Rh4BG126900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012213
Physical Location & Seq
Reverse (-)
21180349 .. 21202904
22556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG126900.1

Sequence Viewer

Length: 429 bp
ATGTTTGTGGCAGAAAAAAGCGCCATCTTTAACAAGCTCTCCCCCTATCTGTTTGTGAAGAAAAATGGCAGAGAATTCGGAACCATATTAGCTAAAAGGAGAGATTTGCCACCTGAAAATCCAAGTACTCAAGGAGGAAAATTCGTCTTCCCCCCATTGAGGGTTTCGAATACAATTCTTGCTAGGTCTGTGGTGGCTGTGTTGGGATTAGGATTCATCGATGCAGGCTTCAAGCACATGTGCAGCCATCCCATTTTGAGCAAATTGCCCAATGGTTCAAATTTTAAGACGAGTAGTGTGGCGGACGGAGATTTTTTCAAGTTGTGGAAGAGAAGTAGTTGTTTATTCGATACATTCAATTTTGGAAGTCATAAGTATCATCGTTCAATAAAGACAGTTAGAATTAGTTCCAAGGAAGAGAGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.91

Weight (kDa)

10.22

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7887 PF25397 55 - 77 7.3e-07 Domain of unknown function (DUF7887)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012213)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30845
fragaria_vesca FvH4_4g09760 FvH4_4g09760
malus_domestica MD04G1182900.v1.1 MD12G1196500.v1.1
prunus_persica Prupe.1G101900_v2.0.a1
pyrus_communis pycom04g16060 pycom12g18270
rosa_chinensis RchiOBHm_Chr4g0405451
rosa_laevigata RLG00000008841
rosa_multiflora Rmu_sc0000575.1_g000021
rosa_roxburghii Rroxscaffold_5G00349920
rosa_rugosa Rorug04G0060300 Rorug04G0060400
rosa_samantha Rh4AG132000 Rh4BG126900 Rh4CG139400 Rh4DG126000
rosa_wichuraiana Rw4G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 302
AcsI RAATTY 3 cut(s) 74, 140, 280
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 2 cut(s) 159, 160
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 5 cut(s) 232, 279, 319, 358, 387
AluBI AGCT 3 cut(s) 37, 92, 425
AluI AGCT 3 cut(s) 37, 92, 425
ApeKI GCWGC 1 cut(s) 243
ApoI RAATTY 3 cut(s) 74, 140, 280
Asp700I GAANNNNTTC 1 cut(s) 406
AspLEI GCGC 1 cut(s) 23
AsuII TTCGAA 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 255
BccI CCATC 2 cut(s) 32, 255
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BfaI CTAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
BmcAI AGTACT 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 139
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 411
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 160
BseCI ATCGAT 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 159, 160
BseXI GCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 262
BshVI ATCGAT 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 159, 160
Bsp119I TTCGAA 1 cut(s) 167
BspACI CCGC 1 cut(s) 302
BspDI ATCGAT 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 411
BssT1I CCWWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 2 cut(s) 323, 411
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 139
Bsu15I ATCGAT 1 cut(s) 219
BsuTUI ATCGAT 1 cut(s) 219
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 226
CfoI GCGC 1 cut(s) 23
ClaI ATCGAT 1 cut(s) 219
Csp6I GTAC 1 cut(s) 126
CviAII CATG 1 cut(s) 238
CviJI RGCY 6 cut(s) 37, 92, 197, 228, 246, 425
CviKI_1 RGCY 6 cut(s) 37, 92, 197, 228, 246, 425
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 1 cut(s) 426
Eam1104I CTCTTC 2 cut(s) 323, 411
EarI CTCTTC 2 cut(s) 323, 411
EciI GGCGGA 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 1 cut(s) 241
FaiI YATR 3 cut(s) 86, 239, 372
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 1 cut(s) 183
GlaI GCGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 244
HaeII RGCGCY 1 cut(s) 24
HhaI GCGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 241
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4V TGCA 2 cut(s) 224, 243
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 1 cut(s) 241
HspAI GCGC 1 cut(s) 21
LpnPI CCDG 2 cut(s) 126, 210
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 183
MboII GAAGA 4 cut(s) 70, 139, 340, 428
MluCI AATT 7 cut(s) 74, 140, 174, 263, 280, 358, 402
MnlI CCTC 2 cut(s) 128, 153
MroXI GAANNNNTTC 1 cut(s) 406
MseI TTAA 2 cut(s) 30, 285
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 82
NspI RCATGY 1 cut(s) 241
NspV TTCGAA 1 cut(s) 167
PciI ACATGT 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 213
PkrI GCNGC 1 cut(s) 245
PscI ACATGT 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 82
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 30, 285
SatI GCNGC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 127
SetI ASST 5 cut(s) 39, 94, 115, 188, 427
SfaNI GCATC 1 cut(s) 211
SfuI TTCGAA 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 7 cut(s) 74, 140, 174, 263, 280, 358, 402
SsiI CCGC 1 cut(s) 302
SspMI CTAG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 397
TaqI TCGA 3 cut(s) 167, 219, 348
TasI AATT 7 cut(s) 74, 140, 174, 263, 280, 358, 402
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 2 cut(s) 30, 285
Tru9I TTAA 2 cut(s) 30, 285
TseI GCWGC 1 cut(s) 243
TspDTI ATGAA 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 321
XapI RAATTY 3 cut(s) 74, 140, 280
XceI RCATGY 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 406
XspI CTAG 1 cut(s) 183
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.