AT4G30845

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012213
Physical Location & Seq
Forward (+)
15019833 .. 15020509
677 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30845.1

Sequence Viewer

Length: 345 bp
ATGCTGACCTTACAACACAGTAGCTTCGTCTCATTCTGTCCTAACGACAACAAACTCCGAAGCTTTGCTAATGGCGTCACGATAATGTCGAAAAGGAGAGACTTTTCAGAGAAATCAAACGAAGAACGACCCATCTTGCGAATCAAAGTCCCCAACACAATCGTCGCTCGATCTGCGATCGCTGTTCTGAGTTTGGGATTCATCGATGCTGGGTATAGTGGTGATTGGTCAAGAATAGGTGTGATCTCCAAAGAAACAGAGGAATTGTTGAAGATTGCTGCTTTTCTTGTTGTTCCTCTCTGTATCTTCCTCGCCCTTTCATTTTCCAATGATTCAACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.63

Weight (kDa)

7.79

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7887 PF25397 50 - 111 4e-35 Domain of unknown function (DUF7887)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012213)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30845
fragaria_vesca FvH4_4g09760 FvH4_4g09760
malus_domestica MD04G1182900.v1.1 MD12G1196500.v1.1
prunus_persica Prupe.1G101900_v2.0.a1
pyrus_communis pycom04g16060 pycom12g18270
rosa_chinensis RchiOBHm_Chr4g0405451
rosa_laevigata RLG00000008841
rosa_multiflora Rmu_sc0000575.1_g000021
rosa_roxburghii Rroxscaffold_5G00349920
rosa_rugosa Rorug04G0060300 Rorug04G0060400
rosa_samantha Rh4AG132000 Rh4BG126900 Rh4CG139400 Rh4DG126000
rosa_wichuraiana Rw4G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 75
AgsI TTSAA 2 cut(s) 271, 336
AluBI AGCT 2 cut(s) 24, 63
AluI AGCT 2 cut(s) 24, 63
Alw26I GTCTC 2 cut(s) 34, 93
ApeKI GCWGC 1 cut(s) 278
AsiSI GCGATCGC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 233
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 140
BcoDI GTCTC 2 cut(s) 34, 93
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmsI GCATC 1 cut(s) 196
Bsa29I ATCGAT 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 204
BseMII CTCAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 265
BseYI CCCAGC 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 180
BshVI ATCGAT 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 34, 93
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 170, 177, 243
BspCNI CTCAG 1 cut(s) 180
BspDI ATCGAT 1 cut(s) 204
BssMI GATC 3 cut(s) 170, 177, 243
BssNI GRCGYC 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 188
BstKTI GATC 3 cut(s) 173, 180, 246
BstMAI GTCTC 2 cut(s) 34, 93
BstMBI GATC 3 cut(s) 170, 177, 243
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 265
Bsu15I ATCGAT 1 cut(s) 204
BsuTUI ATCGAT 1 cut(s) 204
ClaI ATCGAT 1 cut(s) 204
CseI GACGC 1 cut(s) 64
CviJI RGCY 2 cut(s) 24, 63
CviKI_1 RGCY 2 cut(s) 24, 63
DdeI CTNAG 1 cut(s) 188
DpnI GATC 3 cut(s) 172, 179, 245
DpnII GATC 3 cut(s) 170, 177, 243
Esp3I CGTCTC 1 cut(s) 34
FaiI YATR 1 cut(s) 216
FaqI GGGAC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 279
GsaI CCCAGC 1 cut(s) 213
HgaI GACGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 3 cut(s) 141, 198, 332
HphI GGTGA 1 cut(s) 233
Hpy188I TCNGA 3 cut(s) 59, 109, 189
Hpy188III TCNNGA 2 cut(s) 79, 231
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 188
Hsp92I GRCGYC 1 cut(s) 75
Kzo9I GATC 3 cut(s) 170, 177, 243
LpnPI CCDG 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 76
MalI GATC 3 cut(s) 172, 179, 245
MboI GATC 3 cut(s) 170, 177, 243
MboII GAAGA 3 cut(s) 134, 283, 298
MluCI AATT 1 cut(s) 263
MnlI CCTC 3 cut(s) 253, 306, 320
MslI CAYNNNNRTG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 3 cut(s) 170, 177, 243
NmuCI GTSAC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 3 cut(s) 141, 198, 332
PkrI GCNGC 1 cut(s) 280
Ple19I CGATCG 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 209
PvuI CGATCG 1 cut(s) 180
RgaI GCGATCGC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 83
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 3 cut(s) 170, 177, 243
SetI ASST 4 cut(s) 11, 26, 65, 241
SfaAI GCGATCGC 1 cut(s) 180
SfaNI GCATC 1 cut(s) 196
SgeI CNNG 7 cut(s) 91, 148, 180, 222, 243, 299, 323
SgfI GCGATCGC 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 1 cut(s) 263
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 3 cut(s) 89, 169, 204
TasI AATT 1 cut(s) 263
TfiI GAWTC 3 cut(s) 141, 198, 332
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 190, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.