Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007350

Physical Location & Seq

Genomic Coordinates Reverse (-)

19946416 .. 19951872

Gene Structure 5457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG123800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCAAATCAGTCCTCCTCCTCTTCCTACCCGATTCTCTGCGCTTCCTTCAACCAAGACTCCAGTTGCTTTGCCATAGGCACAAGGAATGGCTTCAAAGTATTCGATTCTAACACAGGCAGACTCTGCTATGAAGGAGTTATTGGCGCTTTCGCTATTGTTGAAATGCTATTTAGCTCTAGTCTTCTTGCAATTGTTGGAGCTGGTGAAGAGCCATCTCTATCCCCGCGTCGTCTCTGTTTGTTCAATACAACCAGTGGAACTGCTCTTCGAGAATTGAACTTTTTGACTTCAATACTTGCCGTTCATATGAATAGGAAAAGACTTGTTGTCATCTTACAGGACAAAACATATGTATATGACATAAATAGTCTTGCAATGTTGGACACTATTGATACTGTATCAAATATAAAAGGGCTCTGCGCCTTCTCCCCGAGTTTGGATGGTTGTTACTTGGCTCTTCCTGCCAGCATCTCCAAAGGATCAGTGTTGTTATACAATGTCATGGACCTGCATTTACATTGTGAGATTGATGCTCATAGAGCCCCACTTGCTGCAATTGCACTTTCTTCCAATGGGACGTACATAGCAACAGCATCCGAACAGGGAACCATTATCAGAGTCCATCTAGTATCAGAAGCAACAAAGTCTTATAGCTTTCGGAGAGGAACATATCCATCTACTGTATTCTCCTTATCATTTGCGCCATCTATGCAACTGCCGGATATTCTCGTGGGCACAAGTTCATCTGGTTCTGTTCATGCTTTCTCTCTGGGGTTTTCTAATTACCAGAGCAGGAGCAAAAGATCAGGAACTTTTCTTGGATCAATTATACCCGACTCTGTTACTGATGCAATAGATCCAGCATATCATGATGTACTGCATAATGTTGCACCTGCAGGGGTCAAAAGCTATGCAGTGATTCGTAAGGTTGAGAAGGTTGCTGATACATCAACTTCAGAAATAGTGGCGTGTCGGGCCACTATTTCTATTATCACCTACAATGGTTACTTCCAGGAGTACAACTTAAGCATCAACAATCAAAATGAGTTCTTGTGGAGTCTGGAGCGTGAATTTAGGCTACTAAATGTCATATTAGATGATGCCGTCGGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

372

Amino Acids

40.34

Weight (kDa)

6.06

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	13 - 275	5.6e-42	PROPPIN
Beta-prop_THOC3	PF25174	83 - 239	8.6e-06	THOC3 beta-propeller domain
WD40_Prp19	PF24814	100 - 205	1.7e-06	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	123 - 220	1e-05	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30510 AT4G30510
fragaria_vesca	FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740
malus_domestica	MD16G1259300.v1.1
prunus_persica	Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1
pyrus_communis	pycom16g22700
rosa_chinensis	RchiOBHm_Chr4g0405281
rosa_laevigata	RLG00000008860
rosa_multiflora	Rmu_sc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_5G00349620
rosa_rugosa	Rorug04G0056300 Rorug04G0056400 Rorug04G0056500
rosa_samantha	Rh4AG130200 Rh4BG124600 Rh4DG123800
rosa_wichuraiana	Rw4G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	904
Acc36I	ACCTGC	2 cut(s)	519, 904
AccII	CGCG	1 cut(s)	229
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	3 cut(s)	490, 832, 854
AcsI	RAATTY	1 cut(s)	1073
AcuI	CTGAAG	1 cut(s)	942
AfaI	GTAC	3 cut(s)	584, 879, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflII	CTTAAG	1 cut(s)	1027
AgsI	TTSAA	6 cut(s)	52, 97, 164, 247, 280, 294
AhdI	GACNNNNNGTC	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	177, 203, 657, 912
AluI	AGCT	4 cut(s)	177, 203, 657, 912
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	3 cut(s)	490, 832, 854
AlwNI	CAGNNNCTG	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	978
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	1073
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	4 cut(s)	44, 149, 425, 706
AspS9I	GGNCC	2 cut(s)	508, 978
AsuHPI	GGTGA	2 cut(s)	218, 988
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	740
BanII	GRGCYC	2 cut(s)	420, 547
BauI	CACGAG	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	5 cut(s)	223, 437, 633, 685, 715
BceAI	ACGGC	2 cut(s)	287, 1091
BciT130I	CCWGG	1 cut(s)	1016
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	180, 629
BfmI	CTRYAG	1 cut(s)	897
BfoI	RGCGCY	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	1027
BfuAI	ACCTGC	2 cut(s)	519, 904
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	1 cut(s)	1016
Bme18I	GGWCC	1 cut(s)	508
BmeRI	GACNNNNNGTC	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	508, 978
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	1016
BmsI	GCATC	6 cut(s)	480, 523, 605, 841, 1041, 1093
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	2 cut(s)	46, 1085
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	63, 255
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	1016
BseGI	GGATG	2 cut(s)	448, 596
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	63, 255
BseRI	GAGGAG	2 cut(s)	7, 10
BseSI	GKGCMC	1 cut(s)	740
BseXI	GCAGC	1 cut(s)	541
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	980
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	592
BsnI	GGCC	1 cut(s)	980
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	3 cut(s)	420, 547, 740
Bsp143I	GATC	4 cut(s)	482, 806, 824, 859
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	980
BspFNI	CGCG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	1 cut(s)	610
BspMAI	CTGCAG	1 cut(s)	901
BspMI	ACCTGC	2 cut(s)	519, 904
BspPI	GGATC	3 cut(s)	490, 832, 854
BspQI	GCTCTTC	3 cut(s)	204, 273, 465
BspTI	CTTAAG	1 cut(s)	1027
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	63, 255
BssMI	GATC	4 cut(s)	482, 806, 824, 859
BssSI	CACGAG	1 cut(s)	731
Bst2BI	CACGAG	1 cut(s)	731
Bst2UI	CCWGG	1 cut(s)	1016
Bst4CI	ACNGT	2 cut(s)	400, 685
Bst6I	CTCTTC	4 cut(s)	28, 204, 273, 465
BstAFI	CTTAAG	1 cut(s)	1027
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	469
BstF5I	GGATG	2 cut(s)	448, 596
BstFNI	CGCG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	4 cut(s)	44, 149, 425, 706
BstKTI	GATC	4 cut(s)	485, 809, 827, 862
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	4 cut(s)	482, 806, 824, 859
BstMWI	GCNNNNNNNGC	7 cut(s)	126, 464, 542, 551, 560, 712, 977
BstNI	CCWGG	1 cut(s)	1016
BstSCI	CCNGG	1 cut(s)	1014
BstSFI	CTRYAG	1 cut(s)	897
BstSLI	GKGCMC	1 cut(s)	740
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	859
BstYI	RGATCY	1 cut(s)	859
BsuRI	GGCC	1 cut(s)	980
BtsCI	GGATG	2 cut(s)	448, 596
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	3 cut(s)	262, 492, 924
BveI	ACCTGC	2 cut(s)	519, 904
Cac8I	GCNNGC	1 cut(s)	469
CaiI	CAGNNNCTG	1 cut(s)	126
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	4 cut(s)	44, 149, 425, 706
Cfr13I	GGNCC	2 cut(s)	508, 978
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	3 cut(s)	583, 878, 1021
CviAII	CATG	3 cut(s)	505, 761, 872
CviQI	GTAC	3 cut(s)	583, 878, 1021
DpnI	GATC	4 cut(s)	484, 808, 826, 861
DpnII	GATC	4 cut(s)	482, 806, 824, 859
DriI	GACNNNNNGTC	1 cut(s)	329
Eam1104I	CTCTTC	4 cut(s)	28, 204, 273, 465
Eam1105I	GACNNNNNGTC	1 cut(s)	329
EarI	CTCTTC	4 cut(s)	28, 204, 273, 465
Eco24I	GRGCYC	2 cut(s)	420, 547
Eco47I	GGWCC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	942
Eco88I	CYCGRG	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	1014
EcoT38I	GRGCYC	2 cut(s)	420, 547
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	3 cut(s)	508, 764, 875
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	3 cut(s)	504, 760, 871
FauI	CCCGC	1 cut(s)	234
FauNDI	CATATG	2 cut(s)	309, 352
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	2 cut(s)	455, 583
FriOI	GRGCYC	2 cut(s)	420, 547
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	2 cut(s)	180, 629
GlaI	GCGC	4 cut(s)	43, 148, 424, 705
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	2 cut(s)	46, 1085
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	980
HapII	CCGG	1 cut(s)	722
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	4 cut(s)	44, 149, 425, 706
Hin1II	CATG	3 cut(s)	508, 764, 875
Hin6I	GCGC	4 cut(s)	42, 147, 423, 704
HinP1I	GCGC	4 cut(s)	42, 147, 423, 704
HinfI	GANTC	8 cut(s)	34, 59, 107, 123, 621, 839, 922, 1060
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	2 cut(s)	218, 988
Hpy188I	TCNGA	5 cut(s)	601, 620, 637, 663, 961
Hpy188III	TCNNGA	4 cut(s)	272, 810, 872, 1064
Hpy99I	CGWCG	2 cut(s)	234, 1112
HpyAV	CCTTC	4 cut(s)	58, 128, 436, 931
HpyCH4III	ACNGT	2 cut(s)	400, 685
HpyCH4IV	ACGT	1 cut(s)	581
HpyF10VI	GCNNNNNNNGC	7 cut(s)	126, 464, 542, 551, 560, 712, 977
HpySE526I	ACGT	1 cut(s)	581
Hsp92II	CATG	3 cut(s)	508, 764, 875
HspAI	GCGC	4 cut(s)	42, 147, 423, 704
Kzo9I	GATC	4 cut(s)	482, 806, 824, 859
LguI	GCTCTTC	3 cut(s)	204, 273, 465
LmnI	GCTCC	3 cut(s)	200, 798, 1066
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	6 cut(s)	480, 523, 605, 841, 1041, 1093
MaeI	CTAG	2 cut(s)	180, 629
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	3 cut(s)	449, 844, 1007
MalI	GATC	4 cut(s)	484, 808, 826, 861
MboI	GATC	4 cut(s)	482, 806, 824, 859
MboII	GAAGA	6 cut(s)	15, 176, 221, 260, 452, 561
MfeI	CAATTG	2 cut(s)	192, 558
MflI	RGATCY	1 cut(s)	859
MhlI	GDGCHC	3 cut(s)	420, 547, 740
MluCI	AATT	6 cut(s)	192, 275, 558, 784, 828, 1073
MlyI	GAGTC	5 cut(s)	53, 117, 630, 833, 1069
MmeI	TCCRAC	2 cut(s)	178, 363
MnlI	CCTC	4 cut(s)	25, 28, 31, 659
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	1 cut(s)	1028
MspCI	CTTAAG	1 cut(s)	1027
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	1 cut(s)	1016
MunI	CAATTG	2 cut(s)	192, 558
MvaI	CCWGG	1 cut(s)	1016
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	7 cut(s)	126, 464, 542, 551, 560, 712, 977
NdeI	CATATG	2 cut(s)	309, 352
NdeII	GATC	4 cut(s)	482, 806, 824, 859
NlaIII	CATG	3 cut(s)	508, 764, 875
NlaIV	GGNNCC	1 cut(s)	610
PagI	TCATGA	1 cut(s)	871
PaqCI	CACCTGC	1 cut(s)	904
PciSI	GCTCTTC	3 cut(s)	204, 273, 465
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	34, 107, 922
PfoI	TCCNGGA	1 cut(s)	1014
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	5 cut(s)	53, 117, 629, 833, 1068
PpsI	GAGTC	5 cut(s)	53, 117, 629, 833, 1068
Psp6I	CCWGG	1 cut(s)	1014
PspGI	CCWGG	1 cut(s)	1014
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	2 cut(s)	508, 978
PstI	CTGCAG	1 cut(s)	901
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	859
RsaI	GTAC	3 cut(s)	584, 879, 1022
RsaNI	GTAC	3 cut(s)	583, 878, 1021
SapI	GCTCTTC	3 cut(s)	204, 273, 465
SaqAI	TTAA	1 cut(s)	1028
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	4 cut(s)	482, 806, 824, 859
Sau96I	GGNCC	2 cut(s)	508, 978
SbfI	CCTGCAGG	1 cut(s)	901
SchI	GAGTC	5 cut(s)	53, 117, 630, 833, 1069
ScrFI	CCNGG	1 cut(s)	1016
SdaI	CCTGCAGG	1 cut(s)	901
SduI	GDGCHC	3 cut(s)	420, 547, 740
SfaNI	GCATC	6 cut(s)	480, 523, 605, 841, 1041, 1093
SfcI	CTRYAG	1 cut(s)	897
SinI	GGWCC	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	1027
SmoI	CTYRAG	1 cut(s)	1027
Sse8387I	CCTGCAGG	1 cut(s)	901
Sse9I	AATT	6 cut(s)	192, 275, 558, 784, 828, 1073
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	180, 629
StyD4I	CCNGG	1 cut(s)	1014
TaaI	ACNGT	2 cut(s)	400, 685
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	2 cut(s)	105, 271
TasI	AATT	6 cut(s)	192, 275, 558, 784, 828, 1073
TatI	WGTACW	2 cut(s)	877, 1020
TfiI	GAWTC	3 cut(s)	34, 107, 922
Tru1I	TTAA	1 cut(s)	1028
Tru9I	TTAA	1 cut(s)	1028
TscAI	CASTG	3 cut(s)	262, 492, 924
TseI	GCWGC	1 cut(s)	554
TspDTI	ATGAA	5 cut(s)	147, 296, 326, 735, 749
TspRI	CASTG	3 cut(s)	262, 492, 924
Vha464I	CTTAAG	1 cut(s)	1027
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	1 cut(s)	1073
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	2 cut(s)	180, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.