Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010511

Physical Location & Seq

Genomic Coordinates Forward (+)

14495960 .. 14497517

Gene Structure 1558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G29530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCAAAAATCGTGATATTATTTGATTTCGATCGGACTTTGATCGACGGAGATAGTGACAATTGGGTTGTCACTGAAATGGGACTCACAGAGATCTTCCATCAGCTCCGTTTCACTTTACCATGGAATCGTCTTATGGATAGGATGATGATGGAGCTACAATCACAAGGTAGATCGATTGATGACATTAAATCTTGTTTGAAGAAAATGCCTATTGATTCTCATATTATTGAAGCTATCAAATCAGCTAAATCTTCAGGATGTGATTTAAAGATTGTGAGTGATGCAAATCAGTTTTTCATTGAGAAGATACTAGAGCACCATGATTTGGTGGATTGCTTTTCTGAGATTTACACAAATCCAACCTCTCTTGATGATAATGGGAACTTGCGGATCTTGCCTTATCATAGTGATGCATTGCCTCCACATAGCTGCAATCTTTGCCCTTCAAATCTATGCAAGGGTTTAGTAATGGATCATTTACGTGCTTCTTCTTCCAATGATCAAATTCCAAGAAGGTTTATCTACCTTGGAGATGGAGGAGGTGACTTCTGCCCGACATTGAAGCTGAGAGAGTGTGATTTTGTGATGCCGAGAACGAATTATCCGCTATGGAAGAAGATCTCAGACAATCCCTTACTGATCAAAGCAGAAGTCAAGGAATGGAGTAGTGCAGAGGAACAACAGAGAATCCTGCTGCAACTTGTCAGCACAATAACAAAAGAAGAAGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004427 GO:0006725 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042131 GO:0042357 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071704 GO:0071840 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

245

Amino Acids

28.05

Weight (kDa)

5.16

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 236	1.6e-100	Putative Phosphatase
HAD	PF12710	6 - 114	3.7e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29530 AT4G29530
fragaria_vesca	FvH4_1g07100 FvH4_1g07100
malus_domestica	MD15G1204200.v1.1
prunus_persica	Prupe.7G213000_v2.0.a1
pyrus_communis	pycom15g18100
rosa_chinensis	RchiOBHm_Chr2g0092991 RchiOBHm_Chr5g0041441
rosa_laevigata	RLG00000016356
rosa_multiflora	Rmu_co8483593.1_g000001 Rmu_sc0000965.1_g000020
rosa_roxburghii	Rroxscaffold_1G00039130 Rroxscaffold_2G00148640
rosa_rugosa	Rorug02G0031100 Rorug02G0031200
rosa_samantha	Rh2AG077000 Rh2BG078400 Rh2CG080600 Rh2DG075700
rosa_wichuraiana	Rw2G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	328
AciI	CCGC	2 cut(s)	391, 608
AclWI	GGATC	2 cut(s)	401, 483
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	4 cut(s)	202, 233, 450, 565
AloI	GAACNNNNNNTCC	2 cut(s)	589, 621
AluBI	AGCT	6 cut(s)	106, 157, 236, 248, 432, 568
AluI	AGCT	6 cut(s)	106, 157, 236, 248, 432, 568
Alw21I	GWGCWC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	401, 483
ApeKI	GCWGC	2 cut(s)	432, 697
ApoI	RAATTY	1 cut(s)	507
ArsI	GACNNNNNNTTYG	2 cut(s)	639, 671
AsuHPI	GGTGA	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	419, 684
BccI	CCATC	3 cut(s)	108, 145, 530
BclI	TGATCA	2 cut(s)	502, 642
BfaI	CTAG	1 cut(s)	314
BglII	AGATCT	2 cut(s)	93, 621
BisI	GCNGC	2 cut(s)	433, 698
BlsI	GCNGC	2 cut(s)	434, 699
BmsI	GCATC	3 cut(s)	274, 403, 579
Bsa29I	ATCGAT	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	485
BsaBI	GATNNNNATC	2 cut(s)	30, 288
BsaJI	CCNNGG	2 cut(s)	122, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	416
Bse8I	GATNNNNATC	2 cut(s)	30, 288
BseCI	ATCGAT	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	122, 529
BseGI	GGATG	2 cut(s)	150, 266
BseJI	GATNNNNATC	2 cut(s)	30, 288
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	416
BseMII	CTCAG	3 cut(s)	336, 560, 639
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	2 cut(s)	419, 684
BsgI	GTGCAG	1 cut(s)	693
Bsh1285I	CGRYCG	1 cut(s)	34
BshVI	ATCGAT	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	9 cut(s)	31, 42, 93, 173, 393, 475, 502, 621, 642
Bsp19I	CCATGG	1 cut(s)	122
BspACI	CCGC	2 cut(s)	391, 608
BspCNI	CTCAG	3 cut(s)	337, 561, 638
BspDI	ATCGAT	1 cut(s)	176
BspPI	GGATC	2 cut(s)	401, 483
BsrDI	GCAATG	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	122, 529
BssMI	GATC	9 cut(s)	31, 42, 93, 173, 393, 475, 502, 621, 642
BssT1I	CCWWGG	2 cut(s)	122, 529
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstBAI	YACGTR	1 cut(s)	485
BstDEI	CTNAG	3 cut(s)	345, 569, 625
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	150, 266
BstKTI	GATC	9 cut(s)	34, 45, 96, 176, 396, 478, 505, 624, 645
BstMBI	GATC	9 cut(s)	31, 42, 93, 173, 393, 475, 502, 621, 642
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 441
BstV1I	GCAGC	2 cut(s)	419, 684
BstX2I	RGATCY	3 cut(s)	93, 393, 621
BstYI	RGATCY	3 cut(s)	93, 393, 621
Bsu15I	ATCGAT	1 cut(s)	176
BsuTUI	ATCGAT	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	150, 266
BtsIMutI	CAGTG	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	176
CviAII	CATG	2 cut(s)	123, 323
CviJI	RGCY	6 cut(s)	106, 157, 236, 248, 432, 568
CviKI_1	RGCY	6 cut(s)	106, 157, 236, 248, 432, 568
DdeI	CTNAG	3 cut(s)	345, 569, 625
DpnI	GATC	9 cut(s)	33, 44, 95, 175, 395, 477, 504, 623, 644
DpnII	GATC	9 cut(s)	31, 42, 93, 173, 393, 475, 502, 621, 642
DraI	TTTAAA	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	122, 529
Eco57I	CTGAAG	1 cut(s)	240
EcoT14I	CCWWGG	2 cut(s)	122, 529
EcoT22I	ATGCAT	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	122, 529
FaeI	CATG	2 cut(s)	126, 326
FaiI	YATR	9 cut(s)	124, 137, 225, 324, 408, 429, 457, 613, 736
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	2 cut(s)	122, 322
FbaI	TGATCA	2 cut(s)	502, 642
Fnu4HI	GCNGC	2 cut(s)	433, 698
FokI	GGATG	2 cut(s)	157, 273
Fsp4HI	GCNGC	2 cut(s)	433, 698
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	2 cut(s)	433, 698
Hin1II	CATG	2 cut(s)	126, 326
HinfI	GANTC	5 cut(s)	84, 127, 218, 690, 731
HphI	GGTGA	1 cut(s)	557
Hpy188I	TCNGA	3 cut(s)	36, 346, 628
Hpy188III	TCNNGA	3 cut(s)	13, 258, 371
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	456, 510
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	6 cut(s)	287, 416, 435, 459, 674, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 441
HpyF3I	CTNAG	3 cut(s)	345, 569, 625
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	2 cut(s)	126, 326
Ksp22I	TGATCA	2 cut(s)	502, 642
Kzo9I	GATC	9 cut(s)	31, 42, 93, 173, 393, 475, 502, 621, 642
LmnI	GCTCC	2 cut(s)	111, 154
LpnPI	CCDG	2 cut(s)	243, 707
Lsp1109I	GCAGC	2 cut(s)	419, 684
LweI	GCATC	3 cut(s)	274, 403, 579
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	3 cut(s)	56, 70, 545
MalI	GATC	9 cut(s)	33, 44, 95, 175, 395, 477, 504, 623, 644
MboI	GATC	9 cut(s)	31, 42, 93, 173, 393, 475, 502, 621, 642
MboII	GAAGA	9 cut(s)	88, 214, 246, 319, 483, 486, 628, 631, 737
MfeI	CAATTG	1 cut(s)	61
MflI	RGATCY	3 cut(s)	93, 393, 621
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	3 cut(s)	61, 507, 601
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	5 cut(s)	376, 432, 533, 536, 670
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	2 cut(s)	189, 269
MslI	CAYNNNNRTG	3 cut(s)	77, 411, 483
MunI	CAATTG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	397, 441
NcoI	CCATGG	1 cut(s)	122
NdeII	GATC	9 cut(s)	31, 42, 93, 173, 393, 475, 502, 621, 642
NlaIII	CATG	2 cut(s)	126, 326
NmeAIII	GCCGAG	1 cut(s)	618
NmuCI	GTSAC	3 cut(s)	56, 70, 545
NsiI	ATGCAT	1 cut(s)	418
PfeI	GAWTC	4 cut(s)	127, 218, 690, 731
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	434, 699
Ple19I	CGATCG	1 cut(s)	34
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Ppu21I	YACGTR	1 cut(s)	485
PsuI	RGATCY	3 cut(s)	93, 393, 621
PvuI	CGATCG	1 cut(s)	34
RseI	CAYNNNNRTG	3 cut(s)	77, 411, 483
SaqAI	TTAA	2 cut(s)	189, 269
SatI	GCNGC	2 cut(s)	433, 698
Sau3AI	GATC	9 cut(s)	31, 42, 93, 173, 393, 475, 502, 621, 642
SchI	GAGTC	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	3 cut(s)	274, 403, 579
SmiMI	CAYNNNNRTG	3 cut(s)	77, 411, 483
Sse9I	AATT	3 cut(s)	61, 507, 601
SsiI	CCGC	2 cut(s)	391, 608
SspMI	CTAG	1 cut(s)	314
StyI	CCWWGG	2 cut(s)	122, 529
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	3 cut(s)	30, 45, 176
TasI	AATT	3 cut(s)	61, 507, 601
TfiI	GAWTC	4 cut(s)	127, 218, 690, 731
Tru1I	TTAA	2 cut(s)	189, 269
Tru9I	TTAA	2 cut(s)	189, 269
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	3 cut(s)	56, 70, 545
TseI	GCWGC	2 cut(s)	432, 697
Tsp45I	GTSAC	3 cut(s)	56, 70, 545
TspDTI	ATGAA	2 cut(s)	289, 723
TspGWI	ACGGA	2 cut(s)	63, 98
TspRI	CASTG	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	328
XapI	RAATTY	1 cut(s)	507
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.