Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000965.1

Orthogroup ID

OG0010511

Physical Location & Seq

Genomic Coordinates Forward (+)

92686 .. 96380

Gene Structure 3695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000965.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atggcaaggttgtgttcaagagggaagaagctgatagctttgcacagcaatcacaaatcaccagactcttcagcgttggcaagtttggctgttacagtgaaaactggtttctgggtcgaaagaaaaccacctccggcgcttagaatgacgggaacagtggtggtttttgacttcgaccggaccctgatcgacgatgacaccgatcgatgggtggtgacggagatgggtctcacccagctcttcaatgagcttcgtcgctgctctaccatgacatggaactcactcatggatagaatgatgatggagcttcatttgcaaggaaagacctctgaggacattaaagagtgcctcaaaagaactccaatgcatccacaagtagctgcggctattaagtcagctcatgcttcaggatgtgacttgaagataattagtgatgcaaatcagtttttcattgagtcaatcttggaatgccatggcctgttgggatgcttctcacagatcatcacaaacccaacgtctgtagatagagatggaagactgagaatctttccttaccatgatccagtctcatcttctcatggttgcaatctttgcccttcgggtcaggtgattgaccaatttttagcttctgcttctgaaaatgggaggaagagatgcatctaccttggagatgggagaaactacgatttttgcccgccaactctgaaactagtagagggagaccatgtaataccaaggaaggactgtcctctatgggattgcacttgcagcaactactcactgataaagaatcatgttgttagaaacattgtatccaccatggcaccgcccctgcagcgatcctcccagaccaccaaggttgcgctgccactccgaccaccagaaaaccgccatagccacgccgccaatacaggttcaggagagctccagaggaaaccccgccaccagcagtcgtggaagcttcgacgatccaccaaaacctgcacaaacctatcagcccggactcctttgccaaaacctcgagccaccccattcataggactacccagccattgctttcaaaacccgcccggtagcaacccagtcggcatggcgaaccaccaccgacgagcgccgccggacgagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004427 GO:0006725 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0034641 GO:0042131 GO:0042357 GO:0042578 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0046483 GO:0051186 GO:0051188 GO:0051259 GO:0051262 GO:0065003 GO:0071704 GO:0071840 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

376

Amino Acids

42.02

Weight (kDa)

9.3

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29530 AT4G29530
fragaria_vesca	FvH4_1g07100 FvH4_1g07100
malus_domestica	MD15G1204200.v1.1
prunus_persica	Prupe.7G213000_v2.0.a1
pyrus_communis	pycom15g18100
rosa_chinensis	RchiOBHm_Chr2g0092991 RchiOBHm_Chr5g0041441
rosa_laevigata	RLG00000016356
rosa_multiflora	Rmu_co8483593.1_g000001 Rmu_sc0000965.1_g000020
rosa_roxburghii	Rroxscaffold_1G00039130 Rroxscaffold_2G00148640
rosa_rugosa	Rorug02G0031100 Rorug02G0031200
rosa_samantha	Rh2AG077000 Rh2BG078400 Rh2CG080600 Rh2DG075700
rosa_wichuraiana	Rw2G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	989
AccB1I	GGYRCC	1 cut(s)	823
AccB7I	CCANNNNNTGG	1 cut(s)	273
AciI	CCGC	8 cut(s)	383, 695, 827, 889, 903, 940, 1067, 1115
AclWI	GGATC	3 cut(s)	554, 834, 963
AcuI	CTGAAG	2 cut(s)	54, 390
AfiI	CCNNNNNNNGG	3 cut(s)	207, 273, 1037
AgsI	TTSAA	4 cut(s)	18, 244, 421, 1061
AhlI	ACTAGT	1 cut(s)	709
Alw21I	GWGCWC	1 cut(s)	927
Alw26I	GTCTC	3 cut(s)	233, 571, 714
AlwI	GGATC	3 cut(s)	554, 834, 963
Ama87I	CYCGRG	1 cut(s)	1020
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	5 cut(s)	258, 380, 768, 835, 865
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AspLEI	GCGC	3 cut(s)	139, 865, 1114
AspS9I	GGNCC	1 cut(s)	180
AsuC2I	CCSGG	2 cut(s)	1000, 1071
AsuHPI	GGTGA	4 cut(s)	51, 223, 226, 619
AvaI	CYCGRG	1 cut(s)	1020
AvaII	GGWCC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	927
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	927
BbvI	GCAGC	5 cut(s)	245, 367, 780, 847, 852
BccI	CCATC	5 cut(s)	201, 217, 295, 524, 665
BcgI	CGANNNNNNTGC	2 cut(s)	1066, 1100
BciVI	GTATCC	1 cut(s)	823
BcnI	CCSGG	2 cut(s)	1000, 1071
BcoDI	GTCTC	3 cut(s)	233, 571, 714
BcuI	ACTAGT	1 cut(s)	709
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	2 cut(s)	519, 833
BfoI	RGCGCY	2 cut(s)	140, 1115
BfuAI	ACCTGC	1 cut(s)	989
BfuI	GTATCC	1 cut(s)	823
BisI	GCNGC	8 cut(s)	259, 381, 384, 769, 836, 866, 903, 1115
BlsI	GCNGC	8 cut(s)	260, 382, 385, 770, 837, 867, 904, 1116
Bme1390I	CCNGG	2 cut(s)	1000, 1071
Bme18I	GGWCC	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	1020
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	182, 825
BmrFI	CCNGG	2 cut(s)	1000, 1071
BmrI	ACTGGG	1 cut(s)	1076
BmsI	GCATC	5 cut(s)	376, 424, 476, 644, 666
BmuI	ACTGGG	1 cut(s)	1076
BpiI	GAAGAC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	911
BpuMI	CCSGG	2 cut(s)	1000, 1071
Bsa29I	ATCGAT	1 cut(s)	205
BsaBI	GATNNNNATC	1 cut(s)	438
BsaI	GGTCTC	2 cut(s)	233, 714
BsaJI	CCNNGG	5 cut(s)	472, 664, 734, 819, 855
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 273, 1037
Bse1I	ACTGG	3 cut(s)	109, 563, 1082
Bse3DI	GCAATG	1 cut(s)	1051
Bse8I	GATNNNNATC	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	205
BseDI	CCNNGG	5 cut(s)	472, 664, 734, 819, 855
BseGI	GGATG	3 cut(s)	367, 416, 491
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	3 cut(s)	207, 273, 1037
BseMI	GCAATG	1 cut(s)	1051
BseMII	CTCAG	2 cut(s)	321, 530
BseNI	ACTGG	3 cut(s)	109, 563, 1082
BseXI	GCAGC	5 cut(s)	245, 367, 780, 847, 852
BseYI	CCCAGC	2 cut(s)	234, 1046
BsgI	GTGCAG	1 cut(s)	967
Bsh1285I	CGRYCG	2 cut(s)	178, 205
BshFI	GGCC	1 cut(s)	477
BshNI	GGYRCC	1 cut(s)	823
BshVI	ATCGAT	1 cut(s)	205
BsiEI	CGRYCG	2 cut(s)	178, 205
BsiHKAI	GWGCWC	1 cut(s)	927
BsiHKCI	CYCGRG	1 cut(s)	1020
BsiSI	CCGG	5 cut(s)	134, 178, 1000, 1071, 1118
BslI	CCNNNNNNNGG	3 cut(s)	207, 273, 1037
BsmAI	GTCTC	3 cut(s)	233, 571, 714
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	477
Bso31I	GGTCTC	2 cut(s)	233, 714
BsoBI	CYCGRG	1 cut(s)	1020
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp143I	GATC	6 cut(s)	186, 202, 498, 559, 839, 968
Bsp19I	CCATGG	2 cut(s)	472, 819
BspACI	CCGC	8 cut(s)	383, 695, 827, 889, 903, 940, 1067, 1115
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	2 cut(s)	322, 531
BspDI	ATCGAT	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	182, 825
BspMAI	CTGCAG	1 cut(s)	837
BspMI	ACCTGC	1 cut(s)	989
BspPI	GGATC	3 cut(s)	554, 834, 963
BspQI	GCTCTTC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	823
BspTNI	GGTCTC	2 cut(s)	233, 714
BsrDI	GCAATG	1 cut(s)	1051
BsrI	ACTGG	3 cut(s)	109, 563, 1082
BssECI	CCNNGG	5 cut(s)	472, 664, 734, 819, 855
BssMI	GATC	6 cut(s)	186, 202, 498, 559, 839, 968
BssT1I	CCWWGG	5 cut(s)	472, 664, 734, 819, 855
Bst4CI	ACNGT	3 cut(s)	97, 157, 746
Bst6I	CTCTTC	3 cut(s)	73, 245, 644
BstAPI	GCANNNNNTGC	1 cut(s)	591
BstC8I	GCNNGC	1 cut(s)	695
BstDEI	CTNAG	3 cut(s)	140, 330, 539
BstDSI	CCRYGG	2 cut(s)	472, 819
BstF5I	GGATG	3 cut(s)	367, 416, 491
BstH2I	RGCGCY	2 cut(s)	140, 1115
BstHHI	GCGC	3 cut(s)	139, 865, 1114
BstKTI	GATC	6 cut(s)	189, 205, 501, 562, 842, 971
BstMAI	GTCTC	3 cut(s)	233, 571, 714
BstMBI	GATC	6 cut(s)	186, 202, 498, 559, 839, 968
BstMCI	CGRYCG	2 cut(s)	178, 205
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 313, 591, 768, 835
BstSCI	CCNGG	2 cut(s)	998, 1069
BstSFI	CTRYAG	2 cut(s)	519, 833
BstV1I	GCAGC	5 cut(s)	245, 367, 780, 847, 852
BstV2I	GAAGAC	1 cut(s)	541
Bsu15I	ATCGAT	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	823
BsuRI	GGCC	1 cut(s)	477
BsuTUI	ATCGAT	1 cut(s)	205
BtgI	CCRYGG	2 cut(s)	472, 819
BtsCI	GGATG	3 cut(s)	367, 416, 491
BtsIMutI	CAGTG	3 cut(s)	102, 162, 779
BveI	ACCTGC	1 cut(s)	989
Cac8I	GCNNGC	1 cut(s)	695
CfoI	GCGC	3 cut(s)	139, 865, 1114
Cfr13I	GGNCC	1 cut(s)	180
ClaI	ATCGAT	1 cut(s)	205
CspCI	CAANNNNNGTGG	2 cut(s)	841, 876
DdeI	CTNAG	3 cut(s)	140, 330, 539
DpnI	GATC	6 cut(s)	188, 204, 500, 561, 841, 970
DpnII	GATC	6 cut(s)	186, 202, 498, 559, 839, 968
Eam1104I	CTCTTC	3 cut(s)	73, 245, 644
EarI	CTCTTC	3 cut(s)	73, 245, 644
Ecl136II	GAGCTC	1 cut(s)	925
Eco130I	CCWWGG	5 cut(s)	472, 664, 734, 819, 855
Eco24I	GRGCYC	1 cut(s)	927
Eco31I	GGTCTC	2 cut(s)	233, 714
Eco47I	GGWCC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	925
Eco57I	CTGAAG	2 cut(s)	54, 390
Eco88I	CYCGRG	1 cut(s)	1020
EcoICRI	GAGCTC	1 cut(s)	925
EcoT14I	CCWWGG	5 cut(s)	472, 664, 734, 819, 855
EcoT22I	ATGCAT	2 cut(s)	369, 659
EcoT38I	GRGCYC	1 cut(s)	927
ErhI	CCWWGG	5 cut(s)	472, 664, 734, 819, 855
FauI	CCCGC	3 cut(s)	702, 947, 1074
Fnu4HI	GCNGC	8 cut(s)	259, 381, 384, 769, 836, 866, 903, 1115
FokI	GGATG	3 cut(s)	354, 423, 498
FriOI	GRGCYC	1 cut(s)	927
Fsp4HI	GCNGC	8 cut(s)	259, 381, 384, 769, 836, 866, 903, 1115
FspBI	CTAG	1 cut(s)	710
GlaI	GCGC	3 cut(s)	138, 864, 1113
GluI	GCNGC	8 cut(s)	259, 381, 384, 769, 836, 866, 903, 1115
GsaI	CCCAGC	2 cut(s)	238, 1050
GsuI	CTGGAG	1 cut(s)	911
HaeII	RGCGCY	2 cut(s)	140, 1115
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	5 cut(s)	134, 178, 1000, 1071, 1118
HhaI	GCGC	3 cut(s)	139, 865, 1114
Hin6I	GCGC	3 cut(s)	137, 863, 1112
HinP1I	GCGC	3 cut(s)	137, 863, 1112
HindIII	AAGCTT	1 cut(s)	959
HinfI	GANTC	5 cut(s)	65, 455, 543, 790, 1003
HpaII	CCGG	5 cut(s)	134, 178, 1000, 1071, 1118
HphI	GGTGA	4 cut(s)	51, 223, 226, 619
Hpy188I	TCNGA	4 cut(s)	331, 637, 705, 875
Hpy188III	TCNNGA	4 cut(s)	18, 408, 918, 928
Hpy99I	CGWCG	4 cut(s)	194, 258, 969, 1110
HpyAV	CCTTC	2 cut(s)	606, 733
HpyCH4III	ACNGT	3 cut(s)	97, 157, 746
HpyCH4IV	ACGT	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 313, 591, 768, 835
HpyF3I	CTNAG	3 cut(s)	140, 330, 539
HpySE526I	ACGT	1 cut(s)	515
HspAI	GCGC	3 cut(s)	137, 863, 1112
Kzo9I	GATC	6 cut(s)	186, 202, 498, 559, 839, 968
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	2 cut(s)	304, 930
Lsp1109I	GCAGC	5 cut(s)	245, 367, 780, 847, 852
LweI	GCATC	5 cut(s)	376, 424, 476, 644, 666
MaeI	CTAG	1 cut(s)	710
MaeII	ACGT	1 cut(s)	515
MaeIII	GTNAC	3 cut(s)	91, 214, 413
MalI	GATC	6 cut(s)	188, 204, 500, 561, 841, 970
MboI	GATC	6 cut(s)	186, 202, 498, 559, 839, 968
MboII	GAAGA	7 cut(s)	37, 60, 232, 433, 546, 564, 661
MhlI	GDGCHC	1 cut(s)	927
MluCI	AATT	2 cut(s)	426, 617
MlyI	GAGTC	3 cut(s)	59, 464, 997
MmeI	TCCRAC	1 cut(s)	898
Mph1103I	ATGCAT	2 cut(s)	369, 659
MseI	TTAA	2 cut(s)	339, 390
MspI	CCGG	5 cut(s)	134, 178, 1000, 1071, 1118
MspR9I	CCNGG	2 cut(s)	1000, 1071
Mva1269I	GAATGC	1 cut(s)	473
MwoI	GCNNNNNNNGC	5 cut(s)	86, 313, 591, 768, 835
NciI	CCSGG	2 cut(s)	1000, 1071
NcoI	CCATGG	2 cut(s)	472, 819
NdeII	GATC	6 cut(s)	186, 202, 498, 559, 839, 968
NlaIV	GGNNCC	2 cut(s)	182, 825
NmuCI	GTSAC	2 cut(s)	214, 413
NsiI	ATGCAT	2 cut(s)	369, 659
PaeR7I	CTCGAG	1 cut(s)	1020
PciSI	GCTCTTC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	543, 790
PflMI	CCANNNNNTGG	1 cut(s)	273
PkrI	GCNGC	8 cut(s)	260, 382, 385, 770, 837, 867, 904, 1116
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	3 cut(s)	59, 463, 997
PpsI	GAGTC	3 cut(s)	59, 463, 997
Psp124BI	GAGCTC	1 cut(s)	927
PspFI	CCCAGC	2 cut(s)	234, 1046
PspN4I	GGNNCC	2 cut(s)	182, 825
PspPI	GGNCC	1 cut(s)	180
PspXI	VCTCGAGB	1 cut(s)	1020
PstI	CTGCAG	1 cut(s)	837
PvuI	CGATCG	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	927
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	339, 390
SatI	GCNGC	8 cut(s)	259, 381, 384, 769, 836, 866, 903, 1115
Sau3AI	GATC	6 cut(s)	186, 202, 498, 559, 839, 968
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	3 cut(s)	59, 464, 997
ScrFI	CCNGG	2 cut(s)	1000, 1071
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	5 cut(s)	376, 424, 476, 644, 666
SfcI	CTRYAG	2 cut(s)	519, 833
Sfr274I	CTCGAG	1 cut(s)	1020
SinI	GGWCC	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	1020
SmlI	CTYRAG	1 cut(s)	1020
SmoI	CTYRAG	1 cut(s)	1020
SpeI	ACTAGT	1 cut(s)	709
Sse9I	AATT	2 cut(s)	426, 617
SsiI	CCGC	8 cut(s)	383, 695, 827, 889, 903, 940, 1067, 1115
SspMI	CTAG	1 cut(s)	710
SstI	GAGCTC	1 cut(s)	927
StyD4I	CCNGG	2 cut(s)	998, 1069
StyI	CCWWGG	5 cut(s)	472, 664, 734, 819, 855
TaaI	ACNGT	3 cut(s)	97, 157, 746
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	6 cut(s)	117, 174, 189, 205, 964, 1021
TasI	AATT	2 cut(s)	426, 617
TauI	GCSGC	3 cut(s)	386, 905, 1117
TfiI	GAWTC	2 cut(s)	543, 790
Tru1I	TTAA	2 cut(s)	339, 390
Tru9I	TTAA	2 cut(s)	339, 390
TscAI	CASTG	3 cut(s)	102, 162, 786
TseFI	GTSAC	2 cut(s)	214, 413
TseI	GCWGC	5 cut(s)	258, 380, 768, 835, 865
Tsp45I	GTSAC	2 cut(s)	214, 413
TspDTI	ATGAA	3 cut(s)	299, 439, 1024
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	3 cut(s)	102, 162, 786
Van91I	CCANNNNNTGG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	180
XhoI	CTCGAG	1 cut(s)	1020
XspI	CTAG	1 cut(s)	710
Zsp2I	ATGCAT	2 cut(s)	369, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.