Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007350

Physical Location & Seq

Genomic Coordinates Reverse (-)

9317235 .. 9322093

Gene Structure 4859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08740.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCAAACCAGTCCTCCTCCTCTTCTTCCTACCCAGTCCTCTGCGCTTCCTTCAACCAAGACTCCAGTTGCTTTGCCATAGGCACAAAGCATGGCTTCAGAGTCTTCGATTCCAATACAGGCAGACTCTGCTATGAACGAGCTATTGGAGCTTTCGTTATTGTTGAAATGCTGTTTTGCTCTAGTCTTCTTGCCATTGTTGGAGCTGGTGAAGAGCCATCTTTATCGCCGCGCCGTCTCTGTTTGTTCAATAAAACAACTGGAACTGCTCTCCGTGAATTGAATTTTTTAACTTCAATACTTGCCGTTCGTATGAATAGGAAAAGACTTGTTGTCATCTTACAAGACAAAACATATGTATATGACATAAATAGTCTTGCAATCTTGGACACTATTGATACTGTATCAAATTTAAAAGGGCTTTGCGCATTCTCCCCAAGTTTGGATGGATGTTTCTTGGCTATACCTGCCAGCATCTCCAAAGGATCCGTGTTGTTGTACAATGTTATGGACCTGCATTTACATTGTGAGATTGATGCTCATAGAGCCCCACTTGCTGCAATTGCACTTTCTTCCAATGGGATGTACATAGCAACAGCATCCGAACAGGGAACCATTATCAGAGTCCATCTAGTCTCAGAAGCAACAAAGTCATATAGCTTCCGGAGAGGGACATATCCATCAACTATATTCTCCTTATCATTTGCGCCATCTACGCAACTGCCAGATGTTCTCGTGTGCACAAGTTCATCAGGGTCTGTTCATGCTTTCTCGCTTGGGTTTTCTGGTTACCAGAGGAGCAAAAGATCGGGAAGTTTTCTTGGATCAATTATACCCGACTCTGTTACTGATGCACTAGATCCAGCATATCACGATGTACTTCATAATGTTGCACCTGTAGGGGTTAAAAGCTATGCAGTGATTCGTAAGATTGAGAAGGTTGCTGATGCATCAACTTCAGATATCGTGGCATGTCGGGCCACTATTTCTATTATCAGCTACAGCGGGTACTTCCAGGAGTACAACTTAAGCATCAACAATCAAAATGAGTTCTTGTGGAGTTTGGAGCGTGAATTTAAGCTACTGAATGTCATTTTAGATGATGCCATCAGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

40.43

Weight (kDa)

6.7

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	14 - 297	1.6e-41	PROPPIN
WD40_Prp19	PF24814	106 - 206	7.9e-07	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	124 - 249	2e-06	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30510 AT4G30510
fragaria_vesca	FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740
malus_domestica	MD16G1259300.v1.1
prunus_persica	Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1
pyrus_communis	pycom16g22700
rosa_chinensis	RchiOBHm_Chr4g0405281
rosa_laevigata	RLG00000008860
rosa_multiflora	Rmu_sc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_5G00349620
rosa_rugosa	Rorug04G0056300 Rorug04G0056400 Rorug04G0056500
rosa_samantha	Rh4AG130200 Rh4BG124600 Rh4DG123800
rosa_wichuraiana	Rw4G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	427
Acc36I	ACCTGC	2 cut(s)	475, 522
AccII	CGCG	1 cut(s)	232
AccIII	TCCGGA	1 cut(s)	663
AciI	CCGC	2 cut(s)	230, 1005
AclWI	GGATC	4 cut(s)	480, 493, 832, 854
AcsI	RAATTY	3 cut(s)	283, 409, 1073
AcuI	CTGAAG	2 cut(s)	82, 942
AfaI	GTAC	5 cut(s)	500, 587, 879, 1010, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	442
AflII	CTTAAG	1 cut(s)	1027
AgsI	TTSAA	5 cut(s)	55, 167, 250, 283, 297
AhdI	GACNNNNNGTC	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	8 cut(s)	143, 152, 206, 660, 912, 999, 1081, 1113
AluI	AGCT	8 cut(s)	143, 152, 206, 660, 912, 999, 1081, 1113
Alw21I	GWGCWC	1 cut(s)	743
Alw26I	GTCTC	2 cut(s)	242, 640
Alw44I	GTGCAC	1 cut(s)	739
AlwI	GGATC	4 cut(s)	480, 493, 832, 854
AlwNI	CAGNNNCTG	2 cut(s)	129, 758
Aor13HI	TCCGGA	1 cut(s)	663
AoxI	GGCC	1 cut(s)	978
ApaLI	GTGCAC	1 cut(s)	739
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	3 cut(s)	283, 409, 1073
AspLEI	GCGC	4 cut(s)	47, 234, 428, 709
AspS9I	GGNCC	2 cut(s)	511, 978
AsuHPI	GGTGA	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	743
BamHI	GGATCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	550
BauI	CACGAG	1 cut(s)	734
BbsI	GAAGAC	2 cut(s)	97, 179
Bbv12I	GWGCWC	1 cut(s)	743
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	6 cut(s)	226, 440, 636, 688, 718, 1115
BceAI	ACGGC	2 cut(s)	219, 290
BciT130I	CCWGG	1 cut(s)	1016
BcoDI	GTCTC	2 cut(s)	242, 640
BfaI	CTAG	3 cut(s)	183, 632, 857
BfmI	CTRYAG	2 cut(s)	897, 1000
BfrI	CTTAAG	1 cut(s)	1027
BfuAI	ACCTGC	2 cut(s)	475, 522
BisI	GCNGC	2 cut(s)	230, 558
BlsI	GCNGC	2 cut(s)	231, 559
Bme1390I	CCNGG	1 cut(s)	1016
Bme18I	GGWCC	1 cut(s)	511
BmeRI	GACNNNNNGTC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	511, 978
BmiI	GGNNCC	2 cut(s)	487, 613
BmrFI	CCNGG	1 cut(s)	1016
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	8 cut(s)	483, 526, 608, 841, 937, 959, 1041, 1093
BmuI	ACTGGG	1 cut(s)	29
BpiI	GAAGAC	2 cut(s)	97, 179
BpmI	CTGGAG	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	663
BsaXI	ACNNNNNCTCC	5 cut(s)	29, 47, 77, 141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	4 cut(s)	10, 35, 66, 265
BseAI	TCCGGA	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	1016
BseGI	GGATG	4 cut(s)	451, 455, 588, 599
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	1 cut(s)	651
BseNI	ACTGG	4 cut(s)	10, 35, 66, 265
BseRI	GAGGAG	3 cut(s)	7, 10, 811
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	980
BsiHKAI	GWGCWC	1 cut(s)	743
BsiSI	CCGG	1 cut(s)	664
BslFI	GGGAC	1 cut(s)	685
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	2 cut(s)	242, 640
BsmBI	CGTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	685
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	980
Bsp1286I	GDGCHC	2 cut(s)	550, 743
Bsp13I	TCCGGA	1 cut(s)	663
Bsp1407I	TGTACA	2 cut(s)	498, 585
Bsp143I	GATC	4 cut(s)	485, 806, 824, 859
BspACI	CCGC	2 cut(s)	230, 1005
BspANI	GGCC	1 cut(s)	980
BspCNI	CTCAG	1 cut(s)	650
BspEI	TCCGGA	1 cut(s)	663
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	487, 613
BspMI	ACCTGC	2 cut(s)	475, 522
BspPI	GGATC	4 cut(s)	480, 493, 832, 854
BspQI	GCTCTTC	1 cut(s)	207
BspTI	CTTAAG	1 cut(s)	1027
BsrGI	TGTACA	2 cut(s)	498, 585
BsrI	ACTGG	4 cut(s)	10, 35, 66, 265
BssMI	GATC	4 cut(s)	485, 806, 824, 859
BssSI	CACGAG	1 cut(s)	734
Bst2BI	CACGAG	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	1016
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	2 cut(s)	28, 207
BstAFI	CTTAAG	1 cut(s)	1027
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstAUI	TGTACA	2 cut(s)	498, 585
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	1 cut(s)	637
BstEII	GGTNACC	1 cut(s)	788
BstF5I	GGATG	4 cut(s)	451, 455, 588, 599
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	4 cut(s)	47, 234, 428, 709
BstKTI	GATC	4 cut(s)	488, 809, 827, 862
BstMAI	GTCTC	2 cut(s)	242, 640
BstMBI	GATC	4 cut(s)	485, 806, 824, 859
BstMWI	GCNNNNNNNGC	8 cut(s)	129, 149, 467, 545, 554, 563, 715, 977
BstNI	CCWGG	1 cut(s)	1016
BstNSI	RCATGY	1 cut(s)	975
BstPI	GGTNACC	1 cut(s)	788
BstSCI	CCNGG	1 cut(s)	1014
BstSFI	CTRYAG	2 cut(s)	897, 1000
BstSLI	GKGCMC	1 cut(s)	743
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	544
BstV2I	GAAGAC	2 cut(s)	97, 179
BstX2I	RGATCY	2 cut(s)	485, 859
BstYI	RGATCY	2 cut(s)	485, 859
BsuRI	GGCC	1 cut(s)	980
BtsCI	GGATG	4 cut(s)	451, 455, 588, 599
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	1 cut(s)	924
BveI	ACCTGC	2 cut(s)	475, 522
Cac8I	GCNNGC	1 cut(s)	472
CaiI	CAGNNNCTG	2 cut(s)	129, 758
CfoI	GCGC	4 cut(s)	47, 234, 428, 709
Cfr13I	GGNCC	2 cut(s)	511, 978
Csp6I	GTAC	5 cut(s)	499, 586, 878, 1009, 1021
CviAII	CATG	3 cut(s)	92, 764, 972
CviQI	GTAC	5 cut(s)	499, 586, 878, 1009, 1021
DdeI	CTNAG	1 cut(s)	637
DpnI	GATC	4 cut(s)	487, 808, 826, 861
DpnII	GATC	4 cut(s)	485, 806, 824, 859
DraI	TTTAAA	1 cut(s)	414
DriI	GACNNNNNGTC	1 cut(s)	332
Eam1104I	CTCTTC	2 cut(s)	28, 207
Eam1105I	GACNNNNNGTC	1 cut(s)	332
EarI	CTCTTC	2 cut(s)	28, 207
Eco24I	GRGCYC	1 cut(s)	550
Eco32I	GATATC	1 cut(s)	964
Eco47I	GGWCC	1 cut(s)	511
Eco57I	CTGAAG	2 cut(s)	82, 942
Eco91I	GGTNACC	1 cut(s)	788
EcoO65I	GGTNACC	1 cut(s)	788
EcoRII	CCWGG	1 cut(s)	1014
EcoRV	GATATC	1 cut(s)	964
EcoT22I	ATGCAT	1 cut(s)	952
EcoT38I	GRGCYC	1 cut(s)	550
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	3 cut(s)	95, 767, 975
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	3 cut(s)	91, 763, 971
FauI	CCCGC	1 cut(s)	998
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	230, 558
FokI	GGATG	4 cut(s)	458, 462, 586, 595
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	2 cut(s)	230, 558
FspBI	CTAG	3 cut(s)	183, 632, 857
FspI	TGCGCA	1 cut(s)	427
GlaI	GCGC	4 cut(s)	46, 233, 427, 708
GluI	GCNGC	2 cut(s)	230, 558
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	980
HapII	CCGG	1 cut(s)	664
HhaI	GCGC	4 cut(s)	47, 234, 428, 709
Hin1II	CATG	3 cut(s)	95, 767, 975
Hin6I	GCGC	4 cut(s)	45, 232, 426, 707
HinP1I	GCGC	4 cut(s)	45, 232, 426, 707
HinfI	GANTC	7 cut(s)	62, 102, 110, 126, 624, 839, 922
HpaII	CCGG	1 cut(s)	664
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	741
Hpy188I	TCNGA	5 cut(s)	101, 604, 623, 640, 961
Hpy188III	TCNNGA	3 cut(s)	664, 810, 872
Hpy8I	GTNNAC	1 cut(s)	741
HpyAV	CCTTC	2 cut(s)	61, 931
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	9 cut(s)	380, 517, 560, 566, 741, 854, 893, 917, 950
HpyF10VI	GCNNNNNNNGC	8 cut(s)	129, 149, 467, 545, 554, 563, 715, 977
HpyF3I	CTNAG	1 cut(s)	637
Hsp92II	CATG	3 cut(s)	95, 767, 975
HspAI	GCGC	4 cut(s)	45, 232, 426, 707
Kpn2I	TCCGGA	1 cut(s)	663
Kzo9I	GATC	4 cut(s)	485, 806, 824, 859
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	4 cut(s)	149, 203, 798, 1066
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	8 cut(s)	483, 526, 608, 841, 937, 959, 1041, 1093
MaeI	CTAG	3 cut(s)	183, 632, 857
MaeIII	GTNAC	2 cut(s)	788, 844
MalI	GATC	4 cut(s)	487, 808, 826, 861
MboI	GATC	4 cut(s)	485, 806, 824, 859
MboII	GAAGA	6 cut(s)	15, 18, 97, 179, 224, 564
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	2 cut(s)	485, 859
MhlI	GDGCHC	2 cut(s)	550, 743
MluCI	AATT	6 cut(s)	278, 283, 409, 561, 828, 1073
MlyI	GAGTC	5 cut(s)	56, 111, 120, 633, 833
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	6 cut(s)	25, 28, 31, 50, 662, 789
Mph1103I	ATGCAT	1 cut(s)	952
MroI	TCCGGA	1 cut(s)	663
MseI	TTAA	5 cut(s)	290, 413, 906, 1028, 1077
MspA1I	CMGCKG	1 cut(s)	1005
MspCI	CTTAAG	1 cut(s)	1027
MspI	CCGG	1 cut(s)	664
MspR9I	CCNGG	1 cut(s)	1016
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	1016
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	8 cut(s)	129, 149, 467, 545, 554, 563, 715, 977
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	4 cut(s)	485, 806, 824, 859
NlaIII	CATG	3 cut(s)	95, 767, 975
NlaIV	GGNNCC	2 cut(s)	487, 613
NsbI	TGCGCA	1 cut(s)	427
NsiI	ATGCAT	1 cut(s)	952
NspI	RCATGY	1 cut(s)	975
PciSI	GCTCTTC	1 cut(s)	207
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	110, 922
PfoI	TCCNGGA	1 cut(s)	1014
PkrI	GCNGC	2 cut(s)	231, 559
PleI	GAGTC	5 cut(s)	56, 110, 120, 632, 833
PpsI	GAGTC	5 cut(s)	56, 110, 120, 632, 833
Psp6I	CCWGG	1 cut(s)	1014
PspEI	GGTNACC	1 cut(s)	788
PspGI	CCWGG	1 cut(s)	1014
PspN4I	GGNNCC	2 cut(s)	487, 613
PspPI	GGNCC	2 cut(s)	511, 978
PstNI	CAGNNNCTG	2 cut(s)	129, 758
PsuI	RGATCY	2 cut(s)	485, 859
RsaI	GTAC	5 cut(s)	500, 587, 879, 1010, 1022
RsaNI	GTAC	5 cut(s)	499, 586, 878, 1009, 1021
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	5 cut(s)	290, 413, 906, 1028, 1077
SatI	GCNGC	2 cut(s)	230, 558
Sau3AI	GATC	4 cut(s)	485, 806, 824, 859
Sau96I	GGNCC	2 cut(s)	511, 978
SchI	GAGTC	5 cut(s)	56, 111, 120, 633, 833
ScrFI	CCNGG	1 cut(s)	1016
SduI	GDGCHC	2 cut(s)	550, 743
SfaNI	GCATC	8 cut(s)	483, 526, 608, 841, 937, 959, 1041, 1093
SfcI	CTRYAG	2 cut(s)	897, 1000
SinI	GGWCC	1 cut(s)	511
SmlI	CTYRAG	1 cut(s)	1027
SmoI	CTYRAG	1 cut(s)	1027
Sse9I	AATT	6 cut(s)	278, 283, 409, 561, 828, 1073
SsiI	CCGC	2 cut(s)	230, 1005
SspMI	CTAG	3 cut(s)	183, 632, 857
StyD4I	CCNGG	1 cut(s)	1014
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	1 cut(s)	108
TasI	AATT	6 cut(s)	278, 283, 409, 561, 828, 1073
TatI	WGTACW	4 cut(s)	498, 585, 877, 1020
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	2 cut(s)	110, 922
Tru1I	TTAA	5 cut(s)	290, 413, 906, 1028, 1077
Tru9I	TTAA	5 cut(s)	290, 413, 906, 1028, 1077
TscAI	CASTG	1 cut(s)	924
TseI	GCWGC	1 cut(s)	557
TspDTI	ATGAA	5 cut(s)	150, 329, 738, 752, 872
TspGWI	ACGGA	2 cut(s)	263, 478
TspRI	CASTG	1 cut(s)	924
Vha464I	CTTAAG	1 cut(s)	1027
VneI	GTGCAC	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	3 cut(s)	283, 409, 1073
XceI	RCATGY	1 cut(s)	975
XspI	CTAG	3 cut(s)	183, 632, 857
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.