Rh4DG104900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015341
Physical Location & Seq
Forward (+)
16138553 .. 16139590
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG104900.1

Sequence Viewer

Length: 1038 bp
ATGTCGCTTTATAAAACTCCAAGAGATAAAAATATAAAACCCAGAATTAATAATAGTCCAAGAAAATTATCGACACAACACCTCCCCTGTCTTTATGTATATATACTCGCCTTGGTCTCTTCTCAATTAACAATTAAGCCATTGCTTCCAAACCATATATTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCTCTCTCTACAATCTACTCTCCTCGATCTCCAACAATGGGAGACGATAATACCAACAACACTGATTTTCAATTTCAACCAGACCCCTACTTAGACGAAGAAGCCGAGGAGGCACTTTCTCTCTGCGACCTTCCACTGGACACCGAAGCTGAAGAGTTCCACGATTTGTCGTCCAAGTTCCTAAACGCTCGCTGCTCTTCCTCCGAATTCTTCGAGTTCTTCAGTGACCACAGCTCCGATAGCTTCATGTGTTCCGCCGAAGACATCATCGTCTGTGGCAAACTCATACCCTTCAAAGAGAACACACCCACTCCTCAAGCTCCAAAGCCTTCTTCGAATCCCAAGCATGATCATCAGAAGAAACAGACAGCTTTTCGACGACGGTCCGAATCACTGTCCGGGATACAAAGCACCGTCACGAGATCAAGCAGCACCAAGAACAAGATCATGATGACCAACAGCCGGTCGTTGGATTACAGGAAACTTCACCGCCAAAGCTCGATGGTTTCACCGGTGCCTGAGATGGATCGAAACTCTTCAGTAAGGAGTGTGGGATCTTCAAAGTCCGATAAGAAGAGTACTAGTAGTGGTAAGCCAAAATGGTCATTTCTTTTGTTTGGGATTGTCAAATTTCCGGCGGAGATGGATCTCAGCGACATCAAGAGCCGGCAGGTCAGGAAAAACCCGTCTACCACTCTGTTTCCCGATACTTCCGTCGGGAAGTGTCCGTCGGTCAGTCGGAGCAACTCCGGTAACAAGGGCTCTTGGAAGCTGCTCAGGGCATTGAGCTGCAAGGATCATGCGAGTGTTTCTGTAACGACGTCGTACTACGTGTCGCAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

38.94

Weight (kDa)

9.26

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30230
fragaria_vesca FvH4_4g08220
malus_domestica MD13G1253900.v1.1 MD16G1257900.v1.1
prunus_persica Prupe.1G086100_v2.0.a1
pyrus_communis pycom13g22430
rosa_chinensis RchiOBHm_Chr4g0402471
rosa_laevigata RLG00000009081
rosa_multiflora Rmu_co8180070.1_g000001 Rmu_ssc0000330.1_g000029
rosa_roxburghii Rroxscaffold_5G00347160
rosa_rugosa Rorug04G0035700
rosa_samantha Rh4BG105500 Rh4CG119900 Rh4DG104900
rosa_wichuraiana Rw4G009060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
AasI GACNNNNNNGTC 1 cut(s) 461
AatII GACGTC 1 cut(s) 1016
Acc36I ACCTGC 1 cut(s) 853
AccB1I GGYRCC 1 cut(s) 706
AccI GTMKAC 1 cut(s) 881
AciI CCGC 3 cut(s) 447, 682, 830
AclWI GGATC 4 cut(s) 726, 754, 846, 996
AcsI RAATTY 2 cut(s) 398, 821
AcuI CTGAAG 3 cut(s) 363, 397, 714
AcyI GRCGYC 1 cut(s) 1013
AfaI GTAC 2 cut(s) 772, 1019
AfiI CCNNNNNNNGG 4 cut(s) 230, 328, 654, 661
AflIII ACRYGT 1 cut(s) 1023
AgeI ACCGGT 1 cut(s) 703
AgsI TTSAA 4 cut(s) 263, 269, 487, 753
AhlI ACTAGT 1 cut(s) 773
AjuI GAANNNNNNNTTGG 2 cut(s) 508, 540
AluBI AGCT 8 cut(s) 341, 426, 435, 512, 563, 690, 964, 981
AluI AGCT 8 cut(s) 341, 426, 435, 512, 563, 690, 964, 981
Alw26I GTCTC 2 cut(s) 121, 228
AlwI GGATC 4 cut(s) 726, 754, 846, 996
ApeKI GCWGC 4 cut(s) 384, 621, 964, 981
ApoI RAATTY 2 cut(s) 398, 821
AseI ATTAAT 1 cut(s) 48
AsiGI ACCGGT 1 cut(s) 703
Asp700I GAANNNNTTC 1 cut(s) 727
AspS9I GGNCC 1 cut(s) 576
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 671, 693
AsuII TTCGAA 1 cut(s) 527
AvaII GGWCC 1 cut(s) 576
BaeI ACNNNNGTAYC 2 cut(s) 891, 924
BanI GGYRCC 1 cut(s) 706
BanII GRGCYC 1 cut(s) 956
BauI CACGAG 1 cut(s) 610
BbsI GAAGAC 1 cut(s) 459
BbvI GCAGC 4 cut(s) 371, 633, 951, 968
BccI CCATC 3 cut(s) 688, 709, 829
BciVI GTATCC 1 cut(s) 588
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 2 cut(s) 121, 228
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 1 cut(s) 774
BfuAI ACCTGC 1 cut(s) 853
BfuI GTATCC 1 cut(s) 588
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 4 cut(s) 385, 622, 965, 982
BlsI GCNGC 4 cut(s) 386, 623, 966, 983
BmcAI AGTACT 1 cut(s) 772
Bme1390I CCNGG 1 cut(s) 592
Bme18I GGWCC 1 cut(s) 576
BmgT120I GGNCC 1 cut(s) 576
BmiI GGNNCC 1 cut(s) 708
BmrFI CCNGG 1 cut(s) 592
BoxI GACNNNNGTC 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 459
Bpu10I CCTNAGC 1 cut(s) 968
Bpu14I TTCGAA 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 592
BsaAI YACGTR 1 cut(s) 1024
BsaHI GRCGYC 1 cut(s) 1013
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 111, 297
BsaWI WCCGGW 2 cut(s) 703, 941
BsaXI ACNNNNNCTCC 6 cut(s) 66, 96, 410, 440, 487, 517
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 328, 654, 661
Bse118I RCCGGY 3 cut(s) 654, 703, 858
Bse1I ACTGG 1 cut(s) 333
Bse3DI GCAATG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 111, 297
BseLI CCNNNNNNNGG 4 cut(s) 230, 328, 654, 661
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 3 cut(s) 702, 856, 982
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 3 cut(s) 204, 314, 495
BseXI GCAGC 4 cut(s) 371, 633, 951, 968
Bsh1285I CGRYCG 1 cut(s) 659
BshNI GGYRCC 1 cut(s) 706
BshTI ACCGGT 1 cut(s) 703
BsiEI CGRYCG 1 cut(s) 659
BsiSI CCGG 6 cut(s) 591, 655, 704, 827, 859, 942
BslI CCNNNNNNNGG 4 cut(s) 230, 328, 654, 661
BsmAI GTCTC 2 cut(s) 121, 228
BsmBI CGTCTC 1 cut(s) 228
Bso31I GGTCTC 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 956
Bsp143I GATC 8 cut(s) 218, 541, 614, 636, 718, 746, 838, 988
BspACI CCGC 3 cut(s) 447, 682, 830
BspCNI CTCAG 3 cut(s) 703, 855, 981
BspHI TCATGA 1 cut(s) 639
BspLI GGNNCC 1 cut(s) 708
BspMI ACCTGC 1 cut(s) 853
BspPI GGATC 4 cut(s) 726, 754, 846, 996
BspQI GCTCTTC 1 cut(s) 394
BspT104I TTCGAA 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 706
BspTNI GGTCTC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 140
BsrFI RCCGGY 3 cut(s) 654, 703, 858
BsrI ACTGG 1 cut(s) 333
BssAI RCCGGY 3 cut(s) 654, 703, 858
BssECI CCNNGG 2 cut(s) 111, 297
BssMI GATC 8 cut(s) 218, 541, 614, 636, 718, 746, 838, 988
BssNI GRCGYC 1 cut(s) 1013
BssSI CACGAG 1 cut(s) 610
BssT1I CCWWGG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 610
Bst4CI ACNGT 3 cut(s) 576, 588, 607
Bst6I CTCTTC 5 cut(s) 124, 339, 394, 733, 761
BstACI GRCGYC 1 cut(s) 1013
BstBAI YACGTR 1 cut(s) 1024
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 2 cut(s) 382, 860
BstDEI CTNAG 4 cut(s) 283, 711, 842, 968
BstKTI GATC 8 cut(s) 221, 544, 617, 639, 721, 749, 841, 991
BstMAI GTCTC 2 cut(s) 121, 228
BstMBI GATC 8 cut(s) 218, 541, 614, 636, 718, 746, 838, 988
BstMCI CGRYCG 1 cut(s) 659
BstMWI GCNNNNNNNGC 2 cut(s) 302, 432
BstPAI GACNNNNGTC 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 590
BstV1I GCAGC 4 cut(s) 371, 633, 951, 968
BstV2I GAAGAC 1 cut(s) 459
BstX2I RGATCY 2 cut(s) 746, 838
BstYI RGATCY 2 cut(s) 746, 838
BsuI GTATCC 1 cut(s) 588
BtsIMutI CAGTG 4 cut(s) 252, 326, 421, 584
BveI ACCTGC 1 cut(s) 853
Cac8I GCNNGC 2 cut(s) 382, 860
CciI TCATGA 1 cut(s) 639
Cfr10I RCCGGY 3 cut(s) 654, 703, 858
Cfr13I GGNCC 1 cut(s) 576
CpoI CGGWCCG 1 cut(s) 576
Csp6I GTAC 2 cut(s) 771, 1018
CspAI ACCGGT 1 cut(s) 703
CspI CGGWCCG 1 cut(s) 576
CviAII CATG 4 cut(s) 439, 539, 640, 992
CviQI GTAC 2 cut(s) 771, 1018
DdeI CTNAG 4 cut(s) 283, 711, 842, 968
DpnI GATC 8 cut(s) 220, 543, 616, 638, 720, 748, 840, 990
DpnII GATC 8 cut(s) 218, 541, 614, 636, 718, 746, 838, 988
DrdI GACNNNNNNGTC 1 cut(s) 461
DseDI GACNNNNNNGTC 1 cut(s) 461
Eam1104I CTCTTC 5 cut(s) 124, 339, 394, 733, 761
EarI CTCTTC 5 cut(s) 124, 339, 394, 733, 761
EciI GGCGGA 2 cut(s) 436, 845
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 956
Eco31I GGTCTC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 576
Eco57I CTGAAG 3 cut(s) 363, 397, 714
EcoRI GAATTC 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 956
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 4 cut(s) 442, 542, 643, 995
FatI CATG 4 cut(s) 438, 538, 639, 991
FbaI TGATCA 1 cut(s) 541
FblI GTMKAC 1 cut(s) 881
Fnu4HI GCNGC 4 cut(s) 385, 622, 965, 982
FriOI GRGCYC 1 cut(s) 956
Fsp4HI GCNGC 4 cut(s) 385, 622, 965, 982
FspBI CTAG 1 cut(s) 774
GluI GCNGC 4 cut(s) 385, 622, 965, 982
HapII CCGG 6 cut(s) 591, 655, 704, 827, 859, 942
Hin1I GRCGYC 1 cut(s) 1013
Hin1II CATG 4 cut(s) 442, 542, 643, 995
HinfI GANTC 2 cut(s) 529, 581
HpaII CCGG 6 cut(s) 591, 655, 704, 827, 859, 942
HphI GGTGA 2 cut(s) 671, 693
Hpy166II GTNNAC 1 cut(s) 882
Hpy188I TCNGA 6 cut(s) 397, 430, 549, 580, 760, 933
Hpy188III TCNNGA 6 cut(s) 610, 640, 853, 868, 896, 910
Hpy8I GTNNAC 1 cut(s) 882
Hpy99I CGWCG 6 cut(s) 573, 576, 911, 925, 1015, 1018
HpyAV CCTTC 3 cut(s) 332, 493, 531
HpyCH4III ACNGT 3 cut(s) 576, 588, 607
HpyCH4IV ACGT 2 cut(s) 1013, 1023
HpyCH4V TGCA 1 cut(s) 984
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 432
HpyF3I CTNAG 4 cut(s) 283, 711, 842, 968
HpySE526I ACGT 2 cut(s) 1013, 1023
Hsp92I GRCGYC 1 cut(s) 1013
Hsp92II CATG 4 cut(s) 442, 542, 643, 995
KroI GCCGGC 1 cut(s) 858
KroNI GCCGGC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 8 cut(s) 218, 541, 614, 636, 718, 746, 838, 988
LguI GCTCTTC 1 cut(s) 394
LmnI GCTCC 3 cut(s) 431, 517, 933
Lsp1109I GCAGC 4 cut(s) 371, 633, 951, 968
MaeI CTAG 1 cut(s) 774
MaeII ACGT 2 cut(s) 1013, 1023
MaeIII GTNAC 4 cut(s) 416, 607, 944, 1006
MalI GATC 8 cut(s) 220, 543, 616, 638, 720, 748, 840, 990
MboI GATC 8 cut(s) 218, 541, 614, 636, 718, 746, 838, 988
MflI RGATCY 2 cut(s) 746, 838
MhlI GDGCHC 1 cut(s) 956
MluCI AATT 7 cut(s) 45, 65, 125, 132, 263, 398, 821
MmeI TCCRAC 3 cut(s) 248, 642, 911
MnlI CCTC 6 cut(s) 92, 225, 292, 295, 403, 516
MroNI GCCGGC 1 cut(s) 858
MroXI GAANNNNTTC 1 cut(s) 727
MseI TTAA 3 cut(s) 48, 128, 135
MslI CAYNNNNRTG 1 cut(s) 996
MspI CCGG 6 cut(s) 591, 655, 704, 827, 859, 942
MspR9I CCNGG 1 cut(s) 592
MwoI GCNNNNNNNGC 2 cut(s) 302, 432
NaeI GCCGGC 1 cut(s) 860
NciI CCSGG 1 cut(s) 592
NdeII GATC 8 cut(s) 218, 541, 614, 636, 718, 746, 838, 988
NgoMIV GCCGGC 1 cut(s) 858
NlaIII CATG 4 cut(s) 442, 542, 643, 995
NlaIV GGNNCC 1 cut(s) 708
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 416, 607
NspV TTCGAA 1 cut(s) 527
PagI TCATGA 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PdiI GCCGGC 1 cut(s) 860
PdmI GAANNNNTTC 1 cut(s) 727
PfeI GAWTC 2 cut(s) 529, 581
PfoI TCCNGGA 1 cut(s) 590
PinAI ACCGGT 1 cut(s) 703
PkrI GCNGC 4 cut(s) 386, 623, 966, 983
Ppu21I YACGTR 1 cut(s) 1024
PshAI GACNNNNGTC 1 cut(s) 574
PshBI ATTAAT 1 cut(s) 48
PsiI TTATAA 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 708
PspPI GGNCC 1 cut(s) 576
PsuI RGATCY 2 cut(s) 746, 838
RsaI GTAC 2 cut(s) 772, 1019
RsaNI GTAC 2 cut(s) 771, 1018
RseI CAYNNNNRTG 1 cut(s) 996
Rsr2I CGGWCCG 1 cut(s) 576
RsrII CGGWCCG 1 cut(s) 576
SapI GCTCTTC 1 cut(s) 394
SaqAI TTAA 3 cut(s) 48, 128, 135
SatI GCNGC 4 cut(s) 385, 622, 965, 982
Sau3AI GATC 8 cut(s) 218, 541, 614, 636, 718, 746, 838, 988
Sau96I GGNCC 1 cut(s) 576
ScaI AGTACT 1 cut(s) 772
ScrFI CCNGG 1 cut(s) 592
SduI GDGCHC 1 cut(s) 956
SfuI TTCGAA 1 cut(s) 527
SgrAI CRCCGGYG 1 cut(s) 703
SinI GGWCC 1 cut(s) 576
SmiMI CAYNNNNRTG 1 cut(s) 996
SmlI CTYRAG 1 cut(s) 507
SmoI CTYRAG 1 cut(s) 507
SpeI ACTAGT 1 cut(s) 773
Sse9I AATT 7 cut(s) 45, 65, 125, 132, 263, 398, 821
SsiI CCGC 3 cut(s) 447, 682, 830
SspMI CTAG 1 cut(s) 774
StyD4I CCNGG 1 cut(s) 590
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 3 cut(s) 576, 588, 607
TaiI ACGT 2 cut(s) 1016, 1026
TaqI TCGA 7 cut(s) 71, 217, 405, 527, 568, 692, 721
TaqII GACCGA 1 cut(s) 913
TasI AATT 7 cut(s) 45, 65, 125, 132, 263, 398, 821
TatI WGTACW 1 cut(s) 770
TfiI GAWTC 2 cut(s) 529, 581
Tru1I TTAA 3 cut(s) 48, 128, 135
Tru9I TTAA 3 cut(s) 48, 128, 135
TscAI CASTG 4 cut(s) 259, 333, 421, 591
TseFI GTSAC 2 cut(s) 416, 607
TseI GCWGC 4 cut(s) 384, 621, 964, 981
Tsp45I GTSAC 2 cut(s) 416, 607
TspDTI ATGAA 1 cut(s) 427
TspGWI ACGGA 2 cut(s) 895, 909
TspRI CASTG 4 cut(s) 259, 333, 421, 591
VpaK11BI GGWCC 1 cut(s) 576
VspI ATTAAT 1 cut(s) 48
XapI RAATTY 2 cut(s) 398, 821
XmiI GTMKAC 1 cut(s) 881
XmnI GAANNNNTTC 1 cut(s) 727
XspI CTAG 1 cut(s) 774
ZraI GACGTC 1 cut(s) 1014
ZrmI AGTACT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.