pycom13g22430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015341
Physical Location & Seq
Reverse (-)
19921848 .. 19922213
366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g22430.1

Sequence Viewer

Length: 366 bp
ATGATGAGGAACAGCAGATCCTTGGATTATCAAAAGCTTCACCGGCAATCTTCGATGGTATCCCCGACCCCGGCAGAGATGGAGAGGAATTCTTCCACGAAGAGTGTTGGAAAATACGATAAGAAGAGTGGTAACAAGCCAAAGTGGTATTTTCTCATGTTTGGGATTGTGAGGTTTCCGTCTGAGATGGACCTAAGCGACATCAAGAACCGGCAGATTCGACGGAACCCTTCCACCACGCTCTTCCGGAGTGAAGCCTCTGACAATCGGAGCTCCGGAAAGGGCTCCTGGAGACTGCTCAGGGCATTGAGCTGCAAGGACCATGCAAGTGTTCCTGTAACACCGCCGTACTGTACACAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.91

Weight (kDa)

10.24

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30230
fragaria_vesca FvH4_4g08220
malus_domestica MD13G1253900.v1.1 MD16G1257900.v1.1
prunus_persica Prupe.1G086100_v2.0.a1
pyrus_communis pycom13g22430
rosa_chinensis RchiOBHm_Chr4g0402471
rosa_laevigata RLG00000009081
rosa_multiflora Rmu_co8180070.1_g000001 Rmu_ssc0000330.1_g000029
rosa_roxburghii Rroxscaffold_5G00347160
rosa_rugosa Rorug04G0035700
rosa_samantha Rh4BG105500 Rh4CG119900 Rh4DG104900
rosa_wichuraiana Rw4G009060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 246, 275
AciI CCGC 1 cut(s) 344
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 2 cut(s) 350, 355
AfiI CCNNNNNNNGG 1 cut(s) 70
AjnI CCWGG 1 cut(s) 287
AleI CACNNNNGTG 1 cut(s) 361
AloI GAACNNNNNNTCC 1 cut(s) 34
AluBI AGCT 3 cut(s) 37, 273, 312
AluI AGCT 3 cut(s) 37, 273, 312
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 2 cut(s) 246, 275
ApeKI GCWGC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 190, 319
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 2 cut(s) 190, 319
BanII GRGCYC 2 cut(s) 275, 287
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 299
BccI CCATC 3 cut(s) 49, 73, 181
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 289
BciVI GTATCC 1 cut(s) 70
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 286
BfuI GTATCC 1 cut(s) 70
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 2 cut(s) 71, 289
Bme18I GGWCC 2 cut(s) 190, 319
BmgT120I GGNCC 2 cut(s) 190, 319
BmiI GGNNCC 2 cut(s) 227, 286
BmrFI CCNGG 2 cut(s) 71, 289
BpmI CTGGAG 1 cut(s) 310
Bpu10I CCTNAGC 2 cut(s) 194, 299
BpuMI CCSGG 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 21, 69
BsaWI WCCGGW 2 cut(s) 246, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse118I RCCGGY 2 cut(s) 42, 210
BseAI TCCGGA 2 cut(s) 246, 275
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 21, 69
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 174, 313
BseXI GCAGC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 275
BsiSI CCGG 5 cut(s) 43, 71, 211, 247, 276
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 275, 287
Bsp13I TCCGGA 2 cut(s) 246, 275
Bsp1407I TGTACA 1 cut(s) 353
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 1 cut(s) 344
BspCNI CTCAG 2 cut(s) 175, 312
BspEI TCCGGA 2 cut(s) 246, 275
BspLI GGNNCC 2 cut(s) 227, 286
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 248
BsrFI RCCGGY 2 cut(s) 42, 210
BsrGI TGTACA 1 cut(s) 353
BssAI RCCGGY 2 cut(s) 42, 210
BssECI CCNNGG 2 cut(s) 21, 69
BssMI GATC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 3 cut(s) 95, 119, 248
BstAUI TGTACA 1 cut(s) 353
BstDEI CTNAG 3 cut(s) 183, 194, 299
BstKTI GATC 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 2 cut(s) 69, 287
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuI GTATCC 1 cut(s) 70
Cfr10I RCCGGY 2 cut(s) 42, 210
Cfr13I GGNCC 2 cut(s) 190, 319
Csp6I GTAC 2 cut(s) 349, 354
CviAII CATG 2 cut(s) 157, 323
CviJI RGCY 6 cut(s) 37, 139, 257, 273, 285, 312
CviKI_1 RGCY 6 cut(s) 37, 139, 257, 273, 285, 312
CviQI GTAC 2 cut(s) 349, 354
DdeI CTNAG 3 cut(s) 183, 194, 299
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
Eam1104I CTCTTC 3 cut(s) 95, 119, 248
EarI CTCTTC 3 cut(s) 95, 119, 248
Ecl136II GAGCTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 2 cut(s) 275, 287
Eco47I GGWCC 2 cut(s) 190, 319
Eco53kI GAGCTC 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 273
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 21
EcoT38I GRGCYC 2 cut(s) 275, 287
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 2 cut(s) 160, 326
FaiI YATR 2 cut(s) 158, 324
FatI CATG 2 cut(s) 156, 322
Fnu4HI GCNGC 1 cut(s) 313
FriOI GRGCYC 2 cut(s) 275, 287
Fsp4HI GCNGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 313
GsuI CTGGAG 1 cut(s) 310
HapII CCGG 5 cut(s) 43, 71, 211, 247, 276
Hin1II CATG 2 cut(s) 160, 326
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 1 cut(s) 217
HpaII CCGG 5 cut(s) 43, 71, 211, 247, 276
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 3 cut(s) 184, 262, 270
Hpy188III TCNNGA 3 cut(s) 205, 247, 276
Hpy8I GTNNAC 1 cut(s) 356
Hpy99I CGWCG 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 2 cut(s) 315, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 3 cut(s) 183, 194, 299
Hsp92II CATG 2 cut(s) 160, 326
Kpn2I TCCGGA 2 cut(s) 246, 275
Kzo9I GATC 1 cut(s) 17
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 3 cut(s) 270, 278, 290
LpnPI CCDG 9 cut(s) 56, 84, 224, 260, 274, 286, 289, 301, 348
Lsp1109I GCAGC 1 cut(s) 299
MaeIII GTNAC 2 cut(s) 131, 337
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 5 cut(s) 42, 84, 112, 136, 235
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 2 cut(s) 275, 287
MluCI AATT 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 3 cut(s) 78, 165, 268
MroI TCCGGA 2 cut(s) 246, 275
MslI CAYNNNNRTG 2 cut(s) 327, 361
MspI CCGG 5 cut(s) 43, 71, 211, 247, 276
MspR9I CCNGG 2 cut(s) 71, 289
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 17
NlaIII CATG 2 cut(s) 160, 326
NlaIV GGNNCC 2 cut(s) 227, 286
OliI CACNNNNGTG 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 287
PkrI GCNGC 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 227, 286
PspPI GGNCC 2 cut(s) 190, 319
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 2 cut(s) 350, 355
RsaNI GTAC 2 cut(s) 349, 354
RseI CAYNNNNRTG 2 cut(s) 327, 361
SacI GAGCTC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 248
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 2 cut(s) 190, 319
ScrFI CCNGG 2 cut(s) 71, 289
SduI GDGCHC 2 cut(s) 275, 287
SetI ASST 5 cut(s) 39, 176, 195, 275, 314
SinI GGWCC 2 cut(s) 190, 319
SmiMI CAYNNNNRTG 2 cut(s) 327, 361
Sse9I AATT 1 cut(s) 88
SsiI CCGC 1 cut(s) 344
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 69, 287
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 353
TaqI TCGA 2 cut(s) 53, 220
TasI AATT 1 cut(s) 88
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 1 cut(s) 217
TseI GCWGC 1 cut(s) 312
TspGWI ACGGA 2 cut(s) 168, 238
VpaK11BI GGWCC 2 cut(s) 190, 319
XapI RAATTY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.