GATC 6 cut(s) 30, 51, 69, 210, 369, 783
Eam1104I CTCTTC 2 cut(s) 179, 887
EarI CTCTTC 2 cut(s) 179, 887
EciI GGCGGA 2 cut(s) 281, 287
Eco130I CCWWGG 3 cut(s) 456, 790, 807
Eco24I GRGCYC 1 cut(s) 616
Eco31I GGTCTC 1 cut(s) 844
Eco57I CTGAAG 2 cut(s) 278, 360
Eco81I CCTNAGG 1 cut(s) 519
EcoRII CCWGG 4 cut(s) 135, 532, 607, 616
EcoT14I CCWWGG 3 cut(s) 456, 790, 807
EcoT38I GRGCYC 1 cut(s) 616
ErhI CCWWGG 3 cut(s) 456, 790, 807
FaeI CATG 5 cut(s) 495, 625, 658, 794, 830
FaqI GGGAC 1 cut(s) 882
FatI CATG 5 cut(s) 491, 621, 654, 790, 826
Fnu4HI GCNGC 3 cut(s) 156, 320, 670
FriOI GRGCYC 1 cut(s) 616
Fsp4HI GCNGC 3 cut(s) 156, 320, 670
GluI GCNGC 3 cut(s) 156, 320, 670
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 2 cut(s) 16, 905
HapII CCGG 1 cut(s) 906
Hin1II CATG 5 cut(s) 495, 625, 658, 794, 830
HinfI GANTC 4 cut(s) 335, 452, 529, 870
HpaII CCGG 1 cut(s) 906
HphI GGTGA 3 cut(s) 61, 692, 778
Hpy188I TCNGA 7 cut(s) 76, 217, 225, 258, 340, 358, 406
Hpy188III TCNNGA 2 cut(s) 386, 636
HpyAV CCTTC 5 cut(s) 103, 133, 256, 335, 729
HpyCH4III ACNGT 2 cut(s) 40, 100
HpyCH4V TGCA 7 cut(s) 166, 319, 351, 363, 474, 495, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 497, 911
HpyF3I CTNAG 3 cut(s) 159, 192, 519
Hsp92II CATG 5 cut(s) 495, 625, 658, 794, 830
KroI GCCGGC 1 cut(s) 905
KroNI GCCGGC 1 cut(s) 907
Kzo9I GATC 6 cut(s) 30, 51, 69, 210, 369, 783
LmnI GCTCC 1 cut(s) 611
Lsp1109I GCAGC 2 cut(s) 167, 331
MaeIII GTNAC 2 cut(s) 94, 849
MalI GATC 6 cut(s) 32, 53, 71, 212, 371, 785
MboI GATC 6 cut(s) 30, 51, 69, 210, 369, 783
MflI RGATCY 2 cut(s) 30, 210
MhlI GDGCHC 2 cut(s) 552, 616
MluCI AATT 6 cut(s) 18, 352, 463, 716, 728, 795
MlyI GAGTC 2 cut(s) 523, 864
MroNI GCCGGC 1 cut(s) 905
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 2 cut(s) 462, 647
MslI CAYNNNNRTG 1 cut(s) 626
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 1 cut(s) 906
MspR9I CCNGG 4 cut(s) 137, 534, 609, 618
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 4 cut(s) 137, 534, 609, 618
MwoI GCNNNNNNNGC 2 cut(s) 497, 911
NaeI GCCGGC 1 cut(s) 907
NcoI CCATGG 1 cut(s) 790
NdeII GATC 6 cut(s) 30, 51, 69, 210, 369, 783
NgoMIV GCCGGC 1 cut(s) 905
NlaIII CATG 5 cut(s) 495, 625, 658, 794, 830
NlaIV GGNNCC 1 cut(s) 613
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 2 cut(s) 495, 830
PaeI GCATGC 2 cut(s) 495, 830
PctI GAATGC 1 cut(s) 365
PdiI GCCGGC 1 cut(s) 907
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 335, 452
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 3 cut(s) 157, 321, 671
Ple19I CGATCG 1 cut(s) 372
PleI GAGTC 2 cut(s) 523, 864
PpsI GAGTC 2 cut(s) 523, 864
PsiI TTATAA 1 cut(s) 800
Psp6I CCWGG 4 cut(s) 135, 532, 607, 616
PspGI CCWGG 4 cut(s) 135, 532, 607, 616
PspN4I GGNNCC 1 cut(s) 613
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 30, 210
PvuI CGATCG 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 322
RsaI GTAC 2 cut(s) 632, 898
RsaNI GTAC 2 cut(s) 631, 897
RseI CAYNNNNRTG 1 cut(s) 626
SaqAI TTAA 2 cut(s) 462, 647
SatI GCNGC 3 cut(s) 156, 320, 670
Sau3AI GATC 6 cut(s) 30, 51, 69, 210, 369, 783
SchI GAGTC 2 cut(s) 523, 864
ScrFI CCNGG 4 cut(s) 137, 534, 609, 618
SduI GDGCHC 2 cut(s) 552, 616
SfcI CTRYAG 1 cut(s) 486
SmiMI CAYNNNNRTG 1 cut(s) 626
SmlI CTYRAG 1 cut(s) 634
SmoI CTYRAG 1 cut(s) 634
SphI GCATGC 2 cut(s) 495, 830
Sse9I AATT 6 cut(s) 18, 352, 463, 716, 728, 795
SsiI CCGC 3 cut(s) 266, 272, 669
SspI AATATT 1 cut(s) 585
StyD4I CCNGG 4 cut(s) 135, 532, 607, 616
StyI CCWWGG 3 cut(s) 456, 790, 807
TaaI ACNGT 2 cut(s) 40, 100
TaqI TCGA 4 cut(s) 68, 198, 372, 725
TasI AATT 6 cut(s) 18, 352, 463, 716, 728, 795
TatI WGTACW 2 cut(s) 630, 896
TauI GCSGC 1 cut(s) 672
TfiI GAWTC 2 cut(s) 335, 452
Tru1I TTAA 2 cut(s) 462, 647
Tru9I TTAA 2 cut(s) 462, 647
TscAI CASTG 3 cut(s) 45, 99, 502
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 2 cut(s) 155, 319
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 5 cut(s) 115, 638, 665, 671, 702
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 3 cut(s) 45, 99, 502
XceI RCATGY 2 cut(s) 495, 830
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.