Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007350

Physical Location & Seq

Genomic Coordinates Reverse (-)

14905097 .. 14907645

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G30510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCGAATCTGTCCTCTCTTCCTTCTCCTATCTATTGTGTTTCTTTCAATCAAGATAACAGTGGTTTTGCGATAAGTTGGAAAGATTCCTTCAAAATATTCGATTCCACTACAGGCAGACTCTGCTATGAACGAGCTGCTGGAGCCTTTGTTATTGTTGAGATGTTGTATAGCTCAGATCTACTTGCAATTGTTGGAGCTGGTGAACAGGCTTCTCTATCCCCACGGCGTCTTTGTTTGTTCAAGACCACAACGGGTTTACCTCTTAGGGAATTGAATTTTTTAACTTCTATACTCGCTGTTCGTATGAACAAGAAAAGACTTGTTGTTGTGCTGCTAGAGAAAACATTCGTTTACGACTTGAATACTCTTGTCATGCTTGATACTATCGACACCGTGCCAAATCCAAAAGGTCTATCTGCATTCTCTCCATCTCTTGAAGGCTGCTACTTAGCTGTTCCAGCTAGTACGACGAAAGGATCTGTTTTGGTGTATAACGTCATGGATTTGCAGTCTCATAGTGAGATTGATGCACATCGTTCTCCATTGGCTGCGATTGCACTGTCTTCAAATGGAATGTACATTGCTACAGGATCTGAGCAAGGAACCTTGATCCGAGTCCATCTTGTTTCAGAAGCAACTAAGTCATATAGTTTCAGGAGAGGAACATACCCATCTACTATATATTCACTGTCTTTTGGACCATCGACACAGCTTCCAGATATATTAATTGCAACTAGTTCTTCAGGCTCCATTCATGCCTTCTCTTTAAGTTTGGCCATAAACCAAAGAAGCAAAAGGTCTACTAGCTTTCTTGGATCGGTTCTTCCCGACAGTGTGAGTGATGCACTAGATCCAGCTCATCATCATGTGCTTCAAAACGCAGTTTCTTCCGGGATTAGAAGTTATGCCGTGGTTAGGAAGATAGACAAACTTGAAGGAACATCATCTCCATCTCATTTTACATCTCTTAGAGCAACGGTATCGGTGATCACTTATAACGGATATTTCCAGGAGTATACGCTAAGTATCAATAACAAGAATGAGTCTCTATGGACACTGGAACGTGAATTCAATCTCTTCTCCATAACCACCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

39.88

Weight (kDa)

8.26

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	12 - 273	9.5e-36	PROPPIN
Beta-prop_WDR3_1st	PF25173	108 - 258	1.3e-06	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	119 - 206	8.5e-06	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	149 - 235	3.5e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30510 AT4G30510
fragaria_vesca	FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740
malus_domestica	MD16G1259300.v1.1
prunus_persica	Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1
pyrus_communis	pycom16g22700
rosa_chinensis	RchiOBHm_Chr4g0405281
rosa_laevigata	RLG00000008860
rosa_multiflora	Rmu_sc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_5G00349620
rosa_rugosa	Rorug04G0056300 Rorug04G0056400 Rorug04G0056500
rosa_samantha	Rh4AG130200 Rh4BG124600 Rh4DG123800
rosa_wichuraiana	Rw4G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	999
AccI	GTMKAC	2 cut(s)	803, 1019
AclWI	GGATC	5 cut(s)	487, 601, 607, 826, 848
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	2 cut(s)	277, 1070
AcuI	CTGAAG	1 cut(s)	729
AcyI	GRCGYC	1 cut(s)	229
AdeI	CACNNNGTG	1 cut(s)	1098
AfaI	GTAC	2 cut(s)	469, 581
AfiI	CCNNNNNNNGG	1 cut(s)	918
AhlI	ACTAGT	1 cut(s)	737
AjnI	CCWGG	1 cut(s)	1011
AloI	GAACNNNNNNTCC	2 cut(s)	934, 966
AluBI	AGCT	8 cut(s)	137, 174, 200, 455, 464, 715, 810, 860
AluI	AGCT	8 cut(s)	137, 174, 200, 455, 464, 715, 810, 860
Alw26I	GTCTC	2 cut(s)	519, 1053
AlwI	GGATC	5 cut(s)	487, 601, 607, 826, 848
AlwNI	CAGNNNCTG	2 cut(s)	123, 596
AoxI	GGCC	1 cut(s)	777
ApeKI	GCWGC	4 cut(s)	137, 334, 444, 551
ApoI	RAATTY	2 cut(s)	277, 1070
AseI	ATTAAT	1 cut(s)	728
Asp700I	GAANNNNTTC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	701
AsuC2I	CCSGG	2 cut(s)	895, 1096
AsuHPI	GGTGA	2 cut(s)	215, 1000
AvaII	GGWCC	1 cut(s)	701
BalI	TGGCCA	1 cut(s)	779
BbsI	GAAGAC	1 cut(s)	558
BbvI	GCAGC	4 cut(s)	124, 321, 431, 538
BccI	CCATC	5 cut(s)	439, 630, 682, 712, 961
BceAI	ACGGC	2 cut(s)	242, 896
BcgI	CGANNNNNNTGC	2 cut(s)	966, 1000
BciT130I	CCWGG	1 cut(s)	1013
BclI	TGATCA	1 cut(s)	990
BcnI	CCSGG	2 cut(s)	895, 1096
BcoDI	GTCTC	2 cut(s)	519, 1053
BcuI	ACTAGT	1 cut(s)	737
BfaI	CTAG	5 cut(s)	338, 465, 738, 807, 851
BfmI	CTRYAG	2 cut(s)	111, 588
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	4 cut(s)	138, 335, 445, 552
BlsI	GCNGC	4 cut(s)	139, 336, 446, 553
Bme1390I	CCNGG	3 cut(s)	895, 1013, 1096
Bme18I	GGWCC	1 cut(s)	701
BmgT120I	GGNCC	1 cut(s)	701
BmiI	GGNNCC	3 cut(s)	145, 607, 751
BmrFI	CCNGG	3 cut(s)	895, 1013, 1096
BmsI	GCATC	2 cut(s)	520, 835
BpiI	GAAGAC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	162
BpuMI	CCSGG	2 cut(s)	895, 1096
BsaBI	GATNNNNATC	1 cut(s)	534
BsaHI	GRCGYC	1 cut(s)	229
BsaJI	CCNNGG	2 cut(s)	224, 912
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 934, 964
Bsc4I	CCNNNNNNNGG	1 cut(s)	918
Bse1I	ACTGG	1 cut(s)	1065
Bse3DI	GCAATG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	1013
BseDI	CCNNGG	2 cut(s)	224, 912
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	1 cut(s)	918
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	189, 588
BseNI	ACTGG	1 cut(s)	1065
BseXI	GCAGC	4 cut(s)	124, 321, 431, 538
BshFI	GGCC	1 cut(s)	779
BsiSI	CCGG	2 cut(s)	894, 1095
BslI	CCNNNNNNNGG	1 cut(s)	918
BsmAI	GTCTC	2 cut(s)	519, 1053
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	779
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	7 cut(s)	178, 479, 593, 612, 818, 853, 990
BspANI	GGCC	1 cut(s)	779
BspCNI	CTCAG	2 cut(s)	188, 589
BspLI	GGNNCC	3 cut(s)	145, 607, 751
BspPI	GGATC	5 cut(s)	487, 601, 607, 826, 848
BsrDI	GCAATG	1 cut(s)	582
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	1065
BssECI	CCNNGG	2 cut(s)	224, 912
BssMI	GATC	7 cut(s)	178, 479, 593, 612, 818, 853, 990
BssNAI	GTATAC	1 cut(s)	1020
BssNI	GRCGYC	1 cut(s)	229
Bst1107I	GTATAC	1 cut(s)	1020
Bst2UI	CCWGG	1 cut(s)	1013
Bst4CI	ACNGT	6 cut(s)	62, 397, 564, 693, 836, 982
Bst6I	CTCTTC	2 cut(s)	24, 1085
BstACI	GRCGYC	1 cut(s)	229
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	579
BstDEI	CTNAG	7 cut(s)	175, 266, 451, 597, 642, 971, 1025
BstDSI	CCRYGG	2 cut(s)	224, 912
BstKTI	GATC	7 cut(s)	181, 482, 596, 615, 821, 856, 993
BstMAI	GTCTC	2 cut(s)	519, 1053
BstMBI	GATC	7 cut(s)	178, 479, 593, 612, 818, 853, 990
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 143, 461, 557
BstNI	CCWGG	1 cut(s)	1013
BstSCI	CCNGG	3 cut(s)	893, 1011, 1094
BstSFI	CTRYAG	2 cut(s)	111, 588
BstV1I	GCAGC	4 cut(s)	124, 321, 431, 538
BstV2I	GAAGAC	1 cut(s)	558
BstX2I	RGATCY	4 cut(s)	178, 479, 593, 853
BstYI	RGATCY	4 cut(s)	178, 479, 593, 853
BstZ17I	GTATAC	1 cut(s)	1020
BsuRI	GGCC	1 cut(s)	779
BtgI	CCRYGG	2 cut(s)	224, 912
BtsIMutI	CAGTG	5 cut(s)	67, 560, 689, 841, 1058
CaiI	CAGNNNCTG	2 cut(s)	123, 596
Cfr13I	GGNCC	1 cut(s)	701
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	468, 580
CviAII	CATG	4 cut(s)	376, 502, 758, 869
CviQI	GTAC	2 cut(s)	468, 580
DdeI	CTNAG	7 cut(s)	175, 266, 451, 597, 642, 971, 1025
DpnI	GATC	7 cut(s)	180, 481, 595, 614, 820, 855, 992
DpnII	GATC	7 cut(s)	178, 479, 593, 612, 818, 853, 990
DraIII	CACNNNGTG	1 cut(s)	1098
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	2 cut(s)	24, 1085
EarI	CTCTTC	2 cut(s)	24, 1085
Eco47I	GGWCC	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	729
EcoRI	GAATTC	1 cut(s)	1070
EcoRII	CCWGG	1 cut(s)	1011
FaeI	CATG	4 cut(s)	379, 505, 761, 872
FatI	CATG	4 cut(s)	375, 501, 757, 868
FbaI	TGATCA	1 cut(s)	990
FblI	GTMKAC	2 cut(s)	803, 1019
Fnu4HI	GCNGC	4 cut(s)	138, 335, 445, 552
Fsp4HI	GCNGC	4 cut(s)	138, 335, 445, 552
FspBI	CTAG	5 cut(s)	338, 465, 738, 807, 851
GluI	GCNGC	4 cut(s)	138, 335, 445, 552
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	779
HapII	CCGG	2 cut(s)	894, 1095
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	4 cut(s)	379, 505, 761, 872
HinfI	GANTC	6 cut(s)	7, 86, 104, 120, 618, 1046
HpaII	CCGG	2 cut(s)	894, 1095
HphI	GGTGA	2 cut(s)	215, 1000
Hpy166II	GTNNAC	5 cut(s)	206, 260, 355, 804, 1020
Hpy188I	TCNGA	4 cut(s)	178, 598, 617, 634
Hpy188III	TCNNGA	6 cut(s)	53, 244, 437, 658, 719, 830
Hpy8I	GTNNAC	5 cut(s)	206, 260, 355, 804, 1020
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	5 cut(s)	33, 100, 434, 772, 932
HpyCH4III	ACNGT	6 cut(s)	62, 397, 564, 693, 836, 982
HpyCH4IV	ACGT	2 cut(s)	498, 1066
HpyCH4V	TGCA	7 cut(s)	188, 422, 511, 533, 560, 734, 848
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 143, 461, 557
HpyF3I	CTNAG	7 cut(s)	175, 266, 451, 597, 642, 971, 1025
HpySE526I	ACGT	2 cut(s)	498, 1066
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	4 cut(s)	379, 505, 761, 872
Ksp22I	TGATCA	1 cut(s)	990
Kzo9I	GATC	7 cut(s)	178, 479, 593, 612, 818, 853, 990
LmnI	GCTCC	3 cut(s)	143, 197, 755
Lsp1109I	GCAGC	4 cut(s)	124, 321, 431, 538
LweI	GCATC	2 cut(s)	520, 835
MaeI	CTAG	5 cut(s)	338, 465, 738, 807, 851
MaeII	ACGT	2 cut(s)	498, 1066
MalI	GATC	7 cut(s)	180, 481, 595, 614, 820, 855, 992
MboI	GATC	7 cut(s)	178, 479, 593, 612, 818, 853, 990
MboII	GAAGA	7 cut(s)	11, 558, 735, 818, 882, 934, 1072
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	4 cut(s)	178, 479, 593, 853
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	5 cut(s)	189, 272, 277, 729, 1070
MluNI	TGGCCA	1 cut(s)	779
MlyI	GAGTC	3 cut(s)	114, 627, 1055
MmeI	TCCRAC	2 cut(s)	59, 175
MnlI	CCTC	3 cut(s)	25, 273, 656
Mox20I	TGGCCA	1 cut(s)	779
MroXI	GAANNNNTTC	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	3 cut(s)	284, 728, 770
MslI	CAYNNNNRTG	1 cut(s)	867
Msp20I	TGGCCA	1 cut(s)	779
MspI	CCGG	2 cut(s)	894, 1095
MspR9I	CCNGG	3 cut(s)	895, 1013, 1096
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	1013
MwoI	GCNNNNNNNGC	4 cut(s)	123, 143, 461, 557
NciI	CCSGG	2 cut(s)	895, 1096
NdeII	GATC	7 cut(s)	178, 479, 593, 612, 818, 853, 990
NlaIII	CATG	4 cut(s)	379, 505, 761, 872
NlaIV	GGNNCC	3 cut(s)	145, 607, 751
PctI	GAATGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	7, 86, 104
PfoI	TCCNGGA	2 cut(s)	893, 1011
PkrI	GCNGC	4 cut(s)	139, 336, 446, 553
PleI	GAGTC	3 cut(s)	114, 626, 1054
PpsI	GAGTC	3 cut(s)	114, 626, 1054
PshBI	ATTAAT	1 cut(s)	728
PsiI	TTATAA	1 cut(s)	999
Psp6I	CCWGG	1 cut(s)	1011
PspGI	CCWGG	1 cut(s)	1011
PspN4I	GGNNCC	3 cut(s)	145, 607, 751
PspPI	GGNCC	1 cut(s)	701
PstNI	CAGNNNCTG	2 cut(s)	123, 596
PsuI	RGATCY	4 cut(s)	178, 479, 593, 853
RsaI	GTAC	2 cut(s)	469, 581
RsaNI	GTAC	2 cut(s)	468, 580
RseI	CAYNNNNRTG	1 cut(s)	867
SaqAI	TTAA	3 cut(s)	284, 728, 770
SatI	GCNGC	4 cut(s)	138, 335, 445, 552
Sau3AI	GATC	7 cut(s)	178, 479, 593, 612, 818, 853, 990
Sau96I	GGNCC	1 cut(s)	701
SchI	GAGTC	3 cut(s)	114, 627, 1055
ScrFI	CCNGG	3 cut(s)	895, 1013, 1096
SfaNI	GCATC	2 cut(s)	520, 835
SfcI	CTRYAG	2 cut(s)	111, 588
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	867
SpeI	ACTAGT	1 cut(s)	737
Sse9I	AATT	5 cut(s)	189, 272, 277, 729, 1070
SspI	AATATT	1 cut(s)	99
SspMI	CTAG	5 cut(s)	338, 465, 738, 807, 851
StyD4I	CCNGG	3 cut(s)	893, 1011, 1094
TaaI	ACNGT	6 cut(s)	62, 397, 564, 693, 836, 982
TaiI	ACGT	2 cut(s)	501, 1069
TaqI	TCGA	3 cut(s)	102, 390, 707
TasI	AATT	5 cut(s)	189, 272, 277, 729, 1070
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	3 cut(s)	7, 86, 104
Tru1I	TTAA	3 cut(s)	284, 728, 770
Tru9I	TTAA	3 cut(s)	284, 728, 770
TscAI	CASTG	5 cut(s)	67, 567, 696, 841, 1065
TseI	GCWGC	4 cut(s)	137, 334, 444, 551
TspDTI	ATGAA	3 cut(s)	144, 323, 746
TspGWI	ACGGA	1 cut(s)	1017
TspRI	CASTG	5 cut(s)	67, 567, 696, 841, 1065
VpaK11BI	GGWCC	1 cut(s)	701
VspI	ATTAAT	1 cut(s)	728
XapI	RAATTY	2 cut(s)	277, 1070
XmiI	GTMKAC	2 cut(s)	803, 1019
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	5 cut(s)	338, 465, 738, 807, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.