Rroxscaffold_5G00347160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015341
Physical Location & Seq
Forward (+)
18350209 .. 18351018
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347160.1

Sequence Viewer

Length: 810 bp
ATGGGAGACGATAATACCAACAACACTGATTTTCAATTTCAGCCAGACCCCTACGAAGACGAAGAAGCCGAGGAGGCACTTTCTCTCTGCGACCTTCCACTGGACACCGAAGCTGAAGAGTTCCACGATTTGTCGTCCAAGTTCCTAAACGCTCGCTGCTCTTCCTCCGAATTCTTCGAGTTCTTCAGTGACCAGAGCTCCGATAGCTTTATGTGTTCCGCCGAAGACATCATCGTCTGTGGCAAACTCATACCCTTCAAAGAGAACACACCCACTCCTCAAGCTCCAAAGCCTTCTTCGAATCCCAAGCATGATCATCAGAAGAAACAAACAGCTTTTCGACGACGGTCCGAATCACTGTCCGGGATACAAAGCACCGTCACGAGATCAAGCAGCACCAAGAACAAGATCATGATGACCAACAGCCGGTCGTTGGATTACAGGAAACTTCACCGCCAAAGCTCGATGGTTTCACCTGTGCCGGAGATGGAGCGAAACTCTTCAGTAAGGAGTGTGGGATCTTCAAAGTCCGATAAGAAGAGCACCAGTAGTGGTAAGCCAAAATGGTCATTTCTTTTGTTTGGGATTGTCAAATTTCCGGCGGAGATGGATCTCAGCGACATCAAGAGCCGGCAGGTCAGGAAAAACCCGTCTACCACTCTGTTTCCCGATACTTCCGTCGGGAAGTGTCCGACGGTCAGTCGGAGCAACTCCGGTAACAAGGGCTCTTGGAAGCTGCTCAGGGCATTGAGCTGCAAGGATCATTCGAGTGTTTCTGTAACGACGTCGTACTACGTGTCGCAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.06

Weight (kDa)

8.15

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30230
fragaria_vesca FvH4_4g08220
malus_domestica MD13G1253900.v1.1 MD16G1257900.v1.1
prunus_persica Prupe.1G086100_v2.0.a1
pyrus_communis pycom13g22430
rosa_chinensis RchiOBHm_Chr4g0402471
rosa_laevigata RLG00000009081
rosa_multiflora Rmu_co8180070.1_g000001 Rmu_ssc0000330.1_g000029
rosa_roxburghii Rroxscaffold_5G00347160
rosa_rugosa Rorug04G0035700
rosa_samantha Rh4BG105500 Rh4CG119900 Rh4DG104900
rosa_wichuraiana Rw4G009060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AatII GACGTC 1 cut(s) 788
Acc36I ACCTGC 1 cut(s) 625
AccI GTMKAC 1 cut(s) 653
AciI CCGC 3 cut(s) 219, 454, 602
AclWI GGATC 3 cut(s) 526, 618, 768
AcsI RAATTY 2 cut(s) 170, 593
AcuI CTGAAG 3 cut(s) 135, 169, 486
AcyI GRCGYC 1 cut(s) 785
AfaI GTAC 1 cut(s) 791
AfiI CCNNNNNNNGG 3 cut(s) 100, 426, 433
AflIII ACRYGT 1 cut(s) 795
AgsI TTSAA 3 cut(s) 35, 259, 525
AhdI GACNNNNNGTC 1 cut(s) 699
AjuI GAANNNNNNNTTGG 2 cut(s) 280, 312
AluBI AGCT 8 cut(s) 113, 198, 207, 284, 335, 462, 736, 753
AluI AGCT 8 cut(s) 113, 198, 207, 284, 335, 462, 736, 753
Alw21I GWGCWC 2 cut(s) 200, 545
AlwI GGATC 3 cut(s) 526, 618, 768
ApeKI GCWGC 4 cut(s) 156, 393, 736, 753
ApoI RAATTY 2 cut(s) 170, 593
Asp700I GAANNNNTTC 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 348
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 2 cut(s) 443, 465
AsuII TTCGAA 1 cut(s) 299
AvaII GGWCC 1 cut(s) 348
BaeI ACNNNNGTAYC 2 cut(s) 663, 696
BanII GRGCYC 2 cut(s) 200, 728
BauI CACGAG 1 cut(s) 382
BbsI GAAGAC 2 cut(s) 63, 231
Bbv12I GWGCWC 2 cut(s) 200, 545
BbvI GCAGC 4 cut(s) 143, 405, 723, 740
BccI CCATC 3 cut(s) 460, 481, 601
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 1 cut(s) 364
BfuAI ACCTGC 1 cut(s) 625
BfuI GTATCC 1 cut(s) 360
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 4 cut(s) 157, 394, 737, 754
BlsI GCNGC 4 cut(s) 158, 395, 738, 755
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 348
BmeRI GACNNNNNGTC 1 cut(s) 699
BmgT120I GGNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 364
BoxI GACNNNNGTC 1 cut(s) 346
BpiI GAAGAC 2 cut(s) 63, 231
BplI GAGNNNNNCTC 2 cut(s) 482, 514
Bpu10I CCTNAGC 1 cut(s) 740
Bpu14I TTCGAA 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 364
BsaAI YACGTR 1 cut(s) 796
BsaHI GRCGYC 1 cut(s) 785
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 713
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 259, 289
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 426, 433
Bse118I RCCGGY 2 cut(s) 426, 630
Bse1I ACTGG 2 cut(s) 105, 546
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 3 cut(s) 100, 426, 433
BseMII CTCAG 2 cut(s) 628, 754
BseNI ACTGG 2 cut(s) 105, 546
BseRI GAGGAG 2 cut(s) 86, 267
BseXI GCAGC 4 cut(s) 143, 405, 723, 740
Bsh1285I CGRYCG 1 cut(s) 431
BsiEI CGRYCG 1 cut(s) 431
BsiHKAI GWGCWC 2 cut(s) 200, 545
BsiSI CCGG 6 cut(s) 363, 427, 482, 599, 631, 714
BslI CCNNNNNNNGG 3 cut(s) 100, 426, 433
Bsp119I TTCGAA 1 cut(s) 299
Bsp1286I GDGCHC 3 cut(s) 200, 545, 728
Bsp143I GATC 6 cut(s) 313, 386, 408, 518, 610, 760
BspACI CCGC 3 cut(s) 219, 454, 602
BspCNI CTCAG 2 cut(s) 627, 753
BspHI TCATGA 1 cut(s) 411
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 3 cut(s) 526, 618, 768
BspQI GCTCTTC 2 cut(s) 166, 533
BspT104I TTCGAA 1 cut(s) 299
BsrFI RCCGGY 2 cut(s) 426, 630
BsrI ACTGG 2 cut(s) 105, 546
BssAI RCCGGY 2 cut(s) 426, 630
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 6 cut(s) 313, 386, 408, 518, 610, 760
BssNI GRCGYC 1 cut(s) 785
BssSI CACGAG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 382
Bst4CI ACNGT 4 cut(s) 348, 360, 379, 697
Bst6I CTCTTC 4 cut(s) 111, 166, 505, 533
BstACI GRCGYC 1 cut(s) 785
BstBAI YACGTR 1 cut(s) 796
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 154, 632
BstDEI CTNAG 2 cut(s) 614, 740
BstKTI GATC 6 cut(s) 316, 389, 411, 521, 613, 763
BstMBI GATC 6 cut(s) 313, 386, 408, 518, 610, 760
BstMCI CGRYCG 1 cut(s) 431
BstMWI GCNNNNNNNGC 2 cut(s) 74, 204
BstPAI GACNNNNGTC 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 362
BstV1I GCAGC 4 cut(s) 143, 405, 723, 740
BstV2I GAAGAC 2 cut(s) 63, 231
BstX2I RGATCY 2 cut(s) 518, 610
BstYI RGATCY 2 cut(s) 518, 610
BsuI GTATCC 1 cut(s) 360
BtsIMutI CAGTG 4 cut(s) 24, 98, 193, 356
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 2 cut(s) 154, 632
CciI TCATGA 1 cut(s) 411
Cfr10I RCCGGY 2 cut(s) 426, 630
Cfr13I GGNCC 1 cut(s) 348
CpoI CGGWCCG 1 cut(s) 348
Csp6I GTAC 1 cut(s) 790
CspI CGGWCCG 1 cut(s) 348
CviAII CATG 2 cut(s) 311, 412
CviQI GTAC 1 cut(s) 790
DdeI CTNAG 2 cut(s) 614, 740
DpnI GATC 6 cut(s) 315, 388, 410, 520, 612, 762
DpnII GATC 6 cut(s) 313, 386, 408, 518, 610, 760
DrdI GACNNNNNNGTC 1 cut(s) 233
DriI GACNNNNNGTC 1 cut(s) 699
DseDI GACNNNNNNGTC 1 cut(s) 233
Eam1104I CTCTTC 4 cut(s) 111, 166, 505, 533
Eam1105I GACNNNNNGTC 1 cut(s) 699
EarI CTCTTC 4 cut(s) 111, 166, 505, 533
EciI GGCGGA 2 cut(s) 208, 617
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 2 cut(s) 200, 728
Eco47I GGWCC 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 3 cut(s) 135, 169, 486
EcoICRI GAGCTC 1 cut(s) 198
EcoRI GAATTC 1 cut(s) 170
EcoT38I GRGCYC 2 cut(s) 200, 728
FaeI CATG 2 cut(s) 314, 415
FaiI YATR 4 cut(s) 212, 251, 312, 413
FatI CATG 2 cut(s) 310, 411
FbaI TGATCA 1 cut(s) 313
FblI GTMKAC 1 cut(s) 653
Fnu4HI GCNGC 4 cut(s) 157, 394, 737, 754
FriOI GRGCYC 2 cut(s) 200, 728
Fsp4HI GCNGC 4 cut(s) 157, 394, 737, 754
GluI GCNGC 4 cut(s) 157, 394, 737, 754
HapII CCGG 6 cut(s) 363, 427, 482, 599, 631, 714
Hin1I GRCGYC 1 cut(s) 785
Hin1II CATG 2 cut(s) 314, 415
HinfI GANTC 2 cut(s) 301, 353
HpaII CCGG 6 cut(s) 363, 427, 482, 599, 631, 714
HphI GGTGA 2 cut(s) 443, 465
Hpy166II GTNNAC 1 cut(s) 654
Hpy188I TCNGA 7 cut(s) 169, 202, 321, 352, 532, 693, 705
Hpy188III TCNNGA 6 cut(s) 382, 412, 625, 640, 668, 682
Hpy8I GTNNAC 1 cut(s) 654
Hpy99I CGWCG 6 cut(s) 345, 348, 683, 697, 787, 790
HpyAV CCTTC 3 cut(s) 104, 265, 303
HpyCH4III ACNGT 4 cut(s) 348, 360, 379, 697
HpyCH4IV ACGT 2 cut(s) 785, 795
HpyCH4V TGCA 1 cut(s) 756
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 204
HpyF3I CTNAG 2 cut(s) 614, 740
HpySE526I ACGT 2 cut(s) 785, 795
Hsp92I GRCGYC 1 cut(s) 785
Hsp92II CATG 2 cut(s) 314, 415
KroI GCCGGC 1 cut(s) 630
KroNI GCCGGC 1 cut(s) 632
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 6 cut(s) 313, 386, 408, 518, 610, 760
LguI GCTCTTC 2 cut(s) 166, 533
LmnI GCTCC 4 cut(s) 203, 289, 490, 705
Lsp1109I GCAGC 4 cut(s) 143, 405, 723, 740
MaeII ACGT 2 cut(s) 785, 795
MaeIII GTNAC 4 cut(s) 188, 379, 716, 778
MalI GATC 6 cut(s) 315, 388, 410, 520, 612, 762
MboI GATC 6 cut(s) 313, 386, 408, 518, 610, 760
MflI RGATCY 2 cut(s) 518, 610
MhlI GDGCHC 3 cut(s) 200, 545, 728
MluCI AATT 3 cut(s) 35, 170, 593
MmeI TCCRAC 3 cut(s) 414, 683, 716
MnlI CCTC 4 cut(s) 64, 67, 175, 288
MroNI GCCGGC 1 cut(s) 630
MroXI GAANNNNTTC 1 cut(s) 499
MslI CAYNNNNRTG 1 cut(s) 768
MspI CCGG 6 cut(s) 363, 427, 482, 599, 631, 714
MspR9I CCNGG 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 74, 204
NaeI GCCGGC 1 cut(s) 632
NciI CCSGG 1 cut(s) 364
NdeII GATC 6 cut(s) 313, 386, 408, 518, 610, 760
NgoMIV GCCGGC 1 cut(s) 630
NlaIII CATG 2 cut(s) 314, 415
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 188, 379
NspV TTCGAA 1 cut(s) 299
PagI TCATGA 1 cut(s) 411
PciSI GCTCTTC 2 cut(s) 166, 533
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PdiI GCCGGC 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 2 cut(s) 301, 353
PfoI TCCNGGA 1 cut(s) 362
PkrI GCNGC 4 cut(s) 158, 395, 738, 755
Ppu21I YACGTR 1 cut(s) 796
PshAI GACNNNNGTC 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 348
PsuI RGATCY 2 cut(s) 518, 610
RsaI GTAC 1 cut(s) 791
RsaNI GTAC 1 cut(s) 790
RseI CAYNNNNRTG 1 cut(s) 768
Rsr2I CGGWCCG 1 cut(s) 348
RsrII CGGWCCG 1 cut(s) 348
SacI GAGCTC 1 cut(s) 200
SapI GCTCTTC 2 cut(s) 166, 533
SatI GCNGC 4 cut(s) 157, 394, 737, 754
Sau3AI GATC 6 cut(s) 313, 386, 408, 518, 610, 760
Sau96I GGNCC 1 cut(s) 348
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 3 cut(s) 200, 545, 728
SfuI TTCGAA 1 cut(s) 299
SinI GGWCC 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 3 cut(s) 35, 170, 593
SsiI CCGC 3 cut(s) 219, 454, 602
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 4 cut(s) 348, 360, 379, 697
TaiI ACGT 2 cut(s) 788, 798
TaqI TCGA 5 cut(s) 177, 299, 340, 464, 767
TasI AATT 3 cut(s) 35, 170, 593
TfiI GAWTC 2 cut(s) 301, 353
TscAI CASTG 4 cut(s) 31, 105, 193, 363
TseFI GTSAC 2 cut(s) 188, 379
TseI GCWGC 4 cut(s) 156, 393, 736, 753
Tsp45I GTSAC 2 cut(s) 188, 379
TspGWI ACGGA 1 cut(s) 667
TspRI CASTG 4 cut(s) 31, 105, 193, 363
VpaK11BI GGWCC 1 cut(s) 348
XapI RAATTY 2 cut(s) 170, 593
XmiI GTMKAC 1 cut(s) 653
XmnI GAANNNNTTC 1 cut(s) 499
ZraI GACGTC 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.