Rorug04G0060400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
9450600 .. 9451073
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0060400.1

Sequence Viewer

Length: 474 bp
ATGCTCATTTTGGGTCCAAACAGAACTAATTTGCAGAATGCCAAGACAATGGTGGCCTCTTGTTCTGGAGCTGCTGTGTCCAGAATGCCAATGAAGGATGTCTTTAACAATATGGGCAGCCATAGTGGAGTGAAATCCACTTTTCAATATCAAAGGAAATCCAAGGGCCTCACCACTCCTACCAACAAACATCAATCTCATATTTTCAAAAAACTCTCTTTTGAAAATAATGAGGTTGCTGTGTTTGGTAATGGGATTTCAGCTATATTTGGTCACTGCCCTCCTGAGGAAAGAACTGGGGCTTGTGGCTTGCAAATTAATTCTAACCAGTACAGTGATGTTGTTATTGATGCTTCTTCTGCAATTGAAGACGATTCTGACAAGTTTACTGAAATGACTTTTGTTGCTAATAGCTTGTTAACCAATGAGGATTGCTTGCCTTCCAATACCTTGGAAGGTATGGTTGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.0

Weight (kDa)

5.75

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012213)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 4 cut(s) 146, 208, 224, 368
AluBI AGCT 3 cut(s) 71, 263, 414
AluI AGCT 3 cut(s) 71, 263, 414
AoxI GGCC 2 cut(s) 54, 166
ApeKI GCWGC 2 cut(s) 71, 117
AseI ATTAAT 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 14, 166
AsuHPI GGTGA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 14
AxyI CCTNAGG 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 58, 129
BisI GCNGC 2 cut(s) 72, 118
BlsI GCNGC 2 cut(s) 73, 119
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 2 cut(s) 14, 166
BmiI GGNNCC 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 340, 457
BmuI ACTGGG 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 162, 450
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 301, 328
Bse21I CCTNAGG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 162, 450
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 2 cut(s) 301, 328
BseXI GCAGC 2 cut(s) 58, 129
BshFI GGCC 2 cut(s) 56, 168
BslI CCNNNNNNNGG 1 cut(s) 286
BsmI GAATGC 2 cut(s) 43, 90
BsnI GGCC 2 cut(s) 56, 168
BspANI GGCC 2 cut(s) 56, 168
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 15
BsrI ACTGG 2 cut(s) 301, 328
BssECI CCNNGG 2 cut(s) 162, 450
BssT1I CCWWGG 2 cut(s) 162, 450
Bst4CI ACNGT 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 311, 437
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstV1I GCAGC 2 cut(s) 58, 129
BstV2I GAAGAC 1 cut(s) 375
BstXI CCANNNNNNTGG 2 cut(s) 49, 451
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 56, 168
BtsCI GGATG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 2 cut(s) 274, 340
Cac8I GCNNGC 2 cut(s) 311, 437
Cfr13I GGNCC 2 cut(s) 14, 166
Csp6I GTAC 1 cut(s) 331
CviJI RGCY 8 cut(s) 56, 71, 120, 168, 263, 302, 309, 414
CviKI_1 RGCY 8 cut(s) 56, 71, 120, 168, 263, 302, 309, 414
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 285
Eco130I CCWWGG 2 cut(s) 162, 450
Eco47I GGWCC 1 cut(s) 14
Eco81I CCTNAGG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 162, 450
ErhI CCWWGG 2 cut(s) 162, 450
FaiI YATR 5 cut(s) 113, 123, 201, 266, 461
FalI AAGNNNNNCTT 2 cut(s) 86, 118
Fnu4HI GCNGC 2 cut(s) 72, 118
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 2 cut(s) 72, 118
GluI GCNGC 2 cut(s) 72, 118
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 2 cut(s) 56, 168
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HinfI GANTC 1 cut(s) 374
HpaI GTTAAC 1 cut(s) 420
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 2 cut(s) 387, 420
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 3 cut(s) 66, 81, 284
Hpy8I GTNNAC 2 cut(s) 387, 420
HpyAV CCTTC 3 cut(s) 88, 449, 450
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4V TGCA 3 cut(s) 34, 313, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 285
KspAI GTTAAC 1 cut(s) 420
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 5 cut(s) 51, 94, 282, 297, 341
Lsp1109I GCAGC 2 cut(s) 58, 129
LweI GCATC 2 cut(s) 340, 457
MaeIII GTNAC 1 cut(s) 272
MboII GAAGA 2 cut(s) 348, 380
MfeI CAATTG 1 cut(s) 363
MluCI AATT 4 cut(s) 28, 315, 319, 363
MnlI CCTC 6 cut(s) 67, 179, 226, 280, 291, 421
MseI TTAA 3 cut(s) 105, 318, 419
MunI CAATTG 1 cut(s) 363
Mva1269I GAATGC 2 cut(s) 43, 90
MwoI GCNNNNNNNGC 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 272
PctI GAATGC 2 cut(s) 43, 90
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 73, 119
PshBI ATTAAT 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 2 cut(s) 14, 166
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SaqAI TTAA 3 cut(s) 105, 318, 419
SatI GCNGC 2 cut(s) 72, 118
Sau96I GGNCC 2 cut(s) 14, 166
SetI ASST 6 cut(s) 73, 237, 265, 416, 452, 460
SfaNI GCATC 2 cut(s) 340, 457
SinI GGWCC 1 cut(s) 14
Sse9I AATT 4 cut(s) 28, 315, 319, 363
StyI CCWWGG 2 cut(s) 162, 450
TaaI ACNGT 1 cut(s) 335
TasI AATT 4 cut(s) 28, 315, 319, 363
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 3 cut(s) 105, 318, 419
Tru9I TTAA 3 cut(s) 105, 318, 419
TscAI CASTG 2 cut(s) 281, 340
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 2 cut(s) 71, 117
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 2 cut(s) 281, 340
VpaK11BI GGWCC 1 cut(s) 14
VspI ATTAAT 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.