Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007350

Physical Location & Seq

Genomic Coordinates Reverse (-)

20820847 .. 20826005

Gene Structure 5159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG124600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCAAATCAATCCTCCTCTTCTTCCTACCCAATCCTCTGCGCTTCCTTCAACCAAGACTCCAGTTGCTTTGCCATAGGCACAAAGGATGGCTTCAAAGTATTCGATTCCAATACAGGCAGACTCTGCTATGAACGAGCTATTGGCGCTTTCGCTATTGTTGAAATGCTATTTAGCTCTAGTCTTCTTGCCATTGTTGGAGCTGGTGAAGAGCCATCTCTATCCCCGCGTCGGCTCTGTTTGTTCAATACAACCAGTGGAACTGCTCTTCGAGAACTGAACTTTTTGACTTCAATACTTGCCGTTCGTATGAATAGGAAAAGACTTGTTGTCATCTTACAGGACAAAACATATGTATATGACATAAATAGTCTTGCAATCTTGGACACTATTGATACTGTATCAAATATAAAAGGGCTATGCGCATTCTCCCCGAGTTTGGATGGTTGTTACTTGGCTCTTCCTGCCAGCATCTCCAAAGGATCAGTGTTGTTATACAATGTCATGGACCTGCATTTACATTGTGAGATTGATGCTCATAGAGCCCCACTTGCTGCAATTGCACTTTCTTCCAATGGGACGTACATAGCAACAGCATCCGAACAGGGAACCATTATCAGAGTCCATTTAGTATCAGAAGCAACAAAGTCTTATAGCTTTCGGAGAGGAACATATCCATCTACTATATTCTCCTTATCATTTGCGCCATCTATGCAACTGCCAGATATTCTAGTGGGCACAAGTTCATCTGGTTCTGTTCATGCTTTCTCTCTGGGGTTTTCTAATTACCAGAGGAGCAAAAGATCAGGAAGTTTTCTTGGATCAATTATACCTGACTCTGTTACTGATGCACTAGATCCAGCATATCATGATGTACTGCATAATGTTGCACCTGCAGGGGTCAAAAGCTATGCAGTGATTCGTAAGGTTGAGAAGGTTGCTGATACATCAACTTCAGAAATAGCGGCGTGTCGGGCCACTATTTCTATTATCACCTACAATGGTTACTTCCAGGAGTACAACTTAAGCATCAACAATCAAAATGAGTTCTTGTGGAGTTTAGAGCGTGAATTTAAGCTACTAAATGTCATATTAGATGATGCCATCAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

371

Amino Acids

40.28

Weight (kDa)

6.17

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	13 - 271	1.2e-43	PROPPIN
WD40_WDHD1_1st	PF24817	123 - 237	4.4e-06	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30510 AT4G30510
fragaria_vesca	FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740
malus_domestica	MD16G1259300.v1.1
prunus_persica	Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1
pyrus_communis	pycom16g22700
rosa_chinensis	RchiOBHm_Chr4g0405281
rosa_laevigata	RLG00000008860
rosa_multiflora	Rmu_sc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_5G00349620
rosa_rugosa	Rorug04G0056300 Rorug04G0056400 Rorug04G0056500
rosa_samantha	Rh4AG130200 Rh4BG124600 Rh4DG123800
rosa_wichuraiana	Rw4G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	901
Acc16I	TGCGCA	1 cut(s)	424
Acc36I	ACCTGC	2 cut(s)	519, 901
AccII	CGCG	1 cut(s)	229
AciI	CCGC	2 cut(s)	227, 965
AclWI	GGATC	3 cut(s)	490, 829, 851
AcsI	RAATTY	1 cut(s)	1070
AcuI	CTGAAG	1 cut(s)	939
AfaI	GTAC	3 cut(s)	584, 876, 1019
AfiI	CCNNNNNNNGG	2 cut(s)	231, 439
AflII	CTTAAG	1 cut(s)	1024
AgsI	TTSAA	5 cut(s)	52, 97, 164, 247, 294
AhdI	GACNNNNNGTC	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	1011
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	7 cut(s)	140, 177, 203, 657, 909, 1078, 1110
AluI	AGCT	7 cut(s)	140, 177, 203, 657, 909, 1078, 1110
AlwI	GGATC	3 cut(s)	490, 829, 851
AlwNI	CAGNNNCTG	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	975
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	1070
AspLEI	GCGC	4 cut(s)	44, 149, 425, 706
AspS9I	GGNCC	2 cut(s)	508, 975
AsuHPI	GGTGA	2 cut(s)	218, 985
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	6 cut(s)	83, 223, 437, 685, 715, 1112
BceAI	ACGGC	1 cut(s)	287
BciT130I	CCWGG	1 cut(s)	1013
BfaI	CTAG	3 cut(s)	180, 731, 854
BfmI	CTRYAG	1 cut(s)	894
BfoI	RGCGCY	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	1024
BfuAI	ACCTGC	2 cut(s)	519, 901
BisI	GCNGC	2 cut(s)	555, 966
BlsI	GCNGC	2 cut(s)	556, 967
Bme1390I	CCNGG	1 cut(s)	1013
Bme18I	GGWCC	1 cut(s)	508
BmeRI	GACNNNNNGTC	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	508, 975
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	1013
BmsI	GCATC	6 cut(s)	480, 523, 605, 838, 1038, 1090
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 439
Bse1I	ACTGG	2 cut(s)	63, 255
BseBI	CCWGG	1 cut(s)	1013
BseGI	GGATG	3 cut(s)	94, 448, 596
BseLI	CCNNNNNNNGG	2 cut(s)	231, 439
BseNI	ACTGG	2 cut(s)	63, 255
BseRI	GAGGAG	2 cut(s)	7, 808
BseSI	GKGCMC	1 cut(s)	740
BseXI	GCAGC	1 cut(s)	541
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	977
BsiHKCI	CYCGRG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	2 cut(s)	231, 439
BsmFI	GGGAC	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	977
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	547, 740
Bsp143I	GATC	4 cut(s)	482, 803, 821, 856
BspACI	CCGC	2 cut(s)	227, 965
BspANI	GGCC	1 cut(s)	977
BspFNI	CGCG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	868
BspLI	GGNNCC	1 cut(s)	610
BspMAI	CTGCAG	1 cut(s)	898
BspMI	ACCTGC	2 cut(s)	519, 901
BspPI	GGATC	3 cut(s)	490, 829, 851
BspQI	GCTCTTC	3 cut(s)	204, 273, 465
BspTI	CTTAAG	1 cut(s)	1024
BsrI	ACTGG	2 cut(s)	63, 255
BssMI	GATC	4 cut(s)	482, 803, 821, 856
Bst2UI	CCWGG	1 cut(s)	1013
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	4 cut(s)	25, 204, 273, 465
BstAFI	CTTAAG	1 cut(s)	1024
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	469
BstF5I	GGATG	3 cut(s)	94, 448, 596
BstFNI	CGCG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	4 cut(s)	44, 149, 425, 706
BstKTI	GATC	4 cut(s)	485, 806, 824, 859
BstMBI	GATC	4 cut(s)	482, 803, 821, 856
BstMWI	GCNNNNNNNGC	8 cut(s)	126, 146, 464, 542, 551, 560, 712, 974
BstNI	CCWGG	1 cut(s)	1013
BstSCI	CCNGG	1 cut(s)	1011
BstSFI	CTRYAG	1 cut(s)	894
BstSLI	GKGCMC	1 cut(s)	740
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
BsuRI	GGCC	1 cut(s)	977
BtsCI	GGATG	3 cut(s)	94, 448, 596
BtsI	GCAGTG	1 cut(s)	921
BtsIMutI	CAGTG	3 cut(s)	262, 492, 921
BveI	ACCTGC	2 cut(s)	519, 901
Cac8I	GCNNGC	1 cut(s)	469
CaiI	CAGNNNCTG	1 cut(s)	126
CciI	TCATGA	1 cut(s)	868
CfoI	GCGC	4 cut(s)	44, 149, 425, 706
Cfr13I	GGNCC	2 cut(s)	508, 975
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	3 cut(s)	583, 875, 1018
CviAII	CATG	3 cut(s)	505, 761, 869
CviQI	GTAC	3 cut(s)	583, 875, 1018
DpnI	GATC	4 cut(s)	484, 805, 823, 858
DpnII	GATC	4 cut(s)	482, 803, 821, 856
DriI	GACNNNNNGTC	1 cut(s)	329
Eam1104I	CTCTTC	4 cut(s)	25, 204, 273, 465
Eam1105I	GACNNNNNGTC	1 cut(s)	329
EarI	CTCTTC	4 cut(s)	25, 204, 273, 465
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	939
Eco88I	CYCGRG	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	1011
EcoT38I	GRGCYC	1 cut(s)	547
FaeI	CATG	3 cut(s)	508, 764, 872
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	3 cut(s)	504, 760, 868
FauI	CCCGC	1 cut(s)	234
FauNDI	CATATG	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	555, 966
FokI	GGATG	3 cut(s)	101, 455, 583
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	2 cut(s)	555, 966
FspAI	RTGCGCAY	1 cut(s)	424
FspBI	CTAG	3 cut(s)	180, 731, 854
FspI	TGCGCA	1 cut(s)	424
GlaI	GCGC	4 cut(s)	43, 148, 424, 705
GluI	GCNGC	2 cut(s)	555, 966
GsuI	CTGGAG	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	977
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	4 cut(s)	44, 149, 425, 706
Hin1II	CATG	3 cut(s)	508, 764, 872
Hin6I	GCGC	4 cut(s)	42, 147, 423, 704
HinP1I	GCGC	4 cut(s)	42, 147, 423, 704
HinfI	GANTC	6 cut(s)	59, 107, 123, 621, 836, 919
HphI	GGTGA	2 cut(s)	218, 985
Hpy188I	TCNGA	5 cut(s)	601, 620, 637, 663, 958
Hpy188III	TCNNGA	3 cut(s)	272, 807, 869
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	2 cut(s)	58, 928
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	581
HpyF10VI	GCNNNNNNNGC	8 cut(s)	126, 146, 464, 542, 551, 560, 712, 974
HpySE526I	ACGT	1 cut(s)	581
Hsp92II	CATG	3 cut(s)	508, 764, 872
HspAI	GCGC	4 cut(s)	42, 147, 423, 704
Kzo9I	GATC	4 cut(s)	482, 803, 821, 856
LguI	GCTCTTC	3 cut(s)	204, 273, 465
LmnI	GCTCC	2 cut(s)	200, 795
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	6 cut(s)	480, 523, 605, 838, 1038, 1090
MaeI	CTAG	3 cut(s)	180, 731, 854
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	3 cut(s)	449, 841, 1004
MalI	GATC	4 cut(s)	484, 805, 823, 858
MboI	GATC	4 cut(s)	482, 803, 821, 856
MboII	GAAGA	7 cut(s)	12, 15, 176, 221, 260, 452, 561
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	2 cut(s)	547, 740
MluCI	AATT	4 cut(s)	558, 784, 825, 1070
MlyI	GAGTC	4 cut(s)	53, 117, 630, 830
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	25, 28, 47, 659, 786
MseI	TTAA	2 cut(s)	1025, 1074
MspCI	CTTAAG	1 cut(s)	1024
MspR9I	CCNGG	1 cut(s)	1013
MunI	CAATTG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	1013
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	8 cut(s)	126, 146, 464, 542, 551, 560, 712, 974
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	4 cut(s)	482, 803, 821, 856
NlaIII	CATG	3 cut(s)	508, 764, 872
NlaIV	GGNNCC	1 cut(s)	610
NsbI	TGCGCA	1 cut(s)	424
PagI	TCATGA	1 cut(s)	868
PaqCI	CACCTGC	1 cut(s)	901
PciSI	GCTCTTC	3 cut(s)	204, 273, 465
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	107, 919
PfoI	TCCNGGA	1 cut(s)	1011
PkrI	GCNGC	2 cut(s)	556, 967
PleI	GAGTC	4 cut(s)	53, 117, 629, 830
PpsI	GAGTC	4 cut(s)	53, 117, 629, 830
Psp6I	CCWGG	1 cut(s)	1011
PspGI	CCWGG	1 cut(s)	1011
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	2 cut(s)	508, 975
PstI	CTGCAG	1 cut(s)	898
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	3 cut(s)	584, 876, 1019
RsaNI	GTAC	3 cut(s)	583, 875, 1018
SapI	GCTCTTC	3 cut(s)	204, 273, 465
SaqAI	TTAA	2 cut(s)	1025, 1074
SatI	GCNGC	2 cut(s)	555, 966
Sau3AI	GATC	4 cut(s)	482, 803, 821, 856
Sau96I	GGNCC	2 cut(s)	508, 975
SbfI	CCTGCAGG	1 cut(s)	898
SchI	GAGTC	4 cut(s)	53, 117, 630, 830
ScrFI	CCNGG	1 cut(s)	1013
SdaI	CCTGCAGG	1 cut(s)	898
SduI	GDGCHC	2 cut(s)	547, 740
SfaNI	GCATC	6 cut(s)	480, 523, 605, 838, 1038, 1090
SfcI	CTRYAG	1 cut(s)	894
SinI	GGWCC	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	1024
SmoI	CTYRAG	1 cut(s)	1024
Sse8387I	CCTGCAGG	1 cut(s)	898
Sse9I	AATT	4 cut(s)	558, 784, 825, 1070
SsiI	CCGC	2 cut(s)	227, 965
SspMI	CTAG	3 cut(s)	180, 731, 854
StyD4I	CCNGG	1 cut(s)	1011
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	2 cut(s)	105, 271
TasI	AATT	4 cut(s)	558, 784, 825, 1070
TatI	WGTACW	2 cut(s)	874, 1017
TauI	GCSGC	1 cut(s)	968
TfiI	GAWTC	2 cut(s)	107, 919
Tru1I	TTAA	2 cut(s)	1025, 1074
Tru9I	TTAA	2 cut(s)	1025, 1074
TscAI	CASTG	3 cut(s)	262, 492, 921
TseI	GCWGC	1 cut(s)	554
TspDTI	ATGAA	4 cut(s)	147, 326, 735, 749
TspRI	CASTG	3 cut(s)	262, 492, 921
Vha464I	CTTAAG	1 cut(s)	1024
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	1 cut(s)	1070
XspI	CTAG	3 cut(s)	180, 731, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.