Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8483593.1

Orthogroup ID

OG0010511

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1919

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8483593.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 775 bp

ggctgttacagtgaaaactggtttctgggtcgaaagaaaaccacctccggcgcttagaatgacgggaacagtggtggtttttgacttcgaccggaccctgatcgacgatgacaccgatcgatgggtggtgacggagatgggtctcacccagctcttcaatgagcttcgtcgctgctctaccatgacatggaactcactcatggatagaatgatgatggagcttcatttgcaaggaaagacctctgaggacattaaagagtgcctcaaaagaactccaatgcatccacaagtagctgcggctattaagtcagctcatgcttcaggatgtgacttgaagataattagtgatgcaaatcagtttttcattgagtcaatcttggaatgccatggcctgttgggatgcttctcacagatcatcacaaacccaacgtctgtagatagagatggaagactgagaatctttccttaccatgatccagtctcatcttctcatggttgcgatctttgcccttcaaatatgtgcaagggtcaggtgattgatcaatttttagcttctgcttctgaaaatgggaggaagagatacatctaccttggagatgggagaaacgatttttgcccaactctgaaactagtagagggagaccatgtaatgccaaggaaggactatcctctatgggatcgcatttgcagcaaccgaatgcttatcaaggctgatatccataaatggagtgatagagaggagcttgctaagatactacttcagcttatccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004427 GO:0006725 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0034641 GO:0042131 GO:0042357 GO:0042578 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0046483 GO:0051186 GO:0051188 GO:0051259 GO:0051262 GO:0065003 GO:0071704 GO:0071840 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

257

Amino Acids

29.35

Weight (kDa)

6.48

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29530 AT4G29530
fragaria_vesca	FvH4_1g07100 FvH4_1g07100
malus_domestica	MD15G1204200.v1.1
prunus_persica	Prupe.7G213000_v2.0.a1
pyrus_communis	pycom15g18100
rosa_chinensis	RchiOBHm_Chr2g0092991 RchiOBHm_Chr5g0041441
rosa_laevigata	RLG00000016356
rosa_multiflora	Rmu_co8483593.1_g000001 Rmu_sc0000965.1_g000020
rosa_roxburghii	Rroxscaffold_1G00039130 Rroxscaffold_2G00148640
rosa_rugosa	Rorug02G0031100 Rorug02G0031200
rosa_samantha	Rh2AG077000 Rh2BG078400 Rh2CG080600 Rh2DG075700
rosa_wichuraiana	Rw2G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	187
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	2 cut(s)	468, 685
AcuI	CTGAAG	2 cut(s)	304, 744
AfiI	CCNNNNNNNGG	2 cut(s)	121, 187
AgsI	TTSAA	3 cut(s)	158, 335, 514
AhlI	ACTAGT	1 cut(s)	629
AluBI	AGCT	8 cut(s)	152, 164, 221, 294, 312, 552, 743, 764
AluI	AGCT	8 cut(s)	152, 164, 221, 294, 312, 552, 743, 764
Alw26I	GTCTC	3 cut(s)	147, 485, 634
AlwI	GGATC	2 cut(s)	468, 685
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	3 cut(s)	172, 294, 688
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	137, 140, 545
AvaII	GGWCC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	159, 281, 700
BccI	CCATC	5 cut(s)	115, 131, 209, 438, 591
BclI	TGATCA	1 cut(s)	539
BcoDI	GTCTC	3 cut(s)	147, 485, 634
BcuI	ACTAGT	1 cut(s)	629
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	1 cut(s)	433
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	4 cut(s)	173, 295, 298, 689
BlsI	GCNGC	4 cut(s)	174, 296, 299, 690
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	96
BmsI	GCATC	3 cut(s)	290, 338, 390
BpiI	GAAGAC	1 cut(s)	455
Bsa29I	ATCGAT	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	352
BsaI	GGTCTC	2 cut(s)	147, 634
BsaJI	CCNNGG	3 cut(s)	386, 590, 654
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 187
Bse1I	ACTGG	3 cut(s)	23, 477, 770
Bse8I	GATNNNNATC	1 cut(s)	352
BseCI	ATCGAT	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	386, 590, 654
BseGI	GGATG	3 cut(s)	281, 330, 405
BseJI	GATNNNNATC	1 cut(s)	352
BseLI	CCNNNNNNNGG	2 cut(s)	121, 187
BseMII	CTCAG	2 cut(s)	235, 444
BseNI	ACTGG	3 cut(s)	23, 477, 770
BseRI	GAGGAG	1 cut(s)	753
BseXI	GCAGC	3 cut(s)	159, 281, 700
BseYI	CCCAGC	1 cut(s)	148
Bsh1285I	CGRYCG	2 cut(s)	92, 119
BshFI	GGCC	1 cut(s)	391
BshVI	ATCGAT	1 cut(s)	119
BsiEI	CGRYCG	2 cut(s)	92, 119
BsiSI	CCGG	2 cut(s)	48, 92
BslI	CCNNNNNNNGG	2 cut(s)	121, 187
BsmAI	GTCTC	3 cut(s)	147, 485, 634
BsmI	GAATGC	2 cut(s)	387, 703
BsnI	GGCC	1 cut(s)	391
Bso31I	GGTCTC	2 cut(s)	147, 634
Bsp143I	GATC	7 cut(s)	100, 116, 412, 473, 500, 539, 677
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	2 cut(s)	236, 445
BspDI	ATCGAT	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	468, 685
BspQI	GCTCTTC	1 cut(s)	159
BspTNI	GGTCTC	2 cut(s)	147, 634
BsrI	ACTGG	3 cut(s)	23, 477, 770
BssECI	CCNNGG	3 cut(s)	386, 590, 654
BssMI	GATC	7 cut(s)	100, 116, 412, 473, 500, 539, 677
BssT1I	CCWWGG	3 cut(s)	386, 590, 654
Bst4CI	ACNGT	2 cut(s)	11, 71
Bst6I	CTCTTC	2 cut(s)	159, 570
BstC8I	GCNNGC	1 cut(s)	745
BstDEI	CTNAG	4 cut(s)	54, 244, 453, 748
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	3 cut(s)	281, 330, 405
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	7 cut(s)	103, 119, 415, 476, 503, 542, 680
BstMAI	GTCTC	3 cut(s)	147, 485, 634
BstMBI	GATC	7 cut(s)	100, 116, 412, 473, 500, 539, 677
BstMCI	CGRYCG	2 cut(s)	92, 119
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 505, 688
BstSFI	CTRYAG	1 cut(s)	433
BstV1I	GCAGC	3 cut(s)	159, 281, 700
BstV2I	GAAGAC	1 cut(s)	455
Bsu15I	ATCGAT	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	391
BsuTUI	ATCGAT	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	3 cut(s)	281, 330, 405
BtsIMutI	CAGTG	2 cut(s)	16, 76
Cac8I	GCNNGC	1 cut(s)	745
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	119
CviAII	CATG	8 cut(s)	182, 187, 200, 315, 387, 471, 492, 645
DdeI	CTNAG	4 cut(s)	54, 244, 453, 748
DpnI	GATC	7 cut(s)	102, 118, 414, 475, 502, 541, 679
DpnII	GATC	7 cut(s)	100, 116, 412, 473, 500, 539, 677
Eam1104I	CTCTTC	2 cut(s)	159, 570
EarI	CTCTTC	2 cut(s)	159, 570
Eco130I	CCWWGG	3 cut(s)	386, 590, 654
Eco31I	GGTCTC	2 cut(s)	147, 634
Eco32I	GATATC	1 cut(s)	716
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	304, 744
EcoRV	GATATC	1 cut(s)	716
EcoT14I	CCWWGG	3 cut(s)	386, 590, 654
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	3 cut(s)	386, 590, 654
FaeI	CATG	8 cut(s)	185, 190, 203, 318, 390, 474, 495, 648
FatI	CATG	8 cut(s)	181, 186, 199, 314, 386, 470, 491, 644
FbaI	TGATCA	1 cut(s)	539
Fnu4HI	GCNGC	4 cut(s)	173, 295, 298, 689
FokI	GGATG	3 cut(s)	268, 337, 412
Fsp4HI	GCNGC	4 cut(s)	173, 295, 298, 689
FspBI	CTAG	1 cut(s)	630
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	4 cut(s)	173, 295, 298, 689
GsaI	CCCAGC	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	2 cut(s)	48, 92
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	8 cut(s)	185, 190, 203, 318, 390, 474, 495, 648
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	2 cut(s)	369, 457
HpaII	CCGG	2 cut(s)	48, 92
HphI	GGTGA	3 cut(s)	137, 140, 545
Hpy188I	TCNGA	3 cut(s)	245, 563, 625
Hpy188III	TCNNGA	1 cut(s)	322
Hpy99I	CGWCG	2 cut(s)	108, 172
HpyAV	CCTTC	2 cut(s)	520, 653
HpyCH4III	ACNGT	2 cut(s)	11, 71
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	5 cut(s)	230, 281, 351, 523, 688
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 505, 688
HpyF3I	CTNAG	4 cut(s)	54, 244, 453, 748
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	8 cut(s)	185, 190, 203, 318, 390, 474, 495, 648
HspAI	GCGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	539
Kzo9I	GATC	7 cut(s)	100, 116, 412, 473, 500, 539, 677
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	218, 740
Lsp1109I	GCAGC	3 cut(s)	159, 281, 700
LweI	GCATC	3 cut(s)	290, 338, 390
MaeI	CTAG	1 cut(s)	630
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	3 cut(s)	5, 128, 327
MalI	GATC	7 cut(s)	102, 118, 414, 475, 502, 541, 679
MboI	GATC	7 cut(s)	100, 116, 412, 473, 500, 539, 677
MboII	GAAGA	5 cut(s)	146, 347, 460, 478, 587
MluCI	AATT	2 cut(s)	340, 543
MlyI	GAGTC	1 cut(s)	378
MnlI	CCTC	8 cut(s)	55, 239, 251, 273, 565, 629, 679, 731
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	2 cut(s)	253, 304
MspI	CCGG	2 cut(s)	48, 92
Mva1269I	GAATGC	2 cut(s)	387, 703
MwoI	GCNNNNNNNGC	3 cut(s)	227, 505, 688
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	7 cut(s)	100, 116, 412, 473, 500, 539, 677
NlaIII	CATG	8 cut(s)	185, 190, 203, 318, 390, 474, 495, 648
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	128, 327
NsiI	ATGCAT	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PctI	GAATGC	2 cut(s)	387, 703
PfeI	GAWTC	1 cut(s)	457
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	174, 296, 299, 690
Ple19I	CGATCG	1 cut(s)	119
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	94
PvuI	CGATCG	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	253, 304
SatI	GCNGC	4 cut(s)	173, 295, 298, 689
Sau3AI	GATC	7 cut(s)	100, 116, 412, 473, 500, 539, 677
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	378
SfaNI	GCATC	3 cut(s)	290, 338, 390
SfcI	CTRYAG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	94
SpeI	ACTAGT	1 cut(s)	629
Sse9I	AATT	2 cut(s)	340, 543
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	1 cut(s)	630
StyI	CCWWGG	3 cut(s)	386, 590, 654
TaaI	ACNGT	2 cut(s)	11, 71
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	4 cut(s)	31, 88, 103, 119
TasI	AATT	2 cut(s)	340, 543
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	253, 304
Tru9I	TTAA	2 cut(s)	253, 304
TscAI	CASTG	2 cut(s)	16, 76
TseFI	GTSAC	2 cut(s)	128, 327
TseI	GCWGC	3 cut(s)	172, 294, 688
Tsp45I	GTSAC	2 cut(s)	128, 327
TspDTI	ATGAA	2 cut(s)	213, 353
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	16, 76
Van91I	CCANNNNNTGG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	94
XspI	CTAG	1 cut(s)	630
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.