Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010511

Physical Location & Seq

Genomic Coordinates Forward (+)

3751381 .. 3754022

Gene Structure 2642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07100.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGACAGGAACTGTGGTGGTTTTTGACTTCGACCGGACCCTGATCAACGATGACAGCGATAGATGGGTGGTGACGGAGATGGGTCTCAAACAGGTCTTCAATGAGCTTCGTTCTACTTTGCCATGGAACTCACTCATGGATAGAATGATGATGGAGCTTCATTTGCAAGGAAAGACTACTGAGGACATTAAAGAGTGCCTCAAAAGAACTCCAATGCATCCACTAGTAGTTGCAGCTATTAAGTCAGCTCATGCTTTGGGATGTGACTTGAAGATAATTAGTGATGCAAATCAGTTTTTCATTGAGTCGATCTTGGAATGCCATGGCCTGTTGGGATGCTTCTCGCAGATCGTCACAAACCCAACCTCTGTAGATGGTGATGGAAGACTGAGAATTTCTCCTTACCATGATCCAGTCTCATCTTCTCATGGTTGCAATTTTTGCCCCTCAAATATGTGCAAGGGTCAGGTGATTGATCAATTTTTAGCTTCGGCTTCTGAAAATGGGAGGAAGAGATACATCTACCTTGGAGATGGGAGAAACGATTTTTGCCCAACTCTGAAACTAGTAGAGGGAGACCATGTAATGCCAAGGAAGGAGTATCCTCTATGGGATCGCATCTGCAGTAACCGAATGCTTATCAATGCAGATATCCATGAATGGACTGATGGAGAGGAGCTTGCTAAGATACTACTTCAGCTTATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004427 GO:0006725 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0034641 GO:0042131 GO:0042357 GO:0042578 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0046483 GO:0051186 GO:0051188 GO:0051259 GO:0051262 GO:0065003 GO:0071704 GO:0071840 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

237

Amino Acids

26.76

Weight (kDa)

5.46

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 235	3.2e-93	Putative Phosphatase
HAD	PF12710	6 - 183	1.5e-07	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29530 AT4G29530
fragaria_vesca	FvH4_1g07100 FvH4_1g07100
malus_domestica	MD15G1204200.v1.1
prunus_persica	Prupe.7G213000_v2.0.a1
pyrus_communis	pycom15g18100
rosa_chinensis	RchiOBHm_Chr2g0092991 RchiOBHm_Chr5g0041441
rosa_laevigata	RLG00000016356
rosa_multiflora	Rmu_co8483593.1_g000001 Rmu_sc0000965.1_g000020
rosa_roxburghii	Rroxscaffold_1G00039130 Rroxscaffold_2G00148640
rosa_rugosa	Rorug02G0031100 Rorug02G0031200
rosa_samantha	Rh2AG077000 Rh2BG078400 Rh2CG080600 Rh2DG075700
rosa_wichuraiana	Rw2G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	404, 621
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	680
AgsI	TTSAA	2 cut(s)	100, 271
AhlI	ACTAGT	2 cut(s)	223, 565
AluBI	AGCT	7 cut(s)	106, 157, 236, 248, 488, 679, 700
AluI	AGCT	7 cut(s)	106, 157, 236, 248, 488, 679, 700
Alw26I	GTCTC	3 cut(s)	89, 421, 570
AlwI	GGATC	2 cut(s)	404, 621
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	82, 389, 481
AvaII	GGWCC	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	88, 391
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	7 cut(s)	57, 73, 145, 368, 374, 527, 662
BciVI	GTATCC	1 cut(s)	612
BclI	TGATCA	2 cut(s)	42, 475
BcoDI	GTCTC	3 cut(s)	89, 421, 570
BcuI	ACTAGT	2 cut(s)	223, 565
BfaI	CTAG	2 cut(s)	224, 566
BfmI	CTRYAG	2 cut(s)	369, 622
BfuI	GTATCC	1 cut(s)	612
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	38
BmsI	GCATC	4 cut(s)	226, 274, 326, 627
BpiI	GAAGAC	2 cut(s)	88, 391
BplI	GAGNNNNNCTC	2 cut(s)	382, 414
BsaBI	GATNNNNATC	1 cut(s)	288
BsaI	GGTCTC	2 cut(s)	89, 570
BsaJI	CCNNGG	4 cut(s)	122, 322, 526, 590
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bse1I	ACTGG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	4 cut(s)	122, 322, 526, 590
BseGI	GGATG	3 cut(s)	217, 266, 341
BseJI	GATNNNNATC	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	171, 380
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	34
BsmAI	GTCTC	3 cut(s)	89, 421, 570
BsmI	GAATGC	2 cut(s)	323, 639
BsnI	GGCC	1 cut(s)	327
Bso31I	GGTCTC	2 cut(s)	89, 570
Bsp143I	GATC	6 cut(s)	42, 309, 348, 409, 475, 613
Bsp19I	CCATGG	2 cut(s)	122, 322
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	2 cut(s)	172, 381
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	626
BspPI	GGATC	2 cut(s)	404, 621
BspTNI	GGTCTC	2 cut(s)	89, 570
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	4 cut(s)	122, 322, 526, 590
BssMI	GATC	6 cut(s)	42, 309, 348, 409, 475, 613
BssT1I	CCWWGG	4 cut(s)	122, 322, 526, 590
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	506
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	3 cut(s)	180, 389, 684
BstDSI	CCRYGG	2 cut(s)	122, 322
BstF5I	GGATG	3 cut(s)	217, 266, 341
BstKTI	GATC	6 cut(s)	45, 312, 351, 412, 478, 616
BstMAI	GTCTC	3 cut(s)	89, 421, 570
BstMBI	GATC	6 cut(s)	42, 309, 348, 409, 475, 613
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 441
BstSFI	CTRYAG	2 cut(s)	369, 622
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	2 cut(s)	88, 391
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	327
BtgI	CCRYGG	2 cut(s)	122, 322
BtsCI	GGATG	3 cut(s)	217, 266, 341
Cac8I	GCNNGC	1 cut(s)	681
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	36
CviAII	CATG	8 cut(s)	123, 136, 251, 323, 407, 428, 581, 656
CviJI	RGCY	9 cut(s)	106, 157, 236, 248, 327, 488, 494, 679, 700
CviKI_1	RGCY	9 cut(s)	106, 157, 236, 248, 327, 488, 494, 679, 700
DdeI	CTNAG	3 cut(s)	180, 389, 684
DpnI	GATC	6 cut(s)	44, 311, 350, 411, 477, 615
DpnII	GATC	6 cut(s)	42, 309, 348, 409, 475, 613
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
Eco130I	CCWWGG	4 cut(s)	122, 322, 526, 590
Eco31I	GGTCTC	2 cut(s)	89, 570
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	680
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	4 cut(s)	122, 322, 526, 590
EcoT22I	ATGCAT	1 cut(s)	219
ErhI	CCWWGG	4 cut(s)	122, 322, 526, 590
FaeI	CATG	8 cut(s)	126, 139, 254, 326, 410, 431, 584, 659
FatI	CATG	8 cut(s)	122, 135, 250, 322, 406, 427, 580, 655
FbaI	TGATCA	2 cut(s)	42, 475
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	3 cut(s)	204, 273, 348
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	224, 566
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	8 cut(s)	126, 139, 254, 326, 410, 431, 584, 659
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	3 cut(s)	82, 389, 481
Hpy188I	TCNGA	2 cut(s)	499, 561
HpyAV	CCTTC	1 cut(s)	589
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	8 cut(s)	166, 217, 233, 287, 435, 459, 624, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 441
HpyF3I	CTNAG	3 cut(s)	180, 389, 684
Hsp92II	CATG	8 cut(s)	126, 139, 254, 326, 410, 431, 584, 659
Ksp22I	TGATCA	2 cut(s)	42, 475
Kzo9I	GATC	6 cut(s)	42, 309, 348, 409, 475, 613
LmnI	GCTCC	2 cut(s)	154, 676
LpnPI	CCDG	6 cut(s)	47, 53, 77, 341, 426, 452
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	4 cut(s)	226, 274, 326, 627
MaeI	CTAG	2 cut(s)	224, 566
MaeIII	GTNAC	4 cut(s)	70, 263, 352, 626
MalI	GATC	6 cut(s)	44, 311, 350, 411, 477, 615
MboI	GATC	6 cut(s)	42, 309, 348, 409, 475, 613
MboII	GAAGA	5 cut(s)	88, 283, 396, 414, 523
MluCI	AATT	4 cut(s)	276, 393, 436, 479
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	8 cut(s)	175, 209, 376, 457, 501, 565, 615, 667
Mph1103I	ATGCAT	1 cut(s)	219
MseI	TTAA	2 cut(s)	189, 240
MspI	CCGG	1 cut(s)	34
Mva1269I	GAATGC	2 cut(s)	323, 639
MwoI	GCNNNNNNNGC	2 cut(s)	163, 441
NcoI	CCATGG	2 cut(s)	122, 322
NdeII	GATC	6 cut(s)	42, 309, 348, 409, 475, 613
NlaIII	CATG	8 cut(s)	126, 139, 254, 326, 410, 431, 584, 659
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	3 cut(s)	70, 263, 352
NsiI	ATGCAT	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	2 cut(s)	323, 639
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	626
PstNI	CAGNNNCTG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	189, 240
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	6 cut(s)	42, 309, 348, 409, 475, 613
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	314
SfaNI	GCATC	4 cut(s)	226, 274, 326, 627
SfcI	CTRYAG	2 cut(s)	369, 622
SinI	GGWCC	1 cut(s)	36
SpeI	ACTAGT	2 cut(s)	223, 565
Sse9I	AATT	4 cut(s)	276, 393, 436, 479
SspMI	CTAG	2 cut(s)	224, 566
StyI	CCWWGG	4 cut(s)	122, 322, 526, 590
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	30, 308
TasI	AATT	4 cut(s)	276, 393, 436, 479
Tru1I	TTAA	2 cut(s)	189, 240
Tru9I	TTAA	2 cut(s)	189, 240
TseFI	GTSAC	3 cut(s)	70, 263, 352
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	3 cut(s)	70, 263, 352
TspDTI	ATGAA	3 cut(s)	149, 289, 672
TspGWI	ACGGA	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	393
XspI	CTAG	2 cut(s)	224, 566
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.