Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010511

Physical Location & Seq

Genomic Coordinates Reverse (-)

2487579 .. 2492899

Gene Structure 5321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0031100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCTGAATTCGATGGCTTCTTTGATTTTTACTACAGTAGCCATGAAGGTGCGATCATCGGTGAAGAAGATGTGCGAGTTTTGTAAGACAATTAAACGCCGTGGACGTGTTTATGTGTACTGCACAGCCAATCCTAAGCATAAGCAGAGACAGGGCATGTCTACATTTGCATATCAAGGCACTGATGCTCCCATGTCTGCGGAGACTAGTATCACCAAGCAGGAGAGCAACTTTGGTCAGAGCTCTCACGTAGGTCTGGCATCTCTGATTCCCAGAAAGAATGAGCAGTCAATGCCCTCTCCGACCCTTGGATGGAGGAGCAGTGGTTGTTTTGGATGTTGCACGAAACCCACACCGATTATTGCTGTCGACGAGCCTTCAAAGGGATTGAAAATTCAAGGGCGGTCGGTGAAGAAACCTGGCATATCGGATGATTTTTGGAGCAGCAGCACGTATGATTTGGACAACAGCGCTGTGCAGTCCCAGAGAAGCGTCTCATCCATCAGCACCTTACACCAGACCCTCCTCCATGGCAGCGGCACTGGTAGCACGAGCAGCCAACCTGACTTTGTAAATCAAGGTCTTGTTCTCTGGAACCAAACCAGGCTTGAGTGGATTGGAAATGGCAAGCCTAAGGATGAAACTCTAAGAAGTCGGGAAAACAGATTAAGTTGGAATTCAACTTACGAGAGATTGGTTGGACCCAAACAGAGACAGCCTTTTCCCCAGCGCATTCCTCTGTCTGAAATGATAGAATTTCTAGTGGAAGTATGGGAGCAGGAGGGGCTGTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004427 GO:0006725 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0034641 GO:0042131 GO:0042357 GO:0042578 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0046483 GO:0051186 GO:0051188 GO:0051259 GO:0051262 GO:0065003 GO:0071704 GO:0071840 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

265

Amino Acids

29.64

Weight (kDa)

9.4

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36	PF00444	15 - 52	1.2e-20	Ribosomal protein L36
clamp_Gag1-like	PF13259	150 - 265	2.4e-20	Gag1-like, clamp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29530 AT4G29530
fragaria_vesca	FvH4_1g07100 FvH4_1g07100
malus_domestica	MD15G1204200.v1.1
prunus_persica	Prupe.7G213000_v2.0.a1
pyrus_communis	pycom15g18100
rosa_chinensis	RchiOBHm_Chr2g0092991 RchiOBHm_Chr5g0041441
rosa_laevigata	RLG00000016356
rosa_multiflora	Rmu_co8483593.1_g000001 Rmu_sc0000965.1_g000020
rosa_roxburghii	Rroxscaffold_1G00039130 Rroxscaffold_2G00148640
rosa_rugosa	Rorug02G0031100 Rorug02G0031200
rosa_samantha	Rh2AG077000 Rh2BG078400 Rh2CG080600 Rh2DG075700
rosa_wichuraiana	Rw2G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	161, 369
AciI	CCGC	3 cut(s)	200, 403, 537
AcsI	RAATTY	4 cut(s)	7, 393, 676, 755
AfaI	GTAC	1 cut(s)	119
AfeI	AGCGCT	1 cut(s)	472
AfiI	CCNNNNNNNGG	3 cut(s)	308, 312, 383
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	4 cut(s)	381, 391, 398, 681
AhlI	ACTAGT	1 cut(s)	206
AjiI	CACGTC	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	418, 602
AluBI	AGCT	1 cut(s)	243
AluI	AGCT	1 cut(s)	243
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	4 cut(s)	142, 197, 499, 706
Aor51HI	AGCGCT	1 cut(s)	472
ApeKI	GCWGC	4 cut(s)	444, 447, 534, 555
ApoI	RAATTY	4 cut(s)	7, 393, 676, 755
AspLEI	GCGC	2 cut(s)	473, 732
AspS9I	GGNCC	1 cut(s)	701
AsuHPI	GGTGA	3 cut(s)	73, 205, 421
AvaII	GGWCC	1 cut(s)	701
AxyI	CCTNAGG	1 cut(s)	633
BanII	GRGCYC	1 cut(s)	245
BauI	CACGAG	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	4 cut(s)	456, 459, 546, 567
BccI	CCATC	3 cut(s)	7, 306, 509
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	2 cut(s)	420, 604
BcoDI	GTCTC	4 cut(s)	142, 197, 499, 706
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	2 cut(s)	207, 761
BfmI	CTRYAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	474
BisI	GCNGC	5 cut(s)	445, 448, 535, 538, 556
BlsI	GCNGC	5 cut(s)	446, 449, 536, 539, 557
Bme1390I	CCNGG	2 cut(s)	420, 604
Bme18I	GGWCC	1 cut(s)	701
BmgBI	CACGTC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	701
BmiI	GGNNCC	2 cut(s)	596, 703
BmrFI	CCNGG	2 cut(s)	420, 604
BmsI	GCATC	2 cut(s)	175, 269
Bpu10I	CCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	629
BsaAI	YACGTR	2 cut(s)	250, 453
BsaJI	CCNNGG	3 cut(s)	100, 307, 529
BsaXI	ACNNNNNCTCC	7 cut(s)	172, 202, 307, 310, 337, 340, 773
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 312, 383
Bse1I	ACTGG	1 cut(s)	547
Bse21I	CCTNAGG	1 cut(s)	633
BseBI	CCWGG	2 cut(s)	420, 604
BseDI	CCNNGG	3 cut(s)	100, 307, 529
BseGI	GGATG	5 cut(s)	317, 341, 436, 497, 643
BseLI	CCNNNNNNNGG	3 cut(s)	308, 312, 383
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	2 cut(s)	331, 515
BseXI	GCAGC	4 cut(s)	456, 459, 546, 567
BseYI	CCCAGC	1 cut(s)	726
BsgI	GTGCAG	2 cut(s)	106, 497
Bsh1285I	CGRYCG	1 cut(s)	407
BsiEI	CGRYCG	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	3 cut(s)	308, 312, 383
BsmAI	GTCTC	4 cut(s)	142, 197, 499, 706
BsmBI	CGTCTC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	732
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	529
BspACI	CCGC	3 cut(s)	200, 403, 537
BspLI	GGNNCC	2 cut(s)	596, 703
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	3 cut(s)	100, 307, 529
BssMI	GATC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	550
BssT1I	CCWWGG	2 cut(s)	307, 529
Bst2BI	CACGAG	1 cut(s)	550
Bst2UI	CCWGG	2 cut(s)	420, 604
Bst4CI	ACNGT	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstBAI	YACGTR	2 cut(s)	250, 453
BstC8I	GCNNGC	1 cut(s)	629
BstDEI	CTNAG	3 cut(s)	135, 633, 647
BstDSI	CCRYGG	2 cut(s)	100, 529
BstF5I	GGATG	5 cut(s)	317, 341, 436, 497, 643
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	2 cut(s)	473, 732
BstKTI	GATC	1 cut(s)	56
BstMAI	GTCTC	4 cut(s)	142, 197, 499, 706
BstMBI	GATC	1 cut(s)	53
BstMCI	CGRYCG	1 cut(s)	407
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 546, 555, 784
BstNI	CCWGG	2 cut(s)	420, 604
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	418, 602
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	4 cut(s)	456, 459, 546, 567
Bsu36I	CCTNAGG	1 cut(s)	633
BtgI	CCRYGG	2 cut(s)	100, 529
BtrI	CACGTC	1 cut(s)	107
BtsCI	GGATG	5 cut(s)	317, 341, 436, 497, 643
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	180, 328, 540
Cac8I	GCNNGC	1 cut(s)	629
CfoI	GCGC	2 cut(s)	473, 732
Cfr13I	GGNCC	1 cut(s)	701
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	4 cut(s)	43, 157, 193, 530
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	135, 633, 647
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	307, 529
Eco24I	GRGCYC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	701
Eco47III	AGCGCT	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	243
EcoRI	GAATTC	2 cut(s)	7, 676
EcoRII	CCWGG	2 cut(s)	418, 602
EcoT14I	CCWWGG	2 cut(s)	307, 529
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	2 cut(s)	307, 529
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	4 cut(s)	46, 160, 196, 533
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	4 cut(s)	42, 156, 192, 529
FblI	GTMKAC	2 cut(s)	161, 369
Fnu4HI	GCNGC	5 cut(s)	445, 448, 535, 538, 556
FokI	GGATG	5 cut(s)	324, 348, 443, 484, 650
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	5 cut(s)	445, 448, 535, 538, 556
FspBI	CTAG	2 cut(s)	207, 761
GlaI	GCGC	2 cut(s)	472, 731
GluI	GCNGC	5 cut(s)	445, 448, 535, 538, 556
GsaI	CCCAGC	1 cut(s)	730
HaeII	RGCGCY	1 cut(s)	474
HgaI	GACGC	1 cut(s)	481
HhaI	GCGC	2 cut(s)	473, 732
Hin1II	CATG	4 cut(s)	46, 160, 196, 533
Hin6I	GCGC	2 cut(s)	471, 730
HinP1I	GCGC	2 cut(s)	471, 730
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	1 cut(s)	268
HphI	GGTGA	3 cut(s)	73, 205, 421
Hpy166II	GTNNAC	4 cut(s)	104, 118, 162, 370
Hpy188I	TCNGA	5 cut(s)	240, 267, 303, 430, 745
Hpy188III	TCNNGA	2 cut(s)	592, 656
Hpy8I	GTNNAC	4 cut(s)	104, 118, 162, 370
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	40, 387
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	3 cut(s)	106, 249, 452
HpyCH4V	TGCA	4 cut(s)	123, 170, 342, 478
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 546, 555, 784
HpyF3I	CTNAG	3 cut(s)	135, 633, 647
HpySE526I	ACGT	3 cut(s)	106, 249, 452
Hsp92II	CATG	4 cut(s)	46, 160, 196, 533
HspAI	GCGC	2 cut(s)	471, 730
Kzo9I	GATC	1 cut(s)	53
LmnI	GCTCC	4 cut(s)	193, 318, 441, 775
Lsp1109I	GCAGC	4 cut(s)	456, 459, 546, 567
LweI	GCATC	2 cut(s)	175, 269
MaeI	CTAG	2 cut(s)	207, 761
MaeII	ACGT	3 cut(s)	106, 249, 452
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MboII	GAAGA	3 cut(s)	76, 79, 424
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	5 cut(s)	7, 90, 393, 676, 755
MmeI	TCCRAC	3 cut(s)	326, 653, 679
MnlI	CCTC	6 cut(s)	307, 309, 533, 536, 747, 775
MseI	TTAA	2 cut(s)	93, 668
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	537
MspR9I	CCNGG	2 cut(s)	420, 604
Mva1269I	GAATGC	1 cut(s)	732
MvaI	CCWGG	2 cut(s)	420, 604
MwoI	GCNNNNNNNGC	4 cut(s)	292, 546, 555, 784
NcoI	CCATGG	1 cut(s)	529
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	4 cut(s)	46, 160, 196, 533
NlaIV	GGNNCC	2 cut(s)	596, 703
NspI	RCATGY	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PctI	GAATGC	1 cut(s)	732
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	5 cut(s)	446, 449, 536, 539, 557
Ppu21I	YACGTR	2 cut(s)	250, 453
Psp124BI	GAGCTC	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	418, 602
PspFI	CCCAGC	1 cut(s)	726
PspGI	CCWGG	2 cut(s)	418, 602
PspN4I	GGNNCC	2 cut(s)	596, 703
PspPI	GGNCC	1 cut(s)	701
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	245
SalI	GTCGAC	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	93, 668
SatI	GCNGC	5 cut(s)	445, 448, 535, 538, 556
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	1 cut(s)	701
ScrFI	CCNGG	2 cut(s)	420, 604
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	2 cut(s)	175, 269
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	5 cut(s)	7, 90, 393, 676, 755
SsiI	CCGC	3 cut(s)	200, 403, 537
SspMI	CTAG	2 cut(s)	207, 761
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	418, 602
StyI	CCWWGG	2 cut(s)	307, 529
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	3 cut(s)	109, 252, 455
TaqI	TCGA	2 cut(s)	11, 369
TasI	AATT	5 cut(s)	7, 90, 393, 676, 755
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	93, 668
Tru9I	TTAA	2 cut(s)	93, 668
TscAI	CASTG	3 cut(s)	187, 328, 547
TseI	GCWGC	4 cut(s)	444, 447, 534, 555
TspDTI	ATGAA	2 cut(s)	59, 654
TspRI	CASTG	3 cut(s)	187, 328, 547
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	4 cut(s)	7, 393, 676, 755
XceI	RCATGY	1 cut(s)	160
XmiI	GTMKAC	2 cut(s)	161, 369
XspI	CTAG	2 cut(s)	207, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.