Rroxscaffold_1G00039130

Inorganic pyrophosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010511
Physical Location & Seq
Forward (+)
56665213 .. 56665614
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039130.1

Sequence Viewer

Length: 402 bp
ATGCATCCACAAGTAGCTACAGCTATTAAGTCAGCTCATGCTTCAGGATGTGACTTAAAGATAATTAGTGATGCAAATCAGTTTTTCATTGAGTCAATCTTGGAATGTCGTGGCCTGTTGGTATGCTTCTTACAGATCATCACAAACCCAACATCTGTAGATGGAGATGGAAGACTGAGAATCTTTCCTTACCATGATCCAGTCTCATCTTCTCATGGTTGCAATCTTTGCCCTTCAAATATGTGCAAGGGTCAGGTGATAGACCAATTTTTAGCGTCTGCTTCTGAAAATGGGAGGAAGAGATACATCTACCTTGGAGATGGGAGAAACTACGATTTTTGCCCAACTCTGAAACTAGTAGAGGGAGACCATGTAACACCAAGGAAGGACTGTCCTCTATGA

Protein Analysis

133

Amino Acids

14.67

Weight (kDa)

6.49

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Put_Phosphatase PF06888 2 - 132 3.5e-46 Putative Phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 27
AgsI TTSAA 1 cut(s) 237
AhlI ACTAGT 1 cut(s) 355
AluBI AGCT 3 cut(s) 17, 23, 35
AluI AGCT 3 cut(s) 17, 23, 35
Alw26I GTCTC 2 cut(s) 208, 360
AlwI GGATC 1 cut(s) 191
AoxI GGCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 178
BccI CCATC 3 cut(s) 155, 161, 314
BcoDI GTCTC 2 cut(s) 208, 360
BcuI ACTAGT 1 cut(s) 355
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 2 cut(s) 18, 156
BmsI GCATC 2 cut(s) 13, 61
BpiI GAAGAC 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 313, 380
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bse1I ACTGG 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 75
BseDI CCNNGG 2 cut(s) 313, 380
BseGI GGATG 2 cut(s) 4, 53
BseJI GATNNNNATC 1 cut(s) 75
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 200
BshFI GGCC 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 208, 360
BsnI GGCC 1 cut(s) 114
Bso31I GGTCTC 1 cut(s) 360
Bsp143I GATC 2 cut(s) 135, 196
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 168
BspPI GGATC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 360
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 313, 380
BssMI GATC 2 cut(s) 135, 196
BssT1I CCWWGG 2 cut(s) 313, 380
Bst4CI ACNGT 1 cut(s) 392
Bst6I CTCTTC 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 2 cut(s) 4, 53
BstKTI GATC 2 cut(s) 138, 199
BstMAI GTCTC 2 cut(s) 208, 360
BstMBI GATC 2 cut(s) 135, 196
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstSFI CTRYAG 2 cut(s) 18, 156
BstV2I GAAGAC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 4, 53
CseI GACGC 1 cut(s) 264
CviAII CATG 4 cut(s) 38, 194, 215, 371
CviJI RGCY 4 cut(s) 17, 23, 35, 114
CviKI_1 RGCY 4 cut(s) 17, 23, 35, 114
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 137, 198
DpnII GATC 2 cut(s) 135, 196
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco130I CCWWGG 2 cut(s) 313, 380
Eco31I GGTCTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 313, 380
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 313, 380
FaeI CATG 4 cut(s) 41, 197, 218, 374
FaiI YATR 7 cut(s) 39, 124, 195, 216, 242, 372, 400
FatI CATG 4 cut(s) 37, 193, 214, 370
FokI GGATG 1 cut(s) 60
FspBI CTAG 1 cut(s) 356
HaeIII GGCC 1 cut(s) 114
HgaI GACGC 1 cut(s) 264
Hin1II CATG 4 cut(s) 41, 197, 218, 374
HinfI GANTC 2 cut(s) 92, 180
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 2 cut(s) 286, 351
Hpy188III TCNNGA 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 243, 379
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 4 cut(s) 4, 74, 222, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 4 cut(s) 41, 197, 218, 374
Kzo9I GATC 2 cut(s) 135, 196
LpnPI CCDG 4 cut(s) 30, 128, 213, 239
LweI GCATC 2 cut(s) 13, 61
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 50, 373
MalI GATC 2 cut(s) 137, 198
MboI GATC 2 cut(s) 135, 196
MboII GAAGA 3 cut(s) 183, 201, 310
MluCI AATT 2 cut(s) 63, 266
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 2 cut(s) 288, 355
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 27, 56
MwoI GCNNNNNNNGC 1 cut(s) 228
NdeII GATC 2 cut(s) 135, 196
NlaIII CATG 4 cut(s) 41, 197, 218, 374
NmuCI GTSAC 1 cut(s) 50
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 180
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 27, 56
Sau3AI GATC 2 cut(s) 135, 196
SchI GAGTC 1 cut(s) 101
SetI ASST 5 cut(s) 19, 25, 37, 258, 315
SfaNI GCATC 2 cut(s) 13, 61
SfcI CTRYAG 2 cut(s) 18, 156
SpeI ACTAGT 1 cut(s) 355
Sse9I AATT 2 cut(s) 63, 266
SspMI CTAG 1 cut(s) 356
StyI CCWWGG 2 cut(s) 313, 380
TaaI ACNGT 1 cut(s) 392
TasI AATT 2 cut(s) 63, 266
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 27, 56
Tru9I TTAA 2 cut(s) 27, 56
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 76
XspI CTAG 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.