FvH4_4g09760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012213
Physical Location & Seq
Reverse (-)
11663541 .. 11667220
3680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09760.t2

Sequence Viewer

Length: 360 bp
ATGTTTGTGGCAGGAAAGAGCCTCATCTTTAACAAGCTCTGGCTCTCTCTGTTTGTCAAGAAAAATGGCAGAGACTTGGGAACCATAATGGCCAAGAGGAGAGATTTGCCTACTGAAATCTCGAGTACCCAAGAGGGGGGATTTGTGTTTCCCCGATTGAGGGTTTCGAATACAATTGTGGCTAGGTCTGTGGTGGCAGTGTTGGGACTAGGATTCATCGATGCAGGGTATAGTGGAGACTGGTCAAGGTTTGGAGTGATCTCAAAAGAGAGTGAGGACTTGCTAAAGGTTGCTGCATTTCTAGTTGTTCCCTTGTGTTTGTTCCTCATATTTTCTATCTCCAAACAACATGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.18

Weight (kDa)

9.51

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7887 PF25397 55 - 116 6.4e-36 Domain of unknown function (DUF7887)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012213)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30845
fragaria_vesca FvH4_4g09760 FvH4_4g09760
malus_domestica MD04G1182900.v1.1 MD12G1196500.v1.1
prunus_persica Prupe.1G101900_v2.0.a1
pyrus_communis pycom04g16060 pycom12g18270
rosa_chinensis RchiOBHm_Chr4g0405451
rosa_laevigata RLG00000008841
rosa_multiflora Rmu_sc0000575.1_g000021
rosa_roxburghii Rroxscaffold_5G00349920
rosa_rugosa Rorug04G0060300 Rorug04G0060400
rosa_samantha Rh4AG132000 Rh4BG126900 Rh4CG139400 Rh4DG126000
rosa_wichuraiana Rw4G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 90
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 4 cut(s) 135, 136, 159, 160
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 2 cut(s) 66, 231
Ama87I CYCGRG 1 cut(s) 121
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 121
BalI TGGCCA 1 cut(s) 92
BbvI GCAGC 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 66, 231
BfaI CTAG 3 cut(s) 183, 209, 302
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 1 cut(s) 211
Bpu14I TTCGAA 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 219
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 136, 159, 160
Bse1I ACTGG 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 219
BseLI CCNNNNNNNGG 4 cut(s) 135, 136, 159, 160
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 121
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 4 cut(s) 135, 136, 159, 160
BsmAI GTCTC 2 cut(s) 66, 231
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 167
Bsp143I GATC 1 cut(s) 258
BspANI GGCC 1 cut(s) 92
BspDI ATCGAT 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 167
BsrI ACTGG 1 cut(s) 245
BssMI GATC 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 167
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 2 cut(s) 66, 231
BstMBI GATC 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 280
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 1 cut(s) 92
BsuTUI ATCGAT 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
ClaI ATCGAT 1 cut(s) 219
Csp6I GTAC 1 cut(s) 126
CviAII CATG 1 cut(s) 350
CviJI RGCY 5 cut(s) 21, 37, 43, 92, 182
CviKI_1 RGCY 5 cut(s) 21, 37, 43, 92, 182
CviQI GTAC 1 cut(s) 126
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 121
FaeI CATG 1 cut(s) 353
FaiI YATR 4 cut(s) 86, 231, 329, 351
FaqI GGGAC 1 cut(s) 219
FatI CATG 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 3 cut(s) 183, 209, 302
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 1 cut(s) 92
Hin1II CATG 1 cut(s) 353
HinfI GANTC 1 cut(s) 213
Hpy188III TCNNGA 2 cut(s) 58, 121
HpyCH4V TGCA 2 cut(s) 224, 296
Hsp92II CATG 1 cut(s) 353
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 3 cut(s) 25, 210, 226
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 211
MaeI CTAG 3 cut(s) 183, 209, 302
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MfeI CAATTG 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 1 cut(s) 174
MluNI TGGCCA 1 cut(s) 92
MnlI CCTC 7 cut(s) 32, 90, 127, 153, 268, 335, 346
Mox20I TGGCCA 1 cut(s) 92
MscI TGGCCA 1 cut(s) 92
MseI TTAA 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 92
MunI CAATTG 1 cut(s) 174
NdeII GATC 1 cut(s) 258
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 121
PfeI GAWTC 1 cut(s) 213
PkrI GCNGC 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 82
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 1 cut(s) 258
SetI ASST 4 cut(s) 39, 188, 251, 291
SfaNI GCATC 1 cut(s) 211
Sfr274I CTCGAG 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 167
SlaI CTCGAG 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 1 cut(s) 174
SspMI CTAG 3 cut(s) 183, 209, 302
TaqI TCGA 3 cut(s) 122, 167, 219
TasI AATT 1 cut(s) 174
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 204
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 205
TspRI CASTG 1 cut(s) 204
XhoI CTCGAG 1 cut(s) 121
XspI CTAG 3 cut(s) 183, 209, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.