Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010511

Physical Location & Seq

Genomic Coordinates Forward (+)

6463470 .. 6465231

Gene Structure 1762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG077000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACGGGAACAGTGGTGGTTTTTGACTTCGACCGGACCCTGATCGACGATGACACCGATCGATGGGTGGTGACGGAGATGGGTCTCACCCAGCTCTTCAATGAGCTTCGTCGCTGCTCTACCATGACATGGAACTCTCTCATGGATAGAATGATGATGGAGCTTCATTTGCAAGGAAAGACCTCTGAGGACATTAAAGAGTGCCTCAAAAGAACTCCAATGCATCCACAAGTAGCTGCGGCTATTAAGTCAGCTCATGCTTCAGGATGTGACTTGAAGATAATTAGTGATGCAAATCAGTTTTTCATTGAGTCAATCTTGGAATGCCATGGCCTGTTGGGATGCTTCTCACAGATCATCACAAACCCAACGTCTGTAGATAGAGATGGAAGACTGAGAATCTTTCCTTACCATGATCCAGTCTCATCTTCTCATGGTTGCGATCTTTGCCCTTCAAATATGTGCAAGGGTCAGGTGATTGATCAATTTTTAGCTTCTGCTTCTGAAAATGGGAGGAAGAGATACATCTACCTTGGAGATGGGAGAAACGATTTTTGCCCAACTCTGAAACTAGTAGAGGGAGACCATGTAATGCCAAGGAAGGACTATCCTCTATGGGATCGCATTTGCAGCAACCGAATGCTTATCAAGGCTGATATCCATAAATGGAGTGATAGAGAGGAGCTTGCTAAGATACTACTTCAGCTTATCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004427 GO:0006725 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0034641 GO:0042131 GO:0042357 GO:0042578 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0046483 GO:0051186 GO:0051188 GO:0051259 GO:0051262 GO:0065003 GO:0071704 GO:0071840 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

238

Amino Acids

27.22

Weight (kDa)

5.9

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 237	1.3e-91	Putative Phosphatase
HAD	PF12710	6 - 185	4.6e-10	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29530 AT4G29530
fragaria_vesca	FvH4_1g07100 FvH4_1g07100
malus_domestica	MD15G1204200.v1.1
prunus_persica	Prupe.7G213000_v2.0.a1
pyrus_communis	pycom15g18100
rosa_chinensis	RchiOBHm_Chr2g0092991 RchiOBHm_Chr5g0041441
rosa_laevigata	RLG00000016356
rosa_multiflora	Rmu_co8483593.1_g000001 Rmu_sc0000965.1_g000020
rosa_roxburghii	Rroxscaffold_1G00039130 Rroxscaffold_2G00148640
rosa_rugosa	Rorug02G0031100 Rorug02G0031200
rosa_samantha	Rh2AG077000 Rh2BG078400 Rh2CG080600 Rh2DG075700
rosa_wichuraiana	Rw2G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	129
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	2 cut(s)	410, 627
AcuI	CTGAAG	2 cut(s)	246, 686
AfiI	CCNNNNNNNGG	2 cut(s)	63, 129
AgsI	TTSAA	3 cut(s)	100, 277, 456
AhlI	ACTAGT	1 cut(s)	571
AluBI	AGCT	8 cut(s)	94, 106, 163, 236, 254, 494, 685, 706
AluI	AGCT	8 cut(s)	94, 106, 163, 236, 254, 494, 685, 706
Alw26I	GTCTC	3 cut(s)	89, 427, 576
AlwI	GGATC	2 cut(s)	410, 627
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	3 cut(s)	114, 236, 630
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	79, 82, 487
AvaII	GGWCC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	101, 223, 642
BccI	CCATC	5 cut(s)	57, 73, 151, 380, 533
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	3 cut(s)	89, 427, 576
BcuI	ACTAGT	1 cut(s)	571
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	4 cut(s)	115, 237, 240, 631
BlsI	GCNGC	4 cut(s)	116, 238, 241, 632
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	38
BmsI	GCATC	3 cut(s)	232, 280, 332
BpiI	GAAGAC	1 cut(s)	397
Bsa29I	ATCGAT	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	294
BsaI	GGTCTC	2 cut(s)	89, 576
BsaJI	CCNNGG	3 cut(s)	328, 532, 596
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 129
Bse1I	ACTGG	2 cut(s)	419, 712
Bse8I	GATNNNNATC	1 cut(s)	294
BseCI	ATCGAT	1 cut(s)	61
BseDI	CCNNGG	3 cut(s)	328, 532, 596
BseGI	GGATG	3 cut(s)	223, 272, 347
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	63, 129
BseMII	CTCAG	2 cut(s)	177, 386
BseNI	ACTGG	2 cut(s)	419, 712
BseRI	GAGGAG	1 cut(s)	695
BseXI	GCAGC	3 cut(s)	101, 223, 642
BseYI	CCCAGC	1 cut(s)	90
Bsh1285I	CGRYCG	2 cut(s)	34, 61
BshFI	GGCC	1 cut(s)	333
BshVI	ATCGAT	1 cut(s)	61
BsiEI	CGRYCG	2 cut(s)	34, 61
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	63, 129
BsmAI	GTCTC	3 cut(s)	89, 427, 576
BsmI	GAATGC	2 cut(s)	329, 645
BsnI	GGCC	1 cut(s)	333
Bso31I	GGTCTC	2 cut(s)	89, 576
Bsp143I	GATC	7 cut(s)	42, 58, 354, 415, 442, 481, 619
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	2 cut(s)	178, 387
BspDI	ATCGAT	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	410, 627
BspQI	GCTCTTC	1 cut(s)	101
BspTNI	GGTCTC	2 cut(s)	89, 576
BsrI	ACTGG	2 cut(s)	419, 712
BssECI	CCNNGG	3 cut(s)	328, 532, 596
BssMI	GATC	7 cut(s)	42, 58, 354, 415, 442, 481, 619
BssT1I	CCWWGG	3 cut(s)	328, 532, 596
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	2 cut(s)	101, 512
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	3 cut(s)	186, 395, 690
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	3 cut(s)	223, 272, 347
BstKTI	GATC	7 cut(s)	45, 61, 357, 418, 445, 484, 622
BstMAI	GTCTC	3 cut(s)	89, 427, 576
BstMBI	GATC	7 cut(s)	42, 58, 354, 415, 442, 481, 619
BstMCI	CGRYCG	2 cut(s)	34, 61
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 447, 630
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	3 cut(s)	101, 223, 642
BstV2I	GAAGAC	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	333
BsuTUI	ATCGAT	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	3 cut(s)	223, 272, 347
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	687
Cfr13I	GGNCC	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	61
CviAII	CATG	8 cut(s)	124, 129, 142, 257, 329, 413, 434, 587
DdeI	CTNAG	3 cut(s)	186, 395, 690
DpnI	GATC	7 cut(s)	44, 60, 356, 417, 444, 483, 621
DpnII	GATC	7 cut(s)	42, 58, 354, 415, 442, 481, 619
Eam1104I	CTCTTC	2 cut(s)	101, 512
EarI	CTCTTC	2 cut(s)	101, 512
Eco130I	CCWWGG	3 cut(s)	328, 532, 596
Eco31I	GGTCTC	2 cut(s)	89, 576
Eco32I	GATATC	1 cut(s)	658
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	246, 686
EcoRV	GATATC	1 cut(s)	658
EcoT14I	CCWWGG	3 cut(s)	328, 532, 596
EcoT22I	ATGCAT	1 cut(s)	225
ErhI	CCWWGG	3 cut(s)	328, 532, 596
FaeI	CATG	8 cut(s)	127, 132, 145, 260, 332, 416, 437, 590
FatI	CATG	8 cut(s)	123, 128, 141, 256, 328, 412, 433, 586
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	4 cut(s)	115, 237, 240, 631
FokI	GGATG	3 cut(s)	210, 279, 354
Fsp4HI	GCNGC	4 cut(s)	115, 237, 240, 631
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	4 cut(s)	115, 237, 240, 631
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	8 cut(s)	127, 132, 145, 260, 332, 416, 437, 590
HinfI	GANTC	2 cut(s)	311, 399
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	3 cut(s)	79, 82, 487
Hpy188I	TCNGA	3 cut(s)	187, 505, 567
Hpy188III	TCNNGA	1 cut(s)	264
Hpy99I	CGWCG	2 cut(s)	50, 114
HpyAV	CCTTC	2 cut(s)	462, 595
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	5 cut(s)	172, 223, 293, 465, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 447, 630
HpyF3I	CTNAG	3 cut(s)	186, 395, 690
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	8 cut(s)	127, 132, 145, 260, 332, 416, 437, 590
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	7 cut(s)	42, 58, 354, 415, 442, 481, 619
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	160, 682
LpnPI	CCDG	7 cut(s)	47, 53, 104, 249, 347, 432, 458
Lsp1109I	GCAGC	3 cut(s)	101, 223, 642
LweI	GCATC	3 cut(s)	232, 280, 332
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	70, 269
MalI	GATC	7 cut(s)	44, 60, 356, 417, 444, 483, 621
MboI	GATC	7 cut(s)	42, 58, 354, 415, 442, 481, 619
MboII	GAAGA	5 cut(s)	88, 289, 402, 420, 529
MluCI	AATT	2 cut(s)	282, 485
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	7 cut(s)	181, 193, 215, 507, 571, 621, 673
Mph1103I	ATGCAT	1 cut(s)	225
MseI	TTAA	2 cut(s)	195, 246
MspI	CCGG	1 cut(s)	34
Mva1269I	GAATGC	2 cut(s)	329, 645
MwoI	GCNNNNNNNGC	3 cut(s)	169, 447, 630
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	7 cut(s)	42, 58, 354, 415, 442, 481, 619
NlaIII	CATG	8 cut(s)	127, 132, 145, 260, 332, 416, 437, 590
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	2 cut(s)	70, 269
NsiI	ATGCAT	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	2 cut(s)	329, 645
PfeI	GAWTC	1 cut(s)	399
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	116, 238, 241, 632
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	36
PvuI	CGATCG	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	195, 246
SatI	GCNGC	4 cut(s)	115, 237, 240, 631
Sau3AI	GATC	7 cut(s)	42, 58, 354, 415, 442, 481, 619
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	320
SfaNI	GCATC	3 cut(s)	232, 280, 332
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	36
SpeI	ACTAGT	1 cut(s)	571
Sse9I	AATT	2 cut(s)	282, 485
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	572
StyI	CCWWGG	3 cut(s)	328, 532, 596
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	3 cut(s)	30, 45, 61
TasI	AATT	2 cut(s)	282, 485
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	2 cut(s)	195, 246
Tru9I	TTAA	2 cut(s)	195, 246
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	2 cut(s)	70, 269
TseI	GCWGC	3 cut(s)	114, 236, 630
Tsp45I	GTSAC	2 cut(s)	70, 269
TspDTI	ATGAA	2 cut(s)	155, 295
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	36
XspI	CTAG	1 cut(s)	572
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.