AT4G30230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015341
Physical Location & Seq
Forward (+)
14806251 .. 14807425
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30230.1

Sequence Viewer

Length: 783 bp
ATGGAAACTACAAAAAACACTAATCTCCAAAACCCTACTAAACTCCCAAAACCATTTCAACATCACCTAGAAGAAGAAAAAGAAGACGCACTATCTCTCCGAGATCTTCCCCTCAAAGCCAAGAATCCTAATCCCACCACCACCGAAGACCACAAAGAACCGTCAACGGAACTTTTTGAGTTTCTAACCTCATCCTCCTACGACGTAGCTCCGGCAGAAAATATAATCTTTGGCGGGAAACTCATCCCTTTAAACTACCAAAATGCTTTCTTTTCACCTCCTGAGCACATTAGCCGTCGAATCCGTTCACGGTCTGAGTCCTTATCCGCGATACAAGGCCATAAGCTTAACCGTCCCGGTAGTTGTACCGTGGCACGTCGTGACAATGCGGGACCTATGAGGGCAAGCCGCTCTTTAGATTATCGTAAGCTTTCACGTGGTCTAACCACCGTACATTCTCCACCGGAAAATAGTTCATCGACTAAAAACACGGGGAAGCCTGAAACAACGTCTTCGGGAAGTGTAAAAAGTGTAAGGCCAAGATGGTATGTGATCATGTTTGGAATGGTTAAGTTTCCGCCGGAGATCGAACTCAAGGATATAAAGAGCCGTCAGATTCGCCGGAATATTCCACCGGTTATGTTTCCATCTCCTGCTAACAGGAGAGCTCGTGGATCTCGGTCGCCATCACCGTCACCTTCTTGGAGGTTTCTCAACGCTTTAAGTTGCAAGAAGCCCACAAGCGTGGCTGCTACGGCGCCGTTTTGGGTTCCTCATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.18

Weight (kDa)

10.22

Isoelectric Point (pI)

82.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30230
fragaria_vesca FvH4_4g08220
malus_domestica MD13G1253900.v1.1 MD16G1257900.v1.1
prunus_persica Prupe.1G086100_v2.0.a1
pyrus_communis pycom13g22430
rosa_chinensis RchiOBHm_Chr4g0402471
rosa_laevigata RLG00000009081
rosa_multiflora Rmu_co8180070.1_g000001 Rmu_ssc0000330.1_g000029
rosa_roxburghii Rroxscaffold_5G00347160
rosa_rugosa Rorug04G0035700
rosa_samantha Rh4BG105500 Rh4CG119900 Rh4DG104900
rosa_wichuraiana Rw4G009060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 757
AccBSI CCGCTC 1 cut(s) 411
AccII CGCG 1 cut(s) 329
AciI CCGC 5 cut(s) 234, 327, 389, 409, 578
AclWI GGATC 1 cut(s) 682
AcvI CACGTG 1 cut(s) 437
AcyI GRCGYC 1 cut(s) 758
AdeI CACNNNGTG 1 cut(s) 380
AfaI GTAC 2 cut(s) 367, 453
AgeI ACCGGT 1 cut(s) 634
AgsI TTSAA 1 cut(s) 59
AjiI CACGTC 1 cut(s) 377
AleI CACNNNNGTG 1 cut(s) 743
AluBI AGCT 4 cut(s) 209, 346, 430, 668
AluI AGCT 4 cut(s) 209, 346, 430, 668
Alw21I GWGCWC 2 cut(s) 288, 670
AlwI GGATC 1 cut(s) 682
AoxI GGCC 2 cut(s) 337, 536
ApeKI GCWGC 1 cut(s) 749
AsiGI ACCGGT 1 cut(s) 634
Asp700I GAANNNNTTC 1 cut(s) 304
AspLEI GCGC 1 cut(s) 760
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 4 cut(s) 56, 267, 681, 687
AvaII GGWCC 1 cut(s) 392
BanI GGYRCC 1 cut(s) 757
BanII GRGCYC 1 cut(s) 670
BauI CACGAG 1 cut(s) 669
BbrPI CACGTG 1 cut(s) 437
BbsI GAAGAC 3 cut(s) 90, 153, 504
Bbv12I GWGCWC 2 cut(s) 288, 670
BbvI GCAGC 1 cut(s) 736
BccI CCATC 3 cut(s) 537, 655, 694
BceAI ACGGC 4 cut(s) 279, 594, 745, 771
BclI TGATCA 1 cut(s) 552
BcnI CCSGG 1 cut(s) 357
BfaI CTAG 1 cut(s) 68
BfoI RGCGCY 1 cut(s) 761
BglII AGATCT 1 cut(s) 103
BisI GCNGC 2 cut(s) 409, 750
BlsI GCNGC 2 cut(s) 410, 751
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 1 cut(s) 392
BmgBI CACGTC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 3 cut(s) 393, 759, 771
BmrFI CCNGG 1 cut(s) 357
BpiI GAAGAC 3 cut(s) 90, 153, 504
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 578
BpuMI CCSGG 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 437
BsaHI GRCGYC 1 cut(s) 758
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 2 cut(s) 463, 634
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 655, 685
Bse118I RCCGGY 1 cut(s) 634
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 3 cut(s) 191, 243, 775
BseMII CTCAG 2 cut(s) 273, 306
BseXI GCAGC 1 cut(s) 736
Bsh1236I CGCG 1 cut(s) 329
Bsh1285I CGRYCG 1 cut(s) 683
BshFI GGCC 2 cut(s) 339, 538
BshNI GGYRCC 1 cut(s) 757
BshTI ACCGGT 1 cut(s) 634
BsiEI CGRYCG 1 cut(s) 683
BsiHKAI GWGCWC 2 cut(s) 288, 670
BsiSI CCGG 6 cut(s) 212, 357, 464, 581, 622, 635
BslFI GGGAC 2 cut(s) 339, 405
BsmFI GGGAC 2 cut(s) 339, 405
BsnI GGCC 2 cut(s) 339, 538
Bsp1286I GDGCHC 2 cut(s) 288, 670
Bsp143I GATC 4 cut(s) 103, 552, 585, 674
BspACI CCGC 5 cut(s) 234, 327, 389, 409, 578
BspANI GGCC 2 cut(s) 339, 538
BspCNI CTCAG 2 cut(s) 274, 307
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 3 cut(s) 393, 759, 771
BspPI GGATC 1 cut(s) 682
BspT107I GGYRCC 1 cut(s) 757
BsrBI CCGCTC 1 cut(s) 411
BsrFI RCCGGY 1 cut(s) 634
BssAI RCCGGY 1 cut(s) 634
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 4 cut(s) 103, 552, 585, 674
BssNI GRCGYC 1 cut(s) 758
BssSI CACGAG 1 cut(s) 669
Bst2BI CACGAG 1 cut(s) 669
Bst4CI ACNGT 6 cut(s) 162, 312, 353, 370, 451, 693
BstACI GRCGYC 1 cut(s) 758
BstBAI YACGTR 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 2 cut(s) 282, 315
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 3 cut(s) 191, 243, 775
BstFNI CGCG 1 cut(s) 329
BstH2I RGCGCY 1 cut(s) 761
BstHHI GCGC 1 cut(s) 760
BstKTI GATC 4 cut(s) 106, 555, 588, 677
BstMBI GATC 4 cut(s) 103, 552, 585, 674
BstMCI CGRYCG 1 cut(s) 683
BstMWI GCNNNNNNNGC 1 cut(s) 755
BstSCI CCNGG 1 cut(s) 355
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 736
BstV2I GAAGAC 3 cut(s) 90, 153, 504
BstX2I RGATCY 2 cut(s) 103, 674
BstXI CCANNNNNNTGG 1 cut(s) 745
BstYI RGATCY 2 cut(s) 103, 674
BsuRI GGCC 2 cut(s) 339, 538
BtgI CCRYGG 1 cut(s) 369
BtrI CACGTC 1 cut(s) 377
BtsCI GGATG 3 cut(s) 191, 243, 775
Cac8I GCNNGC 1 cut(s) 406
CfoI GCGC 1 cut(s) 760
Cfr10I RCCGGY 1 cut(s) 634
Cfr13I GGNCC 1 cut(s) 392
CseI GACGC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 366, 452
CspAI ACCGGT 1 cut(s) 634
CviAII CATG 1 cut(s) 556
CviQI GTAC 2 cut(s) 366, 452
DdeI CTNAG 2 cut(s) 282, 315
DinI GGCGCC 1 cut(s) 759
DpnI GATC 4 cut(s) 105, 554, 587, 676
DpnII GATC 4 cut(s) 103, 552, 585, 674
DraI TTTAAA 1 cut(s) 252
DraIII CACNNNGTG 1 cut(s) 380
EciI GGCGGA 1 cut(s) 567
Ecl136II GAGCTC 1 cut(s) 668
Eco24I GRGCYC 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 392
Eco53kI GAGCTC 1 cut(s) 668
Eco72I CACGTG 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 668
EcoO109I RGGNCCY 1 cut(s) 392
EcoT38I GRGCYC 1 cut(s) 670
EgeI GGCGCC 1 cut(s) 759
EheI GGCGCC 1 cut(s) 759
FaeI CATG 1 cut(s) 559
FaiI YATR 8 cut(s) 224, 342, 398, 549, 557, 602, 641, 781
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FaqI GGGAC 2 cut(s) 339, 405
FatI CATG 1 cut(s) 555
FauI CCCGC 2 cut(s) 227, 382
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 2 cut(s) 409, 750
FokI GGATG 3 cut(s) 178, 230, 762
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 2 cut(s) 409, 750
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 759
GluI GCNGC 2 cut(s) 409, 750
HaeII RGCGCY 1 cut(s) 761
HaeIII GGCC 2 cut(s) 339, 538
HapII CCGG 6 cut(s) 212, 357, 464, 581, 622, 635
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 760
Hin1I GRCGYC 1 cut(s) 758
Hin1II CATG 1 cut(s) 559
Hin6I GCGC 1 cut(s) 758
HinP1I GCGC 1 cut(s) 758
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 2 cut(s) 344, 428
HinfI GANTC 4 cut(s) 124, 300, 317, 616
HpaII CCGG 6 cut(s) 212, 357, 464, 581, 622, 635
HphI GGTGA 4 cut(s) 56, 267, 681, 687
Hpy166II GTNNAC 2 cut(s) 165, 308
Hpy188I TCNGA 3 cut(s) 101, 316, 615
Hpy188III TCNNGA 3 cut(s) 281, 380, 516
Hpy8I GTNNAC 2 cut(s) 165, 308
Hpy99I CGWCG 3 cut(s) 206, 300, 381
HpyAV CCTTC 1 cut(s) 708
HpyCH4III ACNGT 6 cut(s) 162, 312, 353, 370, 451, 693
HpyCH4IV ACGT 4 cut(s) 204, 376, 436, 509
HpyCH4V TGCA 1 cut(s) 729
HpyF10VI GCNNNNNNNGC 1 cut(s) 755
HpyF3I CTNAG 2 cut(s) 282, 315
HpySE526I ACGT 4 cut(s) 204, 376, 436, 509
Hsp92I GRCGYC 1 cut(s) 758
Hsp92II CATG 1 cut(s) 559
HspAI GCGC 1 cut(s) 758
KasI GGCGCC 1 cut(s) 757
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 4 cut(s) 103, 552, 585, 674
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 1 cut(s) 736
MaeI CTAG 1 cut(s) 68
MaeII ACGT 4 cut(s) 204, 376, 436, 509
MaeIII GTNAC 2 cut(s) 380, 693
MalI GATC 4 cut(s) 105, 554, 587, 676
MbiI CCGCTC 1 cut(s) 411
MboI GATC 4 cut(s) 103, 552, 585, 674
MboII GAAGA 6 cut(s) 83, 86, 95, 98, 158, 504
MflI RGATCY 2 cut(s) 103, 674
MhlI GDGCHC 2 cut(s) 288, 670
Mly113I GGCGCC 1 cut(s) 758
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 7 cut(s) 122, 199, 205, 288, 393, 699, 783
MroXI GAANNNNTTC 1 cut(s) 304
MseI TTAA 4 cut(s) 251, 348, 570, 722
MslI CAYNNNNRTG 1 cut(s) 743
MspI CCGG 6 cut(s) 212, 357, 464, 581, 622, 635
MspR9I CCNGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 755
NarI GGCGCC 1 cut(s) 758
NciI CCSGG 1 cut(s) 357
NdeII GATC 4 cut(s) 103, 552, 585, 674
NlaIII CATG 1 cut(s) 559
NlaIV GGNNCC 3 cut(s) 393, 759, 771
NmuCI GTSAC 2 cut(s) 380, 693
OliI CACNNNNGTG 1 cut(s) 743
PcsI WCGNNNNNNNCGW 1 cut(s) 689
PdmI GAANNNNTTC 1 cut(s) 304
PfeI GAWTC 3 cut(s) 124, 300, 616
PinAI ACCGGT 1 cut(s) 634
PkrI GCNGC 2 cut(s) 410, 751
PleI GAGTC 1 cut(s) 325
PluTI GGCGCC 1 cut(s) 761
PmaCI CACGTG 1 cut(s) 437
PmlI CACGTG 1 cut(s) 437
PpsI GAGTC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 437
PpuMI RGGWCCY 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 670
Psp5II RGGWCCY 1 cut(s) 392
PspCI CACGTG 1 cut(s) 437
PspN4I GGNNCC 3 cut(s) 393, 759, 771
PspPI GGNCC 1 cut(s) 392
PspPPI RGGWCCY 1 cut(s) 392
PsuI RGATCY 2 cut(s) 103, 674
RsaI GTAC 2 cut(s) 367, 453
RsaNI GTAC 2 cut(s) 366, 452
RseI CAYNNNNRTG 1 cut(s) 743
SacI GAGCTC 1 cut(s) 670
SaqAI TTAA 4 cut(s) 251, 348, 570, 722
SatI GCNGC 2 cut(s) 409, 750
Sau3AI GATC 4 cut(s) 103, 552, 585, 674
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 2 cut(s) 288, 670
SfoI GGCGCC 1 cut(s) 759
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
SsiI CCGC 5 cut(s) 234, 327, 389, 409, 578
SspDI GGCGCC 1 cut(s) 757
SspI AATATT 1 cut(s) 628
SspMI CTAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 670
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 6 cut(s) 162, 312, 353, 370, 451, 693
TaiI ACGT 4 cut(s) 207, 379, 439, 512
TaqI TCGA 3 cut(s) 298, 479, 588
TaqII GACCGA 1 cut(s) 669
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 3 cut(s) 124, 300, 616
Tru1I TTAA 4 cut(s) 251, 348, 570, 722
Tru9I TTAA 4 cut(s) 251, 348, 570, 722
TseFI GTSAC 2 cut(s) 380, 693
TseI GCWGC 1 cut(s) 749
Tsp45I GTSAC 2 cut(s) 380, 693
TspDTI ATGAA 1 cut(s) 465
TspGWI ACGGA 2 cut(s) 182, 293
VpaK11BI GGWCC 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 304
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.