Rmu_co8180070.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8180070.1
OG0015341
Physical Location & Seq
Forward (+)
57 .. 684
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8180070.1_g000001.1.cds

Sequence Viewer

Length: 628 bp
atgggagacgataataccaacaacacggattttcaatttcatccagacccctacgaagacgaagaagccgaggaggcactttctctctgcgatcttccactggacaccgaagctgaagagttccacgatttgacgtccaagttcctaaacgctcgctgctcttcctccgaattcttcgagttcttcagtgaccagagctccgatagcttcatgtgttccgccgaagacatcatcgtctgtggcaaactcatacccttcaaagagaacacacccactcctcaagctccaaagccttcttcgaatcccaagcatgatcatcagaagaaacaaacagcttttcgacgacggtccgaatcactgtccgggatacaaagcactgtcacgagatcaagcagcaccaagaacaagatcatgatgaccaacagccggtcgttggattacaggaaacttcaccgccaaagctctatggtttcaccggtgccggagatagatcgaaactcttcagtaaggagtgtgggatcttcaaagtccgataagaagagtactagtagtggtaagccaaaatggtcatttcttttgtttgggattgtcaaatttccggcggagatggatctcagcgacatcaaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.54

Weight (kDa)

5.59

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30230
fragaria_vesca FvH4_4g08220
malus_domestica MD13G1253900.v1.1 MD16G1257900.v1.1
prunus_persica Prupe.1G086100_v2.0.a1
pyrus_communis pycom13g22430
rosa_chinensis RchiOBHm_Chr4g0402471
rosa_laevigata RLG00000009081
rosa_multiflora Rmu_co8180070.1_g000001 Rmu_ssc0000330.1_g000029
rosa_roxburghii Rroxscaffold_5G00347160
rosa_rugosa Rorug04G0035700
rosa_samantha Rh4BG105500 Rh4CG119900 Rh4DG104900
rosa_wichuraiana Rw4G009060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AatII GACGTC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 478
AciI CCGC 3 cut(s) 219, 454, 602
AclWI GGATC 2 cut(s) 526, 618
AcsI RAATTY 2 cut(s) 170, 593
AcuI CTGAAG 3 cut(s) 135, 169, 486
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 544
AfiI CCNNNNNNNGG 2 cut(s) 426, 433
AgeI ACCGGT 1 cut(s) 475
AgsI TTSAA 3 cut(s) 35, 259, 525
AhlI ACTAGT 1 cut(s) 545
AjuI GAANNNNNNNTTGG 2 cut(s) 280, 312
AluBI AGCT 6 cut(s) 113, 198, 207, 284, 335, 462
AluI AGCT 6 cut(s) 113, 198, 207, 284, 335, 462
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 2 cut(s) 526, 618
ApeKI GCWGC 2 cut(s) 156, 393
ApoI RAATTY 2 cut(s) 170, 593
AsiGI ACCGGT 1 cut(s) 475
Asp700I GAANNNNTTC 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 348
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 2 cut(s) 443, 465
AsuII TTCGAA 1 cut(s) 299
AvaII GGWCC 1 cut(s) 348
BanI GGYRCC 1 cut(s) 478
BanII GRGCYC 1 cut(s) 200
BauI CACGAG 1 cut(s) 382
BbsI GAAGAC 2 cut(s) 63, 231
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 2 cut(s) 143, 405
BccI CCATC 1 cut(s) 601
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 1 cut(s) 364
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 1 cut(s) 546
BfuI GTATCC 1 cut(s) 360
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 2 cut(s) 157, 394
BlsI GCNGC 2 cut(s) 158, 395
BmcAI AGTACT 1 cut(s) 544
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 348
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 1 cut(s) 364
BoxI GACNNNNGTC 1 cut(s) 346
BpiI GAAGAC 2 cut(s) 63, 231
Bpu14I TTCGAA 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 364
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 475
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 259, 289
Bsc4I CCNNNNNNNGG 2 cut(s) 426, 433
Bse118I RCCGGY 2 cut(s) 426, 475
Bse1I ACTGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 426, 433
BseMII CTCAG 1 cut(s) 628
BseNI ACTGG 1 cut(s) 105
BseRI GAGGAG 2 cut(s) 86, 267
BseXI GCAGC 2 cut(s) 143, 405
Bsh1285I CGRYCG 1 cut(s) 431
BshNI GGYRCC 1 cut(s) 478
BshTI ACCGGT 1 cut(s) 475
BsiEI CGRYCG 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 5 cut(s) 363, 427, 476, 482, 599
BslI CCNNNNNNNGG 2 cut(s) 426, 433
Bsp119I TTCGAA 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 7 cut(s) 91, 313, 386, 408, 490, 518, 610
BspACI CCGC 3 cut(s) 219, 454, 602
BspCNI CTCAG 1 cut(s) 627
BspHI TCATGA 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 480
BspPI GGATC 2 cut(s) 526, 618
BspQI GCTCTTC 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 478
BsrFI RCCGGY 2 cut(s) 426, 475
BsrI ACTGG 1 cut(s) 105
BssAI RCCGGY 2 cut(s) 426, 475
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 7 cut(s) 91, 313, 386, 408, 490, 518, 610
BssNI GRCGYC 1 cut(s) 134
BssSI CACGAG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 382
Bst4CI ACNGT 3 cut(s) 348, 360, 379
Bst6I CTCTTC 4 cut(s) 111, 166, 505, 533
BstACI GRCGYC 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 614
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 7 cut(s) 94, 316, 389, 411, 493, 521, 613
BstMBI GATC 7 cut(s) 91, 313, 386, 408, 490, 518, 610
BstMCI CGRYCG 1 cut(s) 431
BstMWI GCNNNNNNNGC 2 cut(s) 74, 204
BstPAI GACNNNNGTC 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 143, 405
BstV2I GAAGAC 2 cut(s) 63, 231
BstX2I RGATCY 2 cut(s) 518, 610
BstYI RGATCY 2 cut(s) 518, 610
BsuI GTATCC 1 cut(s) 360
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 4 cut(s) 98, 193, 356, 375
Cac8I GCNNGC 1 cut(s) 154
CciI TCATGA 1 cut(s) 411
Cfr10I RCCGGY 2 cut(s) 426, 475
Cfr13I GGNCC 1 cut(s) 348
CpoI CGGWCCG 1 cut(s) 348
Csp6I GTAC 1 cut(s) 543
CspAI ACCGGT 1 cut(s) 475
CspI CGGWCCG 1 cut(s) 348
CviAII CATG 3 cut(s) 211, 311, 412
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 1 cut(s) 614
DpnI GATC 7 cut(s) 93, 315, 388, 410, 492, 520, 612
DpnII GATC 7 cut(s) 91, 313, 386, 408, 490, 518, 610
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eam1104I CTCTTC 4 cut(s) 111, 166, 505, 533
EarI CTCTTC 4 cut(s) 111, 166, 505, 533
EciI GGCGGA 2 cut(s) 208, 617
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 3 cut(s) 135, 169, 486
EcoICRI GAGCTC 1 cut(s) 198
EcoRI GAATTC 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 3 cut(s) 214, 314, 415
FaiI YATR 5 cut(s) 212, 251, 312, 413, 467
FatI CATG 3 cut(s) 210, 310, 411
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 157, 394
FokI GGATG 1 cut(s) 27
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 157, 394
FspBI CTAG 1 cut(s) 546
GluI GCNGC 2 cut(s) 157, 394
HapII CCGG 5 cut(s) 363, 427, 476, 482, 599
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 3 cut(s) 214, 314, 415
HinfI GANTC 2 cut(s) 301, 353
HpaII CCGG 5 cut(s) 363, 427, 476, 482, 599
HphI GGTGA 2 cut(s) 443, 465
Hpy188I TCNGA 5 cut(s) 169, 202, 321, 352, 532
Hpy188III TCNNGA 4 cut(s) 44, 382, 412, 625
Hpy99I CGWCG 2 cut(s) 345, 348
HpyAV CCTTC 2 cut(s) 265, 303
HpyCH4III ACNGT 3 cut(s) 348, 360, 379
HpyCH4IV ACGT 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 204
HpyF3I CTNAG 1 cut(s) 614
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 3 cut(s) 214, 314, 415
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 7 cut(s) 91, 313, 386, 408, 490, 518, 610
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 203, 289
LpnPI CCDG 9 cut(s) 57, 86, 206, 376, 427, 440, 489, 495, 612
Lsp1109I GCAGC 2 cut(s) 143, 405
MaeI CTAG 1 cut(s) 546
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 2 cut(s) 188, 379
MalI GATC 7 cut(s) 93, 315, 388, 410, 492, 520, 612
MboI GATC 7 cut(s) 91, 313, 386, 408, 490, 518, 610
MflI RGATCY 2 cut(s) 518, 610
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 3 cut(s) 35, 170, 593
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 4 cut(s) 64, 67, 175, 288
MroXI GAANNNNTTC 1 cut(s) 499
MspI CCGG 5 cut(s) 363, 427, 476, 482, 599
MspR9I CCNGG 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 74, 204
NciI CCSGG 1 cut(s) 364
NdeII GATC 7 cut(s) 91, 313, 386, 408, 490, 518, 610
NlaIII CATG 3 cut(s) 214, 314, 415
NlaIV GGNNCC 1 cut(s) 480
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 188, 379
NspV TTCGAA 1 cut(s) 299
PagI TCATGA 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 2 cut(s) 301, 353
PfoI TCCNGGA 1 cut(s) 362
PinAI ACCGGT 1 cut(s) 475
PkrI GCNGC 2 cut(s) 158, 395
PshAI GACNNNNGTC 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 1 cut(s) 348
PsuI RGATCY 2 cut(s) 518, 610
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
Rsr2I CGGWCCG 1 cut(s) 348
RsrII CGGWCCG 1 cut(s) 348
SacI GAGCTC 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 166
SatI GCNGC 2 cut(s) 157, 394
Sau3AI GATC 7 cut(s) 91, 313, 386, 408, 490, 518, 610
Sau96I GGNCC 1 cut(s) 348
ScaI AGTACT 1 cut(s) 544
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 1 cut(s) 200
SetI ASST 7 cut(s) 115, 137, 200, 209, 286, 337, 464
SfuI TTCGAA 1 cut(s) 299
SgrAI CRCCGGYG 1 cut(s) 475
SinI GGWCC 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 3 cut(s) 35, 170, 593
SsiI CCGC 3 cut(s) 219, 454, 602
SspMI CTAG 1 cut(s) 546
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 3 cut(s) 348, 360, 379
TaiI ACGT 1 cut(s) 137
TaqI TCGA 4 cut(s) 177, 299, 340, 493
TasI AATT 3 cut(s) 35, 170, 593
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 2 cut(s) 301, 353
TscAI CASTG 4 cut(s) 105, 193, 363, 382
TseFI GTSAC 2 cut(s) 188, 379
TseI GCWGC 2 cut(s) 156, 393
Tsp45I GTSAC 2 cut(s) 188, 379
TspDTI ATGAA 2 cut(s) 29, 199
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 4 cut(s) 105, 193, 363, 382
VpaK11BI GGWCC 1 cut(s) 348
XapI RAATTY 2 cut(s) 170, 593
XmnI GAANNNNTTC 1 cut(s) 499
XspI CTAG 1 cut(s) 546
ZraI GACGTC 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.