Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007350

Physical Location & Seq

Genomic Coordinates Forward (+)

8853622 .. 8854062

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0056300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGATGCGGCGTATCGTTTTTGTGCTTGCTCTTGTTGCTTTATTAGCATCAGCAGCTTGTGCACGTATGGTGCCTGGTGATCAACCCGCTACTAGCCCTAATGAGAAAACAGCCGTTTTGGATGCTACTGCACCTAAGGCAGCTGCCCCGACTGGCGTTAAAGACAAGAAGTGCATCGGTGCTGTTGGTGGATTCGCTGGAATGGGAGGCGTAGCTGGAGTCGGCGGTGTGATGCCTCTTCTTGGTGGTGGGATCGGAAAATTTGGTGGAATAGGTGGAGTTGGAGGTCTTGGCGGAGTCGGTGGAGTAGGCGGTATTGGCGGAGCTGGCGGTGGAGTTGGTGGCCTAGGCGGTGGAGCTGGTGGTGTTGGCGGTGTCGGGGGAGCTGCTGGTGGAGGAGCCGGCGGAATTGGGGGAATTGGTGGCCTTCACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

12.77

Weight (kDa)

9.51

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30510 AT4G30510
fragaria_vesca	FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740
malus_domestica	MD16G1259300.v1.1
prunus_persica	Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1
pyrus_communis	pycom16g22700
rosa_chinensis	RchiOBHm_Chr4g0405281
rosa_laevigata	RLG00000008860
rosa_multiflora	Rmu_sc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_5G00349620
rosa_rugosa	Rorug04G0056300 Rorug04G0056400 Rorug04G0056500
rosa_samantha	Rh4AG130200 Rh4BG124600 Rh4DG123800
rosa_wichuraiana	Rw4G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	6 cut(s)	59, 146, 218, 329, 362, 389
AluI	AGCT	6 cut(s)	59, 146, 218, 329, 362, 389
Alw21I	GWGCWC	1 cut(s)	67
Alw44I	GTGCAC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	2 cut(s)	346, 427
ApaLI	GTGCAC	1 cut(s)	63
ApeKI	GCWGC	4 cut(s)	56, 143, 146, 389
ApoI	RAATTY	1 cut(s)	263
AspA2I	CCTAGG	1 cut(s)	349
AsuHPI	GGTGA	2 cut(s)	92, 425
AvrII	CCTAGG	1 cut(s)	349
AxyI	CCTNAGG	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	68, 133, 155, 376
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	82
BfaI	CTAG	2 cut(s)	96, 350
BisI	GCNGC	5 cut(s)	11, 57, 144, 147, 390
BlnI	CCTAGG	1 cut(s)	349
BlsI	GCNGC	5 cut(s)	12, 58, 145, 148, 391
Bme1390I	CCNGG	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	75, 403
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	4 cut(s)	59, 115, 186, 225
BpmI	CTGGAG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	160
Bse21I	CCTNAGG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	4 cut(s)	68, 133, 155, 376
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	348, 429
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	405
BslI	CCNNNNNNNGG	1 cut(s)	245
BsnI	GGCC	2 cut(s)	348, 429
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	82, 255
BspANI	GGCC	2 cut(s)	348, 429
BspLI	GGNNCC	2 cut(s)	75, 403
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	2 cut(s)	82, 255
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	3 cut(s)	30, 331, 406
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	2 cut(s)	85, 258
BstMBI	GATC	2 cut(s)	82, 255
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 47, 56, 62, 140, 321, 330
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	68, 133, 155, 376
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	348, 429
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	3 cut(s)	30, 331, 406
Cfr10I	RCCGGY	1 cut(s)	404
CviAII	CATG	1 cut(s)	438
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	84, 257
DpnII	GATC	2 cut(s)	82, 255
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EciI	GGCGGA	3 cut(s)	312, 339, 423
Eco130I	CCWWGG	1 cut(s)	349
Eco81I	CCTNAGG	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	1 cut(s)	441
FaiI	YATR	2 cut(s)	71, 439
FatI	CATG	1 cut(s)	437
FauI	CCCGC	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	5 cut(s)	11, 57, 144, 147, 390
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	5 cut(s)	11, 57, 144, 147, 390
FspBI	CTAG	2 cut(s)	96, 350
GluI	GCNGC	5 cut(s)	11, 57, 144, 147, 390
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	348, 429
HapII	CCGG	1 cut(s)	405
Hin1II	CATG	1 cut(s)	441
HinfI	GANTC	3 cut(s)	195, 222, 300
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	2 cut(s)	92, 425
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	440
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	65, 134, 177
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 47, 56, 62, 140, 321, 330
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	441
KroI	GCCGGC	1 cut(s)	404
KroNI	GCCGGC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	82, 255
LmnI	GCTCC	4 cut(s)	326, 359, 386, 401
LpnPI	CCDG	9 cut(s)	63, 90, 141, 186, 204, 315, 348, 378, 418
Lsp1109I	GCAGC	4 cut(s)	68, 133, 155, 376
LweI	GCATC	4 cut(s)	59, 115, 186, 225
MaeI	CTAG	2 cut(s)	96, 350
MaeII	ACGT	1 cut(s)	67
MalI	GATC	2 cut(s)	84, 257
MboI	GATC	2 cut(s)	82, 255
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	3 cut(s)	263, 411, 420
MlyI	GAGTC	2 cut(s)	231, 309
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	203, 249, 281, 392
MroNI	GCCGGC	1 cut(s)	404
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	7 cut(s)	38, 47, 56, 62, 140, 321, 330
NaeI	GCCGGC	1 cut(s)	406
NdeII	GATC	2 cut(s)	82, 255
NgoMIV	GCCGGC	1 cut(s)	404
NlaIII	CATG	1 cut(s)	441
NlaIV	GGNNCC	2 cut(s)	75, 403
PdiI	GCCGGC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	5 cut(s)	12, 58, 145, 148, 391
PleI	GAGTC	2 cut(s)	230, 308
PpsI	GAGTC	2 cut(s)	230, 308
Ppu21I	YACGTR	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	75, 403
PvuII	CAGCTG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	5 cut(s)	11, 57, 144, 147, 390
Sau3AI	GATC	2 cut(s)	82, 255
SchI	GAGTC	2 cut(s)	231, 309
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	4 cut(s)	59, 115, 186, 225
Sse9I	AATT	3 cut(s)	263, 411, 420
SspMI	CTAG	2 cut(s)	96, 350
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	349
TaiI	ACGT	1 cut(s)	70
TasI	AATT	3 cut(s)	263, 411, 420
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	4 cut(s)	56, 143, 146, 389
VneI	GTGCAC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	263
XmaJI	CCTAGG	1 cut(s)	349
XspI	CTAG	2 cut(s)	96, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.