Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007350

Physical Location & Seq

Genomic Coordinates Forward (+)

31608132 .. 31614351

Gene Structure 6220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1259300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCCTCTCCTTACCCAATTTATTGCGCTTCCTTCAACCAAGACACCAGTTGCTTTGCAATCGGCACAAGGGGCGGCTTCAAAATATTCGATTCCAGTACTGGCAGACTCTGCTATGAGCGAGCTATTGGAGCTTTCGTTATAGTAGAAATGCTTTTTAGCTCTAGTCTTCTTGCCATTGTTGGAGCTGGTGAAGAGCCATCCCTATCGCCCCGCCGCCTCTGTTTGTTCAATACCACAACTGCAACTGCTCTTCGAGAATTAAATTTCTTAACTTCCATACTTGCTGTTCGCATGAATAAGAAGAGACTTGTTGTCATTTTACAGGACAAAACATACGTATATGACATAAATAGTCTCGCAATCTTGGACACTATTGATACTATACCAAATATAAAAGGGCTTTGTGCATTCTCACCAAGTTTGGAAGGGTGCTTTTTGGCTCTTCCTGCTAGCATCTCGAAGGGATCTGTGTTGTTGTACAATGTCATGGACCGGCATTTACATTGTGAGATAGATGCGCATCGATCCCCACTTGCTGCAATTGCCCTTTCTTCCAATGGAATCTACATAGCAACAGCATCTGAACAGGGAACCATTATCAGAGTCCATCTAGTCTCAGAAGCAACTAAGTCGTATAGCTTTCGAAGAGGGACATATCCATCAACTATATTTTCTTTGTCATTTGGGCCATCTATGCAACTGCCAGATATTCTTGTGGGAACAAGTTCTTCAGGTTCTGTTCATGCCTTTTCTCTGGGGTTCTCCATTTATCAAAGCAAAAGATCAGGGAGTTTTCTTGGATCAATTATACCCGACTCTGTGACTGATGCATTAGATCCGGCACATCATGATGTACTTCATAATGCTGCACCGGCAGGAGTCAAAAGCTATGCAGTGATACGAAAGGTAGATAAGGTTGCTGATACATCAACTTCAGAAATTGTGGCTTGTAGGGCAACTATTTCCATCATAAGCTACAATGGGTACTTCCAGGAGTACAACTTAAGTGTCAACAGTCAGAATGAGTTCGTGTGGAGCTTGGAGCGCGAGTTCAAGCTACTTGCTGTCATCACAGATGATTCCACCAGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

39.57

Weight (kDa)

6.45

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	8 - 254	2.7e-40	PROPPIN
WD40_Prp19	PF24814	100 - 200	5.9e-06	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30510 AT4G30510
fragaria_vesca	FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740
malus_domestica	MD16G1259300.v1.1
prunus_persica	Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1
pyrus_communis	pycom16g22700
rosa_chinensis	RchiOBHm_Chr4g0405281
rosa_laevigata	RLG00000008860
rosa_multiflora	Rmu_sc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_5G00349620
rosa_rugosa	Rorug04G0056300 Rorug04G0056400 Rorug04G0056500
rosa_samantha	Rh4AG130200 Rh4BG124600 Rh4DG123800
rosa_wichuraiana	Rw4G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	522
AccII	CGCG	1 cut(s)	1050
AciI	CCGC	3 cut(s)	75, 214, 217
AclWI	GGATC	4 cut(s)	475, 522, 811, 833
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	2 cut(s)	717, 921
AfaI	GTAC	5 cut(s)	100, 482, 858, 989, 1001
AflII	CTTAAG	1 cut(s)	1006
AgsI	TTSAA	4 cut(s)	37, 82, 232, 1057
AhdI	GACNNNNNGTC	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	993
AloI	GAACNNNNNNTCC	2 cut(s)	1037, 1069
Alw26I	GTCTC	3 cut(s)	301, 362, 622
AlwI	GGATC	4 cut(s)	475, 522, 811, 833
AlwNI	CAGNNNCTG	3 cut(s)	111, 584, 740
AoxI	GGCC	2 cut(s)	3, 689
ApeKI	GCWGC	2 cut(s)	539, 869
ApoI	RAATTY	1 cut(s)	265
Asp700I	GAANNNNTTC	2 cut(s)	727, 1028
AspLEI	GCGC	3 cut(s)	29, 523, 1050
AspS9I	GGNCC	2 cut(s)	493, 689
AsuHPI	GGTGA	2 cut(s)	203, 408
AsuII	TTCGAA	1 cut(s)	646
AsuNHI	GCTAGC	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	526, 856
BccI	CCATC	5 cut(s)	208, 618, 670, 700, 977
BcgI	CGANNNNNNTGC	2 cut(s)	615, 649
BciT130I	CCWGG	1 cut(s)	995
BcoDI	GTCTC	3 cut(s)	301, 362, 622
BfaI	CTAG	3 cut(s)	165, 453, 614
BfrI	CTTAAG	1 cut(s)	1006
BisI	GCNGC	4 cut(s)	76, 217, 540, 870
BlsI	GCNGC	4 cut(s)	77, 218, 541, 871
BmcAI	AGTACT	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	995
Bme18I	GGWCC	1 cut(s)	493
BmeRI	GACNNNNNGTC	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	493, 689
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	1 cut(s)	995
BmsI	GCATC	5 cut(s)	465, 508, 532, 590, 820
BmtI	GCTAGC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	646
Bsa29I	ATCGAT	1 cut(s)	526
BsaAI	YACGTR	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	522
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 1037, 1067
Bse118I	RCCGGY	2 cut(s)	495, 874
Bse1I	ACTGG	3 cut(s)	48, 96, 106
Bse8I	GATNNNNATC	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	995
BseCI	ATCGAT	1 cut(s)	526
BseGI	GGATG	1 cut(s)	200
BseJI	GATNNNNATC	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	3 cut(s)	48, 96, 106
BseXI	GCAGC	2 cut(s)	526, 856
BsgI	GTGCAG	1 cut(s)	855
Bsh1236I	CGCG	1 cut(s)	1050
BshFI	GGCC	2 cut(s)	5, 691
BshVI	ATCGAT	1 cut(s)	526
BsiSI	CCGG	3 cut(s)	496, 842, 875
BslFI	GGGAC	1 cut(s)	667
BsmAI	GTCTC	3 cut(s)	301, 362, 622
BsmFI	GGGAC	1 cut(s)	667
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	5, 691
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	5 cut(s)	467, 527, 785, 803, 838
BspACI	CCGC	3 cut(s)	75, 214, 217
BspANI	GGCC	2 cut(s)	5, 691
BspCNI	CTCAG	1 cut(s)	632
BspDI	ATCGAT	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	1050
BspHI	TCATGA	2 cut(s)	850, 1094
BspLI	GGNNCC	1 cut(s)	595
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	4 cut(s)	475, 522, 811, 833
BspQI	GCTCTTC	3 cut(s)	189, 258, 450
BspT104I	TTCGAA	1 cut(s)	646
BspTI	CTTAAG	1 cut(s)	1006
BsrFI	RCCGGY	2 cut(s)	495, 874
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	3 cut(s)	48, 96, 106
BssAI	RCCGGY	2 cut(s)	495, 874
BssMI	GATC	5 cut(s)	467, 527, 785, 803, 838
Bst2UI	CCWGG	1 cut(s)	995
Bst4CI	ACNGT	1 cut(s)	1019
Bst6I	CTCTTC	5 cut(s)	189, 258, 299, 450, 643
BstAFI	CTTAAG	1 cut(s)	1006
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstAUI	TGTACA	1 cut(s)	480
BstBAI	YACGTR	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	646
BstC8I	GCNNGC	2 cut(s)	123, 454
BstDEI	CTNAG	2 cut(s)	619, 630
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	1050
BstHHI	GCGC	3 cut(s)	29, 523, 1050
BstKTI	GATC	5 cut(s)	470, 530, 788, 806, 841
BstMAI	GTCTC	3 cut(s)	301, 362, 622
BstMBI	GATC	5 cut(s)	467, 527, 785, 803, 838
BstMWI	GCNNNNNNNGC	9 cut(s)	72, 111, 131, 449, 545, 697, 875, 956, 1047
BstNI	CCWGG	1 cut(s)	995
BstSCI	CCNGG	1 cut(s)	993
BstSNI	TACGTA	1 cut(s)	340
BstUI	CGCG	1 cut(s)	1050
BstV1I	GCAGC	2 cut(s)	526, 856
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	467, 838
BstYI	RGATCY	2 cut(s)	467, 838
Bsu15I	ATCGAT	1 cut(s)	526
BsuRI	GGCC	2 cut(s)	5, 691
BsuTUI	ATCGAT	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	200
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	1 cut(s)	903
Cac8I	GCNNGC	2 cut(s)	123, 454
CaiI	CAGNNNCTG	3 cut(s)	111, 584, 740
CciI	TCATGA	2 cut(s)	850, 1094
CfoI	GCGC	3 cut(s)	29, 523, 1050
Cfr10I	RCCGGY	2 cut(s)	495, 874
Cfr13I	GGNCC	2 cut(s)	493, 689
ClaI	ATCGAT	1 cut(s)	526
Csp6I	GTAC	5 cut(s)	99, 481, 857, 988, 1000
CviAII	CATG	5 cut(s)	295, 490, 746, 851, 1095
CviQI	GTAC	5 cut(s)	99, 481, 857, 988, 1000
DdeI	CTNAG	2 cut(s)	619, 630
DpnI	GATC	5 cut(s)	469, 529, 787, 805, 840
DpnII	GATC	5 cut(s)	467, 527, 785, 803, 838
DriI	GACNNNNNGTC	1 cut(s)	314
Eam1104I	CTCTTC	5 cut(s)	189, 258, 299, 450, 643
Eam1105I	GACNNNNNGTC	1 cut(s)	314
EarI	CTCTTC	5 cut(s)	189, 258, 299, 450, 643
Eco105I	TACGTA	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	493
Eco57I	CTGAAG	2 cut(s)	717, 921
EcoRII	CCWGG	1 cut(s)	993
EcoT22I	ATGCAT	1 cut(s)	835
FaeI	CATG	5 cut(s)	298, 493, 749, 854, 1098
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	5 cut(s)	294, 489, 745, 850, 1094
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	4 cut(s)	76, 217, 540, 870
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	4 cut(s)	76, 217, 540, 870
FspAI	RTGCGCAY	1 cut(s)	522
FspBI	CTAG	3 cut(s)	165, 453, 614
FspI	TGCGCA	1 cut(s)	522
GlaI	GCGC	3 cut(s)	28, 522, 1049
GluI	GCNGC	4 cut(s)	76, 217, 540, 870
HaeIII	GGCC	2 cut(s)	5, 691
HapII	CCGG	3 cut(s)	496, 842, 875
HhaI	GCGC	3 cut(s)	29, 523, 1050
Hin1II	CATG	5 cut(s)	298, 493, 749, 854, 1098
Hin6I	GCGC	3 cut(s)	27, 521, 1048
HinP1I	GCGC	3 cut(s)	27, 521, 1048
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HinfI	GANTC	7 cut(s)	92, 108, 564, 606, 818, 882, 1082
HpaII	CCGG	3 cut(s)	496, 842, 875
HphI	GGTGA	2 cut(s)	203, 408
Hpy166II	GTNNAC	1 cut(s)	1015
Hpy188I	TCNGA	5 cut(s)	586, 605, 622, 940, 1023
Hpy188III	TCNNGA	4 cut(s)	257, 460, 851, 1095
Hpy8I	GTNNAC	1 cut(s)	1015
HpyAV	CCTTC	3 cut(s)	43, 422, 457
HpyCH4III	ACNGT	1 cut(s)	1019
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	8 cut(s)	59, 245, 410, 542, 700, 833, 872, 896
HpyF10VI	GCNNNNNNNGC	9 cut(s)	72, 111, 131, 449, 545, 697, 875, 956, 1047
HpyF3I	CTNAG	2 cut(s)	619, 630
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	5 cut(s)	298, 493, 749, 854, 1098
HspAI	GCGC	3 cut(s)	27, 521, 1048
Kzo9I	GATC	5 cut(s)	467, 527, 785, 803, 838
LguI	GCTCTTC	3 cut(s)	189, 258, 450
LmnI	GCTCC	4 cut(s)	131, 185, 1038, 1045
Lsp1109I	GCAGC	2 cut(s)	526, 856
LweI	GCATC	5 cut(s)	465, 508, 532, 590, 820
MaeI	CTAG	3 cut(s)	165, 453, 614
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	823
MalI	GATC	5 cut(s)	469, 529, 787, 805, 840
MboI	GATC	5 cut(s)	467, 527, 785, 803, 838
MboII	GAAGA	8 cut(s)	161, 206, 245, 316, 437, 546, 660, 723
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	2 cut(s)	467, 838
MluCI	AATT	6 cut(s)	18, 260, 265, 543, 807, 942
MlyI	GAGTC	4 cut(s)	102, 615, 812, 891
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	3 cut(s)	16, 230, 644
Mph1103I	ATGCAT	1 cut(s)	835
MroXI	GAANNNNTTC	2 cut(s)	727, 1028
MseI	TTAA	3 cut(s)	263, 272, 1007
MslI	CAYNNNNRTG	1 cut(s)	852
MspCI	CTTAAG	1 cut(s)	1006
MspI	CCGG	3 cut(s)	496, 842, 875
MspR9I	CCNGG	1 cut(s)	995
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	995
MvnI	CGCG	1 cut(s)	1050
MwoI	GCNNNNNNNGC	9 cut(s)	72, 111, 131, 449, 545, 697, 875, 956, 1047
NdeII	GATC	5 cut(s)	467, 527, 785, 803, 838
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	5 cut(s)	298, 493, 749, 854, 1098
NlaIV	GGNNCC	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	823
NsbI	TGCGCA	1 cut(s)	522
NsiI	ATGCAT	1 cut(s)	835
NspV	TTCGAA	1 cut(s)	646
PagI	TCATGA	2 cut(s)	850, 1094
PciSI	GCTCTTC	3 cut(s)	189, 258, 450
PctI	GAATGC	1 cut(s)	410
PdmI	GAANNNNTTC	2 cut(s)	727, 1028
PfeI	GAWTC	3 cut(s)	92, 564, 1082
PfoI	TCCNGGA	1 cut(s)	993
PkrI	GCNGC	4 cut(s)	77, 218, 541, 871
PleI	GAGTC	4 cut(s)	102, 614, 812, 890
PpsI	GAGTC	4 cut(s)	102, 614, 812, 890
Ppu21I	YACGTR	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	993
PspGI	CCWGG	1 cut(s)	993
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	2 cut(s)	493, 689
PstNI	CAGNNNCTG	3 cut(s)	111, 584, 740
PsuI	RGATCY	2 cut(s)	467, 838
RsaI	GTAC	5 cut(s)	100, 482, 858, 989, 1001
RsaNI	GTAC	5 cut(s)	99, 481, 857, 988, 1000
RseI	CAYNNNNRTG	1 cut(s)	852
SapI	GCTCTTC	3 cut(s)	189, 258, 450
SaqAI	TTAA	3 cut(s)	263, 272, 1007
SatI	GCNGC	4 cut(s)	76, 217, 540, 870
Sau3AI	GATC	5 cut(s)	467, 527, 785, 803, 838
Sau96I	GGNCC	2 cut(s)	493, 689
ScaI	AGTACT	1 cut(s)	100
SchI	GAGTC	4 cut(s)	102, 615, 812, 891
ScrFI	CCNGG	1 cut(s)	995
SfaNI	GCATC	5 cut(s)	465, 508, 532, 590, 820
SfuI	TTCGAA	1 cut(s)	646
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	1 cut(s)	1006
SmoI	CTYRAG	1 cut(s)	1006
SnaBI	TACGTA	1 cut(s)	340
Sse9I	AATT	6 cut(s)	18, 260, 265, 543, 807, 942
SsiI	CCGC	3 cut(s)	75, 214, 217
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	3 cut(s)	165, 453, 614
StyD4I	CCNGG	1 cut(s)	993
TaaI	ACNGT	1 cut(s)	1019
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	5 cut(s)	90, 256, 461, 526, 646
TasI	AATT	6 cut(s)	18, 260, 265, 543, 807, 942
TatI	WGTACW	4 cut(s)	98, 480, 856, 999
TauI	GCSGC	2 cut(s)	78, 219
TfiI	GAWTC	3 cut(s)	92, 564, 1082
Tru1I	TTAA	3 cut(s)	263, 272, 1007
Tru9I	TTAA	3 cut(s)	263, 272, 1007
TscAI	CASTG	1 cut(s)	903
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	2 cut(s)	539, 869
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	3 cut(s)	311, 734, 851
TspRI	CASTG	1 cut(s)	903
Vha464I	CTTAAG	1 cut(s)	1006
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	265
XmnI	GAANNNNTTC	2 cut(s)	727, 1028
XspI	CTAG	3 cut(s)	165, 453, 614
ZrmI	AGTACT	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.