Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007350

Physical Location & Seq

Genomic Coordinates Reverse (-)

22664538 .. 22669994

Gene Structure 5457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCAAATCAATCCTCCTCTTCTTCCTACCCAATCCTCTGCGCTTCCTTCAACCAGGACTCCAGTTGCTTTGCCATAGGCACAAAGGATGGCTTCAAAGTATTCGATTCTAATACAGGCAGACTCTGCTATGAACGAGGCAAGTTATCAAATTTATTTACTCCTTCTATTGGCGCTTTCGCTATTGTTGAAATGCTATTCAGCTCTAGTCTTCTTGCCATTGTTGGAGCTGGTGAAGAGCCATCTCTATCCCCGCGTCGGCTCTGTTTGTTCAATACAACCAGTGGAACTGCTCTTCGAGAATTGAACTTTTTGACTTCAATACTGGCCGTTCGTATGAATAGGAAAAGACTTGTTGTCATCTTACAGGACAAAGCATATGTATATGACATAAATAGTCTTGCAATCTTGGACACTATTGATACTGTATCAAATGTAAAAGGGCTTTGCGCGTTCTCCCCGAGTTTGGATGGTTGTTACTTGGCTCTTCCTGCCAGCATCTCCAAAGGATCAGTGTTGTTATACAATGTCATGGACCTGCATTTACATTGTGAGATTGATGCTCATAGAGCCCCACTTGCTGCAATTGCTCTTTCTTCCAATGGGACGTACATAGCAACAGCATCCGAACAGGGAACCATTATCAGAGTCCATCTAGTATCAGAAGCAACAAAGTCTTATAGCTTTCGGAGAGGAACATATCCATCTACTATATTCTCCTTATCATTTGCGCCATCTATGCAACTGCCAGATATTCTTGTGGGCACAAGTTCATCTGGTTCTGTTCATGCTTTCTCTCTGGGGTTTTCTAATTACCAGAGGAGCAAAAGATCAGGAAGTTTTCTTGGATCAATTATACCTGACTCTGTTACTGATGCTCTAGATCCAGCATATCATGATGTACTGCATAATGTTGCACCTGCAGGGGTCAAAAGCTATGCAGTGATTCGTAAGGTTGAGAAGGTTGCTGATACATCAACTTCAGAAATAGTGGCGTGTCGGGCCACTATTTCTATTATCACCTACAATGGTTACTTCCAGGAGTACAACTTAAGCATCAACAATCAAAATGAGTTCTTGTGGAGTCTGGAGCGTGAATTTAGGCTACTAAATGTCATATTAGATGATGCCGTCAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

41.25

Weight (kDa)

6.39

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	13 - 280	1.2e-43	PROPPIN
WD40_WDHD1_1st	PF24817	132 - 246	4.8e-06	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30510 AT4G30510
fragaria_vesca	FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740 FvH4_4g08740
malus_domestica	MD16G1259300.v1.1
prunus_persica	Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1 Prupe.1G100700_v2.0.a1
pyrus_communis	pycom16g22700
rosa_chinensis	RchiOBHm_Chr4g0405281
rosa_laevigata	RLG00000008860
rosa_multiflora	Rmu_sc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_5G00349620
rosa_rugosa	Rorug04G0056300 Rorug04G0056400 Rorug04G0056500
rosa_samantha	Rh4AG130200 Rh4BG124600 Rh4DG123800
rosa_wichuraiana	Rw4G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	928
Acc36I	ACCTGC	2 cut(s)	546, 928
AccII	CGCG	2 cut(s)	256, 452
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	3 cut(s)	517, 856, 878
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	151, 1097
AcuI	CTGAAG	1 cut(s)	966
AfaI	GTAC	3 cut(s)	611, 903, 1046
AfiI	CCNNNNNNNGG	3 cut(s)	170, 258, 466
AflII	CTTAAG	1 cut(s)	1051
AgsI	TTSAA	6 cut(s)	52, 97, 191, 274, 307, 321
AhdI	GACNNNNNGTC	1 cut(s)	356
AjnI	CCWGG	2 cut(s)	54, 1038
AluBI	AGCT	5 cut(s)	204, 230, 684, 936, 1137
AluI	AGCT	5 cut(s)	204, 230, 684, 936, 1137
AlwI	GGATC	3 cut(s)	517, 856, 878
AlwNI	CAGNNNCTG	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	460
AoxI	GGCC	2 cut(s)	327, 1002
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	2 cut(s)	151, 1097
AspLEI	GCGC	4 cut(s)	44, 176, 452, 733
AspS9I	GGNCC	2 cut(s)	535, 1002
AsuHPI	GGTGA	2 cut(s)	245, 1012
AvaI	CYCGRG	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	535
BaeGI	GKGCMC	1 cut(s)	767
BanII	GRGCYC	1 cut(s)	574
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	6 cut(s)	83, 250, 464, 660, 712, 742
BceAI	ACGGC	2 cut(s)	314, 1115
BciT130I	CCWGG	2 cut(s)	56, 1040
BfaI	CTAG	3 cut(s)	207, 656, 881
BfmI	CTRYAG	1 cut(s)	921
BfoI	RGCGCY	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	1051
BfuAI	ACCTGC	2 cut(s)	546, 928
BisI	GCNGC	1 cut(s)	582
BlsI	GCNGC	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	56, 1040
Bme18I	GGWCC	1 cut(s)	535
BmeRI	GACNNNNNGTC	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	535, 1002
BmiI	GGNNCC	1 cut(s)	637
BmrFI	CCNGG	2 cut(s)	56, 1040
BmsI	GCATC	6 cut(s)	507, 550, 632, 865, 1065, 1117
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	2 cut(s)	46, 1109
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 258, 466
Bse1I	ACTGG	3 cut(s)	63, 282, 330
BseBI	CCWGG	2 cut(s)	56, 1040
BseGI	GGATG	3 cut(s)	94, 475, 623
BseLI	CCNNNNNNNGG	3 cut(s)	170, 258, 466
BseNI	ACTGG	3 cut(s)	63, 282, 330
BseRI	GAGGAG	2 cut(s)	7, 835
BseSI	GKGCMC	1 cut(s)	767
BseXI	GCAGC	1 cut(s)	568
Bsh1236I	CGCG	2 cut(s)	256, 452
BshFI	GGCC	2 cut(s)	329, 1004
BsiHKCI	CYCGRG	1 cut(s)	460
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	3 cut(s)	170, 258, 466
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	2 cut(s)	329, 1004
BsoBI	CYCGRG	1 cut(s)	460
Bsp1286I	GDGCHC	2 cut(s)	574, 767
Bsp143I	GATC	4 cut(s)	509, 830, 848, 883
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	2 cut(s)	329, 1004
BspFNI	CGCG	2 cut(s)	256, 452
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	1 cut(s)	637
BspMAI	CTGCAG	1 cut(s)	925
BspMI	ACCTGC	2 cut(s)	546, 928
BspPI	GGATC	3 cut(s)	517, 856, 878
BspQI	GCTCTTC	3 cut(s)	231, 300, 492
BspTI	CTTAAG	1 cut(s)	1051
BsrI	ACTGG	3 cut(s)	63, 282, 330
BssMI	GATC	4 cut(s)	509, 830, 848, 883
Bst2UI	CCWGG	2 cut(s)	56, 1040
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	4 cut(s)	25, 231, 300, 492
BstAFI	CTTAAG	1 cut(s)	1051
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	496
BstF5I	GGATG	3 cut(s)	94, 475, 623
BstFNI	CGCG	2 cut(s)	256, 452
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	4 cut(s)	44, 176, 452, 733
BstKTI	GATC	4 cut(s)	512, 833, 851, 886
BstMBI	GATC	4 cut(s)	509, 830, 848, 883
BstMWI	GCNNNNNNNGC	7 cut(s)	126, 491, 569, 578, 587, 739, 1001
BstNI	CCWGG	2 cut(s)	56, 1040
BstSCI	CCNGG	2 cut(s)	54, 1038
BstSFI	CTRYAG	1 cut(s)	921
BstSLI	GKGCMC	1 cut(s)	767
BstUI	CGCG	2 cut(s)	256, 452
BstV1I	GCAGC	1 cut(s)	568
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
BsuRI	GGCC	2 cut(s)	329, 1004
BtsCI	GGATG	3 cut(s)	94, 475, 623
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	3 cut(s)	289, 519, 948
BveI	ACCTGC	2 cut(s)	546, 928
Cac8I	GCNNGC	1 cut(s)	496
CaiI	CAGNNNCTG	1 cut(s)	126
CciI	TCATGA	1 cut(s)	895
CfoI	GCGC	4 cut(s)	44, 176, 452, 733
Cfr13I	GGNCC	2 cut(s)	535, 1002
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	3 cut(s)	610, 902, 1045
CviAII	CATG	3 cut(s)	532, 788, 896
CviQI	GTAC	3 cut(s)	610, 902, 1045
DpnI	GATC	4 cut(s)	511, 832, 850, 885
DpnII	GATC	4 cut(s)	509, 830, 848, 883
DriI	GACNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	4 cut(s)	25, 231, 300, 492
Eam1105I	GACNNNNNGTC	1 cut(s)	356
EarI	CTCTTC	4 cut(s)	25, 231, 300, 492
Eco24I	GRGCYC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	966
Eco88I	CYCGRG	1 cut(s)	460
EcoRII	CCWGG	2 cut(s)	54, 1038
EcoT38I	GRGCYC	1 cut(s)	574
FaeI	CATG	3 cut(s)	535, 791, 899
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	3 cut(s)	531, 787, 895
FauI	CCCGC	1 cut(s)	261
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	582
FokI	GGATG	3 cut(s)	101, 482, 610
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	1 cut(s)	582
FspBI	CTAG	3 cut(s)	207, 656, 881
GlaI	GCGC	4 cut(s)	43, 175, 451, 732
GluI	GCNGC	1 cut(s)	582
GsuI	CTGGAG	2 cut(s)	46, 1109
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	329, 1004
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	4 cut(s)	44, 176, 452, 733
Hin1II	CATG	3 cut(s)	535, 791, 899
Hin6I	GCGC	4 cut(s)	42, 174, 450, 731
HinP1I	GCGC	4 cut(s)	42, 174, 450, 731
HinfI	GANTC	7 cut(s)	59, 107, 123, 648, 863, 946, 1084
HphI	GGTGA	2 cut(s)	245, 1012
Hpy188I	TCNGA	5 cut(s)	628, 647, 664, 690, 985
Hpy188III	TCNNGA	5 cut(s)	299, 834, 881, 896, 1088
Hpy99I	CGWCG	1 cut(s)	261
HpyAV	CCTTC	3 cut(s)	58, 174, 955
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	608
HpyCH4V	TGCA	8 cut(s)	404, 541, 584, 742, 907, 917, 923, 941
HpyF10VI	GCNNNNNNNGC	7 cut(s)	126, 491, 569, 578, 587, 739, 1001
HpySE526I	ACGT	1 cut(s)	608
Hsp92II	CATG	3 cut(s)	535, 791, 899
HspAI	GCGC	4 cut(s)	42, 174, 450, 731
Kzo9I	GATC	4 cut(s)	509, 830, 848, 883
LguI	GCTCTTC	3 cut(s)	231, 300, 492
LmnI	GCTCC	3 cut(s)	227, 822, 1090
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	6 cut(s)	507, 550, 632, 865, 1065, 1117
MaeI	CTAG	3 cut(s)	207, 656, 881
MaeII	ACGT	1 cut(s)	608
MaeIII	GTNAC	3 cut(s)	476, 868, 1031
MalI	GATC	4 cut(s)	511, 832, 850, 885
MboI	GATC	4 cut(s)	509, 830, 848, 883
MboII	GAAGA	7 cut(s)	12, 15, 203, 248, 287, 479, 588
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	2 cut(s)	574, 767
MluCI	AATT	6 cut(s)	151, 302, 585, 811, 852, 1097
MlyI	GAGTC	5 cut(s)	53, 117, 657, 857, 1093
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	6 cut(s)	25, 28, 47, 131, 686, 813
MseI	TTAA	1 cut(s)	1052
MspCI	CTTAAG	1 cut(s)	1051
MspR9I	CCNGG	2 cut(s)	56, 1040
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	2 cut(s)	56, 1040
MvnI	CGCG	2 cut(s)	256, 452
MwoI	GCNNNNNNNGC	7 cut(s)	126, 491, 569, 578, 587, 739, 1001
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	4 cut(s)	509, 830, 848, 883
NlaIII	CATG	3 cut(s)	535, 791, 899
NlaIV	GGNNCC	1 cut(s)	637
PagI	TCATGA	1 cut(s)	895
PaqCI	CACCTGC	1 cut(s)	928
PciSI	GCTCTTC	3 cut(s)	231, 300, 492
PfeI	GAWTC	2 cut(s)	107, 946
PfoI	TCCNGGA	1 cut(s)	1038
PkrI	GCNGC	1 cut(s)	583
PleI	GAGTC	5 cut(s)	53, 117, 656, 857, 1092
PpsI	GAGTC	5 cut(s)	53, 117, 656, 857, 1092
Psp6I	CCWGG	2 cut(s)	54, 1038
PspGI	CCWGG	2 cut(s)	54, 1038
PspN4I	GGNNCC	1 cut(s)	637
PspPI	GGNCC	2 cut(s)	535, 1002
PstI	CTGCAG	1 cut(s)	925
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	883
RsaI	GTAC	3 cut(s)	611, 903, 1046
RsaNI	GTAC	3 cut(s)	610, 902, 1045
SapI	GCTCTTC	3 cut(s)	231, 300, 492
SaqAI	TTAA	1 cut(s)	1052
SatI	GCNGC	1 cut(s)	582
Sau3AI	GATC	4 cut(s)	509, 830, 848, 883
Sau96I	GGNCC	2 cut(s)	535, 1002
SbfI	CCTGCAGG	1 cut(s)	925
SchI	GAGTC	5 cut(s)	53, 117, 657, 857, 1093
ScrFI	CCNGG	2 cut(s)	56, 1040
SdaI	CCTGCAGG	1 cut(s)	925
SduI	GDGCHC	2 cut(s)	574, 767
SfaNI	GCATC	6 cut(s)	507, 550, 632, 865, 1065, 1117
SfcI	CTRYAG	1 cut(s)	921
SinI	GGWCC	1 cut(s)	535
SmlI	CTYRAG	1 cut(s)	1051
SmoI	CTYRAG	1 cut(s)	1051
Sse8387I	CCTGCAGG	1 cut(s)	925
Sse9I	AATT	6 cut(s)	151, 302, 585, 811, 852, 1097
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	3 cut(s)	207, 656, 881
StyD4I	CCNGG	2 cut(s)	54, 1038
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	611
TaqI	TCGA	2 cut(s)	105, 298
TasI	AATT	6 cut(s)	151, 302, 585, 811, 852, 1097
TatI	WGTACW	2 cut(s)	901, 1044
TfiI	GAWTC	2 cut(s)	107, 946
Tru1I	TTAA	1 cut(s)	1052
Tru9I	TTAA	1 cut(s)	1052
TscAI	CASTG	3 cut(s)	289, 519, 948
TseI	GCWGC	1 cut(s)	581
TspDTI	ATGAA	4 cut(s)	147, 353, 762, 776
TspRI	CASTG	3 cut(s)	289, 519, 948
Vha464I	CTTAAG	1 cut(s)	1051
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	2 cut(s)	151, 1097
XbaI	TCTAGA	1 cut(s)	880
XspI	CTAG	3 cut(s)	207, 656, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.