Rh2BG077900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014440
Physical Location & Seq
Reverse (-)
5988690 .. 5991639
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG077900.1

Sequence Viewer

Length: 714 bp
ATGGCGAAAGTGAGGCCAATTCAAGTTTGGATCTTTACAGTGGTGGTGGTGATCTCGGCATTGGTATCGATCTCCGAGTGTGCGAAGAAGCCAGTGACTGTGGCGAGGAAGGAAGACATTCCCTTCATCAAATGCCAGGTCTGTGAGAAGCTCGCAGCTCAGTTGCACCACCAAGTTGAGAAGAAGAGAGCTGAGGTCGAACCCAAGAAGATCTCGGAGTATCAGATTATTGAGATTACGGAGAATGTTTGTAATCTGAAGAAGGCGGAGGCGGATTGGATTTTGCTGATTGACATAGTTGAACAAGGAGATAAGTTGCAGCTGGTGGAACAAGAATCTGAAGGACAATGCAATTCCGAATGCAAGACGATCGAGCGAGCCTGTCAGGAGGTTCTGGGGTATTCTGATACTGATGTTGCTGAATATCTATACAAATCCAAACCCGACATTGATTCCTTGGTTAATTATCTATGCAAAGACCTTACTACAGCATGCAGTGCCAAGCCTCCCCCAGTTCCTAAGGGTAGGACTCCTGGAGAAGTTTTTGTGCCCAAGTCATCAAAAGAGGCTGAAATGGAAAAAATATTGAAATCTATGGAGGTAATTGTCCTTTCATTGGTGCAGAGCTTCATTTCATACAATGCTAGTGTTTTGCTGAATGTTGTGCCATGTTCTTGTTTACCGTTCAGGGTATGCCAGGAGCCCCAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.5

Weight (kDa)

5.46

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29520
fragaria_vesca FvH4_1g07000 FvH4_1g07000
malus_domestica MD02G1074400.v1.1 MD15G1203900.v1.1
prunus_persica Prupe.7G213500_v2.0.a1
pyrus_communis pycom02g05880
rosa_chinensis RchiOBHm_Chr2g0092951
rosa_laevigata RLG00000016352
rosa_multiflora Rmu_sc0000965.1_g000016
rosa_roxburghii Rroxscaffold_2G00148680
rosa_rugosa Rorug02G0030600
rosa_samantha Rh2AG076600 Rh2BG077900 Rh2CG080100 Rh2DG075200
rosa_wichuraiana Rw2G006960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 266, 272
AclWI GGATC 1 cut(s) 38
AcuI CTGAAG 2 cut(s) 278, 360
AfiI CCNNNNNNNGG 1 cut(s) 616
AgsI TTSAA 3 cut(s) 23, 302, 589
AjnI CCWGG 4 cut(s) 135, 532, 696, 705
AluBI AGCT 5 cut(s) 151, 158, 191, 322, 627
AluI AGCT 5 cut(s) 151, 158, 191, 322, 627
AlwI GGATC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 155, 319
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
Asp700I GAANNNNTTC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 61
AxyI CCTNAGG 1 cut(s) 519
BaeGI GKGCMC 1 cut(s) 552
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BanII GRGCYC 1 cut(s) 705
BbsI GAAGAC 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 167, 331
BcgI CGANNNNNNTGC 4 cut(s) 48, 82, 352, 386
BciT130I CCWGG 4 cut(s) 137, 534, 698, 707
BfaI CTAG 1 cut(s) 645
BfmI CTRYAG 1 cut(s) 486
BglII AGATCT 1 cut(s) 210
BisI GCNGC 2 cut(s) 156, 320
BlsI GCNGC 2 cut(s) 157, 321
Bme1390I CCNGG 4 cut(s) 137, 534, 698, 707
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 4 cut(s) 137, 534, 698, 707
BmrI ACTGGG 1 cut(s) 506
BmuI ACTGGG 1 cut(s) 506
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 555
Bpu10I CCTNAGC 1 cut(s) 192
Bsa29I ATCGAT 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 456, 705
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 2 cut(s) 92, 512
Bse21I CCTNAGG 1 cut(s) 519
BseBI CCWGG 4 cut(s) 137, 534, 698, 707
BseCI ATCGAT 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 456, 705
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMII CTCAG 2 cut(s) 173, 183
BseNI ACTGG 2 cut(s) 92, 512
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 2 cut(s) 167, 331
BsgI GTGCAG 1 cut(s) 641
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 616
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 552, 705
Bsp143I GATC 5 cut(s) 30, 51, 69, 210, 369
BspACI CCGC 2 cut(s) 266, 272
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 172, 184
BspDI ATCGAT 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 702
BspPI GGATC 1 cut(s) 38
BsrI ACTGG 2 cut(s) 92, 512
BssECI CCNNGG 2 cut(s) 456, 705
BssMI GATC 5 cut(s) 30, 51, 69, 210, 369
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 4 cut(s) 137, 534, 698, 707
Bst4CI ACNGT 3 cut(s) 40, 100, 684
Bst6I CTCTTC 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 497
BstC8I GCNNGC 3 cut(s) 153, 378, 493
BstDEI CTNAG 3 cut(s) 159, 192, 519
BstKTI GATC 5 cut(s) 33, 54, 72, 213, 372
BstMBI GATC 5 cut(s) 30, 51, 69, 210, 369
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 4 cut(s) 137, 534, 698, 707
BstNSI RCATGY 1 cut(s) 495
BstSCI CCNGG 4 cut(s) 135, 532, 696, 705
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 552
BstV1I GCAGC 2 cut(s) 167, 331
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 2 cut(s) 30, 210
BstYI RGATCY 2 cut(s) 30, 210
Bsu15I ATCGAT 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 1 cut(s) 16
BsuTUI ATCGAT 1 cut(s) 68
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 3 cut(s) 45, 99, 502
Cac8I GCNNGC 3 cut(s) 153, 378, 493
CaiI CAGNNNCTG 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 68
CviAII CATG 3 cut(s) 492, 669, 711
DdeI CTNAG 3 cut(s) 159, 192, 519
DpnI GATC 5 cut(s) 32, 53, 71, 212, 371
DpnII GATC 5 cut(s) 30, 51, 69, 210, 369
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
EciI GGCGGA 2 cut(s) 281, 287
Eco130I CCWWGG 1 cut(s) 456
Eco24I GRGCYC 1 cut(s) 705
Eco57I CTGAAG 2 cut(s) 278, 360
Eco81I CCTNAGG 1 cut(s) 519
EcoRII CCWGG 4 cut(s) 135, 532, 696, 705
EcoT14I CCWWGG 1 cut(s) 456
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 3 cut(s) 495, 672, 714
FaiI YATR 9 cut(s) 296, 430, 472, 493, 596, 637, 670, 694, 712
FatI CATG 3 cut(s) 491, 668, 710
Fnu4HI GCNGC 2 cut(s) 156, 320
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 2 cut(s) 156, 320
FspBI CTAG 1 cut(s) 645
GluI GCNGC 2 cut(s) 156, 320
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 3 cut(s) 495, 672, 714
HinfI GANTC 3 cut(s) 335, 452, 529
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 680
Hpy188I TCNGA 7 cut(s) 76, 217, 225, 258, 340, 358, 406
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 1 cut(s) 680
HpyAV CCTTC 4 cut(s) 103, 133, 256, 335
HpyCH4III ACNGT 3 cut(s) 40, 100, 684
HpyCH4V TGCA 7 cut(s) 166, 319, 351, 363, 474, 495, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 3 cut(s) 159, 192, 519
Hsp92II CATG 3 cut(s) 495, 672, 714
Kzo9I GATC 5 cut(s) 30, 51, 69, 210, 369
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 2 cut(s) 167, 331
MaeI CTAG 1 cut(s) 645
MaeIII GTNAC 1 cut(s) 94
MalI GATC 5 cut(s) 32, 53, 71, 212, 371
MboI GATC 5 cut(s) 30, 51, 69, 210, 369
MboII GAAGA 6 cut(s) 97, 125, 193, 196, 220, 271
MflI RGATCY 2 cut(s) 30, 210
MhlI GDGCHC 2 cut(s) 552, 705
MluCI AATT 4 cut(s) 18, 352, 463, 603
MlyI GAGTC 1 cut(s) 523
MnlI CCTC 8 cut(s) 6, 99, 187, 262, 382, 516, 559, 592
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 322
MspR9I CCNGG 4 cut(s) 137, 534, 698, 707
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 4 cut(s) 137, 534, 698, 707
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeII GATC 5 cut(s) 30, 51, 69, 210, 369
NlaIII CATG 3 cut(s) 495, 672, 714
NlaIV GGNNCC 1 cut(s) 702
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 495
PaeI GCATGC 1 cut(s) 495
PctI GAATGC 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 335, 452
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 2 cut(s) 157, 321
Ple19I CGATCG 1 cut(s) 372
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Psp6I CCWGG 4 cut(s) 135, 532, 696, 705
PspGI CCWGG 4 cut(s) 135, 532, 696, 705
PspN4I GGNNCC 1 cut(s) 702
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 30, 210
PvuI CGATCG 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 322
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 2 cut(s) 156, 320
Sau3AI GATC 5 cut(s) 30, 51, 69, 210, 369
SchI GAGTC 1 cut(s) 523
ScrFI CCNGG 4 cut(s) 137, 534, 698, 707
SduI GDGCHC 2 cut(s) 552, 705
SfcI CTRYAG 1 cut(s) 486
SphI GCATGC 1 cut(s) 495
Sse9I AATT 4 cut(s) 18, 352, 463, 603
SsiI CCGC 2 cut(s) 266, 272
SspI AATATT 1 cut(s) 585
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 4 cut(s) 135, 532, 696, 705
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 3 cut(s) 40, 100, 684
TaqI TCGA 3 cut(s) 68, 198, 372
TasI AATT 4 cut(s) 18, 352, 463, 603
TfiI GAWTC 2 cut(s) 335, 452
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 3 cut(s) 45, 99, 502
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 2 cut(s) 155, 319
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 4 cut(s) 115, 603, 619, 624
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 3 cut(s) 45, 99, 502
XceI RCATGY 1 cut(s) 495
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.