pycom04g16060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0012213
Physical Location & Seq
Forward (+)
18778006 .. 18778512
507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g16060.1

Sequence Viewer

Length: 357 bp
ATGCAACCAAAAAAATGTTGGTCGCAGAAACGAGCCTTGTCTTTGAAAGATATGTCTGAAGATTCGACGACGCCGGAAAACTTCATGTTCCCGTTGAGGGTCAGGGTTTCGAATACGGTTCTTCCTAGGGCTGCAGTTGCAGCGTTCGGGTTGCGATTCATTGATGCGGGATACAGTGGAGACTGGTCGAGGACTGGAGCCATCGCAAAAGAGAGTGAGGAGTTGCTCAAGGTAGCTGCATTTGTAGTTGTTCCCTTATGTTTGTTCTCATTTTTTTCTTTTCCAAAGAAGTTGAGGACTGAATTTTTAAGATGCGATTGTGTATACTTGGAAGTGTGGAATGAAATGATTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.49

Weight (kDa)

8.76

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7887 PF25397 36 - 96 2.6e-30 Domain of unknown function (DUF7887)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012213)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30845
fragaria_vesca FvH4_4g09760 FvH4_4g09760
malus_domestica MD04G1182900.v1.1 MD12G1196500.v1.1
prunus_persica Prupe.1G101900_v2.0.a1
pyrus_communis pycom04g16060 pycom12g18270
rosa_chinensis RchiOBHm_Chr4g0405451
rosa_laevigata RLG00000008841
rosa_multiflora Rmu_sc0000575.1_g000021
rosa_roxburghii Rroxscaffold_5G00349920
rosa_rugosa Rorug04G0060300 Rorug04G0060400
rosa_samantha Rh4AG132000 Rh4BG126900 Rh4CG139400 Rh4DG126000
rosa_wichuraiana Rw4G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AciI CCGC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 46
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 174
ApeKI GCWGC 3 cut(s) 131, 140, 236
ApoI RAATTY 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 348
AspA2I CCTAGG 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 110
AvrII CCTAGG 1 cut(s) 125
BbvI GCAGC 3 cut(s) 118, 152, 223
BccI CCATC 1 cut(s) 209
BciVI GTATCC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 132
BfuI GTATCC 1 cut(s) 164
BisI GCNGC 3 cut(s) 132, 141, 237
BlnI CCTAGG 1 cut(s) 125
BlsI GCNGC 3 cut(s) 133, 142, 238
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 2 cut(s) 154, 302
BpmI CTGGAG 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 2 cut(s) 188, 199
BseDI CCNNGG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 97
BseNI ACTGG 2 cut(s) 188, 199
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 3 cut(s) 118, 152, 223
BsiSI CCGG 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 174
Bsp119I TTCGAA 1 cut(s) 110
BspACI CCGC 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 199
BspMAI CTGCAG 1 cut(s) 136
BspT104I TTCGAA 1 cut(s) 110
BsrI ACTGG 2 cut(s) 188, 199
BssECI CCNNGG 1 cut(s) 125
BssNAI GTATAC 1 cut(s) 325
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 125
Bst1107I GTATAC 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 118, 176
BstACI GRCGYC 1 cut(s) 71
BstBI TTCGAA 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 137, 140
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 118, 152, 223
BstZ17I GTATAC 1 cut(s) 325
BsuI GTATCC 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 181
CseI GACGC 1 cut(s) 79
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 35, 131, 200, 236
CviKI_1 RGCY 4 cut(s) 35, 131, 200, 236
Eco130I CCWWGG 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 1 cut(s) 88
FaiI YATR 4 cut(s) 53, 86, 259, 325
FatI CATG 1 cut(s) 84
FauI CCCGC 1 cut(s) 160
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 3 cut(s) 132, 141, 237
Fsp4HI GCNGC 3 cut(s) 132, 141, 237
FspBI CTAG 1 cut(s) 126
GluI GCNGC 3 cut(s) 132, 141, 237
GsuI CTGGAG 1 cut(s) 216
HapII CCGG 1 cut(s) 74
HgaI GACGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 1 cut(s) 88
HinfI GANTC 3 cut(s) 62, 156, 349
HpaII CCGG 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 58, 356
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 2 cut(s) 70, 73
HpyCH4III ACNGT 2 cut(s) 118, 176
HpyCH4V TGCA 4 cut(s) 4, 134, 140, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 140
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 88
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 4 cut(s) 87, 88, 169, 180
Lsp1109I GCAGC 3 cut(s) 118, 152, 223
LweI GCATC 2 cut(s) 154, 302
MaeI CTAG 1 cut(s) 126
MboII GAAGA 2 cut(s) 71, 113
MluCI AATT 1 cut(s) 302
MnlI CCTC 4 cut(s) 90, 183, 211, 288
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 1 cut(s) 308
MspI CCGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 137, 140
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 199
NspV TTCGAA 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 3 cut(s) 62, 156, 349
PkrI GCNGC 3 cut(s) 133, 142, 238
PspN4I GGNNCC 1 cut(s) 199
PstI CTGCAG 1 cut(s) 136
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 3 cut(s) 132, 141, 237
SetI ASST 2 cut(s) 234, 238
SfaNI GCATC 2 cut(s) 154, 302
SfcI CTRYAG 1 cut(s) 132
SfuI TTCGAA 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 302
SsiI CCGC 1 cut(s) 167
SspMI CTAG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 2 cut(s) 118, 176
TaqI TCGA 3 cut(s) 65, 110, 188
TasI AATT 1 cut(s) 302
TfiI GAWTC 3 cut(s) 62, 156, 349
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 1 cut(s) 181
TseI GCWGC 3 cut(s) 131, 140, 236
TspDTI ATGAA 3 cut(s) 73, 148, 357
TspRI CASTG 1 cut(s) 181
XapI RAATTY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 15
XmaJI CCTAGG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.