MD04G1182900.v1.1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0012213
Physical Location & Seq
Forward (+)
27403352 .. 27403564
213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1182900.v1.1.491

Sequence Viewer

Length: 213 bp
ATGTCTGAAGATTCAACGACGCCGGAAAACTTCACGTTCCTTAGGGCTGCGGTTGCAGCGTTCAGGTTGGGATTCATCGATGCGGGATACAGTGGAGACTGGTCGAGGATTGGAGCCATCTCAAAAGAGAGTGAGGAGTTGCTCAAGGTTGCTGCATTTCTAGTTGTTCCCTTATGTTTGTTTCTCATTTTTTTCTTTCTCCAAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230
Pfam Domains
Protein Families
DUF4283

Protein Analysis

71

Amino Acids

7.81

Weight (kDa)

4.81

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7887 PF25397 12 - 68 3.5e-33 Domain of unknown function (DUF7887)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012213)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30845
fragaria_vesca FvH4_4g09760 FvH4_4g09760
malus_domestica MD04G1182900.v1.1 MD12G1196500.v1.1
prunus_persica Prupe.1G101900_v2.0.a1
pyrus_communis pycom04g16060 pycom12g18270
rosa_chinensis RchiOBHm_Chr4g0405451
rosa_laevigata RLG00000008841
rosa_multiflora Rmu_sc0000575.1_g000021
rosa_roxburghii Rroxscaffold_5G00349920
rosa_rugosa Rorug04G0060300 Rorug04G0060400
rosa_samantha Rh4AG132000 Rh4BG126900 Rh4CG139400 Rh4DG126000
rosa_wichuraiana Rw4G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 83
AcuI CTGAAG 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 90
ApeKI GCWGC 3 cut(s) 47, 56, 152
AxyI CCTNAGG 1 cut(s) 41
BbvI GCAGC 3 cut(s) 34, 68, 139
BccI CCATC 1 cut(s) 125
BciVI GTATCC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 1 cut(s) 161
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 3 cut(s) 48, 57, 153
BlsI GCNGC 3 cut(s) 49, 58, 154
BmiI GGNNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 104
Bse21I CCTNAGG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 78
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 3 cut(s) 34, 68, 139
BshVI ATCGAT 1 cut(s) 78
BsiSI CCGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 90
BspACI CCGC 2 cut(s) 50, 83
BspDI ATCGAT 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 115
BsrI ACTGG 1 cut(s) 104
BssNI GRCGYC 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 53, 56
BstV1I GCAGC 3 cut(s) 34, 68, 139
Bsu15I ATCGAT 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 41
BsuI GTATCC 1 cut(s) 80
BsuTUI ATCGAT 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 97
ClaI ATCGAT 1 cut(s) 78
CseI GACGC 1 cut(s) 28
CviJI RGCY 2 cut(s) 47, 116
CviKI_1 RGCY 2 cut(s) 47, 116
DdeI CTNAG 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 27
Eco81I CCTNAGG 1 cut(s) 41
FaiI YATR 1 cut(s) 175
FauI CCCGC 1 cut(s) 76
Fnu4HI GCNGC 3 cut(s) 48, 57, 153
Fsp4HI GCNGC 3 cut(s) 48, 57, 153
FspBI CTAG 1 cut(s) 161
GluI GCNGC 3 cut(s) 48, 57, 153
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 20
HinfI GANTC 2 cut(s) 11, 72
HpaII CCGG 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 56, 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 56
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 3 cut(s) 36, 49, 85
Lsp1109I GCAGC 3 cut(s) 34, 68, 139
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 35
MboII GAAGA 1 cut(s) 20
MnlI CCTC 2 cut(s) 99, 127
MspI CCGG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 53, 56
NlaIV GGNNCC 1 cut(s) 115
PfeI GAWTC 2 cut(s) 11, 72
PkrI GCNGC 3 cut(s) 49, 58, 154
PspN4I GGNNCC 1 cut(s) 115
SatI GCNGC 3 cut(s) 48, 57, 153
SetI ASST 3 cut(s) 38, 68, 150
SfaNI GCATC 1 cut(s) 70
SgeI CNNG 8 cut(s) 35, 46, 76, 96, 112, 117, 157, 173
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SsiI CCGC 2 cut(s) 50, 83
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 78, 104
TfiI GAWTC 2 cut(s) 11, 72
TscAI CASTG 1 cut(s) 97
TseI GCWGC 3 cut(s) 47, 56, 152
TspDTI ATGAA 1 cut(s) 64
TspRI CASTG 1 cut(s) 97
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.