MD12G1196500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0012213
Physical Location & Seq
Forward (+)
27771874 .. 27772254
381 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1196500.v1.1.491

Sequence Viewer

Length: 381 bp
ATGTTGGTCGCAGAAAAGAGCCTTATCTTTAGCAGTAGCCGCAACCTCTCACCTTATCTGTTGCTGAAGAGAAAAAATGGCAGGGAATTTGGAAGCACATTCTTATTAGCCAAAAGGAAAGATATGCCTGAAGATTCGAGGACATTGCCGGAACAACAGTTGGTCTTTCCGTTGAGGATTCGGGTTTCGAACACGGTTCTTGCGAGGGCTGCGGTTGCGGTGTTCGGGTTGGGATTCATCGATGCAGGATACAGTGGAGATTGGTCGAGGATTGGAGCGATTTCAAAAGAGAGTGAGGAGTTGCTGAAGATTTCTGCATTTCTTGTCGTTCCGTTTTGCTTGTTTCTCATATTTTCCTTCTCTAAAGAAGCTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.11

Weight (kDa)

9.2

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7887 PF25397 62 - 123 5e-36 Domain of unknown function (DUF7887)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012213)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30845
fragaria_vesca FvH4_4g09760 FvH4_4g09760
malus_domestica MD04G1182900.v1.1 MD12G1196500.v1.1
prunus_persica Prupe.1G101900_v2.0.a1
pyrus_communis pycom04g16060 pycom12g18270
rosa_chinensis RchiOBHm_Chr4g0405451
rosa_laevigata RLG00000008841
rosa_multiflora Rmu_sc0000575.1_g000021
rosa_roxburghii Rroxscaffold_5G00349920
rosa_rugosa Rorug04G0060300 Rorug04G0060400
rosa_samantha Rh4AG132000 Rh4BG126900 Rh4CG139400 Rh4DG126000
rosa_wichuraiana Rw4G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 40, 212, 218
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 3 cut(s) 86, 150, 326
AgsI TTSAA 1 cut(s) 285
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 42
AsuII TTCGAA 1 cut(s) 188
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciVI GTATCC 1 cut(s) 242
BfuI GTATCC 1 cut(s) 242
BisI GCNGC 2 cut(s) 40, 210
BlsI GCNGC 2 cut(s) 41, 211
BmsI GCATC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 188
Bsa29I ATCGAT 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 240
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 363
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 240
BsiSI CCGG 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 188
BspACI CCGC 3 cut(s) 40, 212, 218
BspCNI CTCAG 1 cut(s) 364
BspDI ATCGAT 1 cut(s) 240
BspT104I TTCGAA 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 143
Bst4CI ACNGT 3 cut(s) 159, 196, 254
Bst6I CTCTTC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 372
BstMWI GCNNNNNNNGC 3 cut(s) 39, 209, 215
BstV1I GCAGC 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 240
BsuI GTATCC 1 cut(s) 242
BsuTUI ATCGAT 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 259
ClaI ATCGAT 1 cut(s) 240
CviJI RGCY 5 cut(s) 21, 39, 110, 209, 371
CviKI_1 RGCY 5 cut(s) 21, 39, 110, 209, 371
DdeI CTNAG 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco57I CTGAAG 3 cut(s) 86, 150, 326
FaiI YATR 2 cut(s) 125, 350
Fnu4HI GCNGC 2 cut(s) 40, 210
Fsp4HI GCNGC 2 cut(s) 40, 210
GluI GCNGC 2 cut(s) 40, 210
HapII CCGG 1 cut(s) 149
HinfI GANTC 3 cut(s) 134, 178, 234
HpaII CCGG 1 cut(s) 149
HphI GGTGA 1 cut(s) 42
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 3 cut(s) 159, 196, 254
HpyCH4V TGCA 2 cut(s) 245, 317
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 209, 215
HpyF3I CTNAG 1 cut(s) 372
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 4 cut(s) 67, 141, 162, 231
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 232
MboII GAAGA 3 cut(s) 79, 143, 319
MluCI AATT 1 cut(s) 86
MnlI CCTC 7 cut(s) 56, 132, 168, 198, 261, 289, 367
MspI CCGG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 39, 209, 215
NspV TTCGAA 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PfeI GAWTC 3 cut(s) 134, 178, 234
PkrI GCNGC 2 cut(s) 41, 211
SatI GCNGC 2 cut(s) 40, 210
SetI ASST 3 cut(s) 48, 55, 373
SfaNI GCATC 1 cut(s) 232
SfuI TTCGAA 1 cut(s) 188
Sse9I AATT 1 cut(s) 86
SsiI CCGC 3 cut(s) 40, 212, 218
TaaI ACNGT 3 cut(s) 159, 196, 254
TaqI TCGA 4 cut(s) 137, 188, 240, 266
TasI AATT 1 cut(s) 86
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 3 cut(s) 134, 178, 234
TscAI CASTG 1 cut(s) 259
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 226
TspGWI ACGGA 2 cut(s) 159, 321
TspRI CASTG 1 cut(s) 259
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.