Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007350

Physical Location & Seq

Genomic Coordinates Reverse (-)

28226756 .. 28231783

Gene Structure 5028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG130200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCAAATCAGTCCTCCTCTTCTTCCTACCCGATCCTCTGCGCTTCCTTCAACCAAGACTCCAGTTGCTTTGCCATAGGCACAAAGTATGGCTTCAAAGTATTCGATTCTAATACAGGCAGACTCTGCTATGAAGGAGTTATTGGCGCTTTCGCTATTGTTGAAATGCTATTTAGCTCTAGTCTTCTTGCCATTGTTGGAGCTGGTGAAGAGCCATCTCTATCCCCGCGTCGTCTCTGTTTGTTCAATACAACCAGTGGAACTGCTCTTCGAGAATTGAACTTTTTGACTTCAATACTTGCCGTTCATATGAATAGGAAAAGACTTGTTGTCATCTTACAGGACAAAACATATGTATATGACATAAATAGTCTTGCAATCTTGGACACTATTGATACTGTATCAAATATAAAAGGGCTTTGCGCATTCTCCCCGAGTTTGGATGGTTGTTACTTGGCTCTTCCTGCCAGCATCTCCAAAGGATCAGTGTTGTTATACAATGTCATGGACCTGCATTTACATTGTGAGATTGATGCTCATAGAGCCCCACTTGCTGCAATTGCACTTTCTTCCAATGGGACGTACATAGCAACAGCATCCGAACAGGGAACCATTATCAGAGTCCATCTAGTATCAGAAGCAACAAAGTCTTATAGCTTTCGGAGAGGAACCTATCCATCTACTATATTCTCCTTATCATTTGCGCCATCTATGCAACTGCCGGATATTCTCGTGGGCACAAGTTCATCTGGTTCTGTTCATGCTTTCTCTCTGGGGTTTTCTAATTACCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

28.53

Weight (kDa)

6.98

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	13 - 259	2e-42	PROPPIN
WD40_Prp19	PF24814	100 - 205	8.6e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	115 - 238	9.2e-06	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	123 - 237	2.3e-06	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30510 AT4G30510
fragaria_vesca	FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740
malus_domestica	MD16G1259300.v1.1
prunus_persica	Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1
pyrus_communis	pycom16g22700
rosa_chinensis	RchiOBHm_Chr4g0405281
rosa_laevigata	RLG00000008860
rosa_multiflora	Rmu_sc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_5G00349620
rosa_rugosa	Rorug04G0056300 Rorug04G0056400 Rorug04G0056500
rosa_samantha	Rh4AG130200 Rh4BG124600 Rh4DG123800
rosa_wichuraiana	Rw4G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	519
AccII	CGCG	1 cut(s)	229
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	28, 490
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	6 cut(s)	52, 97, 164, 247, 280, 294
AhdI	GACNNNNNGTC	1 cut(s)	329
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	3 cut(s)	177, 203, 657
AluI	AGCT	3 cut(s)	177, 203, 657
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	28, 490
AlwNI	CAGNNNCTG	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	433
ApeKI	GCWGC	1 cut(s)	554
AspLEI	GCGC	4 cut(s)	44, 149, 425, 706
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	547
BauI	CACGAG	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	5 cut(s)	223, 437, 633, 685, 715
BceAI	ACGGC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	180, 629
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	519
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme18I	GGWCC	1 cut(s)	508
BmeRI	GACNNNNNGTC	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	2 cut(s)	610, 670
BmsI	GCATC	3 cut(s)	480, 523, 605
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	63, 255
BseGI	GGATG	2 cut(s)	448, 596
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseNI	ACTGG	2 cut(s)	63, 255
BseRI	GAGGAG	1 cut(s)	7
BseSI	GKGCMC	1 cut(s)	740
BseXI	GCAGC	1 cut(s)	541
Bsh1236I	CGCG	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	425
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	547, 740
Bsp143I	GATC	2 cut(s)	33, 482
BspACI	CCGC	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	610, 670
BspMI	ACCTGC	1 cut(s)	519
BspPI	GGATC	2 cut(s)	28, 490
BspQI	GCTCTTC	3 cut(s)	204, 273, 465
BsrI	ACTGG	2 cut(s)	63, 255
BssMI	GATC	2 cut(s)	33, 482
BssSI	CACGAG	1 cut(s)	731
Bst2BI	CACGAG	1 cut(s)	731
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	4 cut(s)	25, 204, 273, 465
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	469
BstF5I	GGATG	2 cut(s)	448, 596
BstFNI	CGCG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	4 cut(s)	44, 149, 425, 706
BstKTI	GATC	2 cut(s)	36, 485
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	33, 482
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 464, 542, 551, 560, 712
BstSLI	GKGCMC	1 cut(s)	740
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	176
BtsCI	GGATG	2 cut(s)	448, 596
BtsIMutI	CAGTG	2 cut(s)	262, 492
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	469
CaiI	CAGNNNCTG	1 cut(s)	126
CfoI	GCGC	4 cut(s)	44, 149, 425, 706
Cfr13I	GGNCC	1 cut(s)	508
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	2 cut(s)	505, 761
CviJI	RGCY	8 cut(s)	93, 177, 203, 214, 418, 458, 545, 657
CviKI_1	RGCY	8 cut(s)	93, 177, 203, 214, 418, 458, 545, 657
CviQI	GTAC	1 cut(s)	583
DpnI	GATC	2 cut(s)	35, 484
DpnII	GATC	2 cut(s)	33, 482
DriI	GACNNNNNGTC	1 cut(s)	329
Eam1104I	CTCTTC	4 cut(s)	25, 204, 273, 465
Eam1105I	GACNNNNNGTC	1 cut(s)	329
EarI	CTCTTC	4 cut(s)	25, 204, 273, 465
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	508
Eco88I	CYCGRG	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	547
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	2 cut(s)	508, 764
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	2 cut(s)	504, 760
FauI	CCCGC	1 cut(s)	234
FauNDI	CATATG	2 cut(s)	309, 352
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	2 cut(s)	455, 583
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	2 cut(s)	180, 629
FspI	TGCGCA	1 cut(s)	424
GlaI	GCGC	4 cut(s)	43, 148, 424, 705
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	150
HapII	CCGG	1 cut(s)	722
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	4 cut(s)	44, 149, 425, 706
Hin1II	CATG	2 cut(s)	508, 764
Hin6I	GCGC	4 cut(s)	42, 147, 423, 704
HinP1I	GCGC	4 cut(s)	42, 147, 423, 704
HinfI	GANTC	4 cut(s)	59, 107, 123, 621
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	4 cut(s)	601, 620, 637, 663
Hpy188III	TCNNGA	1 cut(s)	272
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	2 cut(s)	58, 128
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	5 cut(s)	377, 514, 557, 563, 715
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 464, 542, 551, 560, 712
HpySE526I	ACGT	1 cut(s)	581
Hsp92II	CATG	2 cut(s)	508, 764
HspAI	GCGC	4 cut(s)	42, 147, 423, 704
Kzo9I	GATC	2 cut(s)	33, 482
LguI	GCTCTTC	3 cut(s)	204, 273, 465
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	3 cut(s)	480, 523, 605
MaeI	CTAG	2 cut(s)	180, 629
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	2 cut(s)	35, 484
MboI	GATC	2 cut(s)	33, 482
MboII	GAAGA	7 cut(s)	12, 15, 176, 221, 260, 452, 561
MfeI	CAATTG	1 cut(s)	558
MhlI	GDGCHC	2 cut(s)	547, 740
MluCI	AATT	3 cut(s)	275, 558, 784
MlyI	GAGTC	3 cut(s)	53, 117, 630
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	25, 28, 47, 659, 786
MspI	CCGG	1 cut(s)	722
MunI	CAATTG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	425
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	6 cut(s)	126, 464, 542, 551, 560, 712
NdeI	CATATG	2 cut(s)	309, 352
NdeII	GATC	2 cut(s)	33, 482
NlaIII	CATG	2 cut(s)	508, 764
NlaIV	GGNNCC	2 cut(s)	610, 670
NsbI	TGCGCA	1 cut(s)	424
PciSI	GCTCTTC	3 cut(s)	204, 273, 465
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	3 cut(s)	53, 117, 629
PpsI	GAGTC	3 cut(s)	53, 117, 629
PspN4I	GGNNCC	2 cut(s)	610, 670
PspPI	GGNCC	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	126
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
SapI	GCTCTTC	3 cut(s)	204, 273, 465
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	2 cut(s)	33, 482
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	3 cut(s)	53, 117, 630
SduI	GDGCHC	2 cut(s)	547, 740
SetI	ASST	7 cut(s)	179, 205, 513, 584, 659, 674, 797
SfaNI	GCATC	3 cut(s)	480, 523, 605
SinI	GGWCC	1 cut(s)	508
Sse9I	AATT	3 cut(s)	275, 558, 784
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	180, 629
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	2 cut(s)	105, 271
TasI	AATT	3 cut(s)	275, 558, 784
TfiI	GAWTC	1 cut(s)	107
TscAI	CASTG	2 cut(s)	262, 492
TseI	GCWGC	1 cut(s)	554
TspDTI	ATGAA	5 cut(s)	147, 296, 326, 735, 749
TspRI	CASTG	2 cut(s)	262, 492
VpaK11BI	GGWCC	1 cut(s)	508
XspI	CTAG	2 cut(s)	180, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.