AT4G31060

AP2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016190
Physical Location & Seq
Forward (+)
15116148 .. 15117756
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31060.1

Sequence Viewer

Length: 564 bp
ATGCCACCCTCTCCTCCTAAATCTCCTTTTATTAGCTCTTCACTCAAAGGAGCTCATGAAGATCGCAAATTTAAATGCTATAGGGGTGTCCGAAAGAGGTCTTGGGGCAAATGGGTGTCTGAAATCAGAGTTCCAAAGACTGGACGACGAATATGGCTAGGTTCATACGATGCTCCAGAGAAGGCAGCTAGAGCCTATGATGCTGCTTTGTTCTGTATTAGGGGTGAGAAGGGAGTTTACAATTTTCCCACTGATAAAAAGCCGCAGCTTCCAGAAGGTTCTGTCCGGCCTCTGTCCAAGCTCGACATACAGACAATAGCAACAAACTATGCTTCATCAGTTGTGCATGTACCTTCCCATGCCACCACACTCCCGGCAACAACCCAGGTTCCCTCTGAAGTTCCTGCTTCCTCTGATGTTTCTGCTTCTACTGAGATTACAGAGATGGTCGATGAATATTATCTCCCAACCGATGCAACTGCAGAATCAATATTCTCAGTTGAAGACTTACAACTGGACAGTTTCCTCATGATGGACATTGATTGGATAAACAATCTAATCTGA

Protein Analysis

187

Amino Acids

20.81

Weight (kDa)

6.31

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 26 - 75 4.2e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31060
fragaria_vesca FvH4_5g34550
malus_domestica MD04G1001700.v1.1
prunus_persica Prupe.1G001700_v2.0.a1
pyrus_communis pycom04g00230
rosa_chinensis RchiOBHm_Chr7g0235201
rosa_laevigata RLG00000001173
rosa_multiflora Rmu_sc0003211.1_g000026 Rmu_sc0004657.1_g000024
rosa_roxburghii Rroxscaffold_3G00226180
rosa_rugosa Rorug07G0289100
rosa_samantha Rh7AG443600 Rh7CG464800 Rh7DG433100
rosa_wichuraiana Rw7G036880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 140
AciI CCGC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 2 cut(s) 140, 532
AgsI TTSAA 1 cut(s) 503
AjnI CCWGG 1 cut(s) 384
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 5 cut(s) 36, 53, 188, 268, 301
AluI AGCT 5 cut(s) 36, 53, 188, 268, 301
Alw21I GWGCWC 1 cut(s) 55
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 3 cut(s) 185, 203, 265
ApoI RAATTY 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 236
BanII GRGCYC 1 cut(s) 55
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 3 cut(s) 190, 197, 277
BccI CCATC 2 cut(s) 439, 526
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciT130I CCWGG 1 cut(s) 386
BcnI CCSGG 1 cut(s) 374
BfaI CTAG 2 cut(s) 158, 189
BfmI CTRYAG 2 cut(s) 79, 480
BisI GCNGC 4 cut(s) 186, 204, 263, 266
BlsI GCNGC 4 cut(s) 187, 205, 264, 267
Bme1390I CCNGG 2 cut(s) 374, 386
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 2 cut(s) 374, 386
BmsI GCATC 3 cut(s) 160, 190, 463
BpiI GAAGAC 1 cut(s) 510
BpmI CTGGAG 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 384
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 532
Bse1I ACTGG 2 cut(s) 145, 519
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 384
BseLI CCNNNNNNNGG 2 cut(s) 140, 532
BseMII CTCAG 2 cut(s) 423, 510
BseNI ACTGG 2 cut(s) 145, 519
BseXI GCAGC 3 cut(s) 190, 197, 277
BshFI GGCC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 2 cut(s) 286, 374
BslI CCNNNNNNNGG 2 cut(s) 140, 532
BsnI GGCC 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 424, 509
BspHI TCATGA 2 cut(s) 55, 528
BspLI GGNNCC 1 cut(s) 390
BspMAI CTGCAG 1 cut(s) 484
BspQI GCTCTTC 1 cut(s) 43
BsrI ACTGG 2 cut(s) 145, 519
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 1 cut(s) 521
Bst6I CTCTTC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 432, 496
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 2 cut(s) 191, 200
BstNI CCWGG 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 372, 384
BstSFI CTRYAG 2 cut(s) 79, 480
BstV1I GCAGC 3 cut(s) 190, 197, 277
BstV2I GAAGAC 1 cut(s) 510
BsuRI GGCC 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 249
CciI TCATGA 2 cut(s) 55, 528
Csp6I GTAC 1 cut(s) 350
CviAII CATG 4 cut(s) 56, 347, 359, 529
CviJI RGCY 9 cut(s) 36, 53, 157, 188, 194, 262, 268, 289, 301
CviKI_1 RGCY 9 cut(s) 36, 53, 157, 188, 194, 262, 268, 289, 301
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 2 cut(s) 432, 496
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
DraI TTTAAA 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 417
EcoICRI GAGCTC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 55
FaeI CATG 4 cut(s) 59, 350, 362, 532
FatI CATG 4 cut(s) 55, 346, 358, 528
Fnu4HI GCNGC 4 cut(s) 186, 204, 263, 266
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 4 cut(s) 186, 204, 263, 266
FspBI CTAG 2 cut(s) 158, 189
GluI GCNGC 4 cut(s) 186, 204, 263, 266
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 289
HapII CCGG 2 cut(s) 286, 374
Hin1II CATG 4 cut(s) 59, 350, 362, 532
HinfI GANTC 1 cut(s) 485
HpaII CCGG 2 cut(s) 286, 374
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 6 cut(s) 92, 121, 128, 397, 415, 563
Hpy188III TCNNGA 4 cut(s) 56, 176, 272, 529
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 150
HpyAV CCTTC 4 cut(s) 175, 223, 269, 363
HpyCH4III ACNGT 1 cut(s) 521
HpyCH4V TGCA 3 cut(s) 346, 476, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 200
HpyF3I CTNAG 2 cut(s) 432, 496
Hsp92II CATG 4 cut(s) 59, 350, 362, 532
Kzo9I GATC 1 cut(s) 61
LguI GCTCTTC 1 cut(s) 43
LmnI GCTCC 2 cut(s) 50, 178
LpnPI CCDG 9 cut(s) 126, 189, 285, 299, 371, 387, 398, 417, 500
Lsp1109I GCAGC 3 cut(s) 190, 197, 277
LweI GCATC 3 cut(s) 160, 190, 463
MaeI CTAG 2 cut(s) 158, 189
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 3 cut(s) 30, 71, 515
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 2 cut(s) 68, 241
MnlI CCTC 7 cut(s) 19, 24, 90, 300, 403, 421, 536
MseI TTAA 1 cut(s) 72
MspI CCGG 2 cut(s) 286, 374
MspR9I CCNGG 2 cut(s) 374, 386
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 191, 200
NciI CCSGG 1 cut(s) 374
NdeII GATC 1 cut(s) 61
NlaIII CATG 4 cut(s) 59, 350, 362, 532
NlaIV GGNNCC 1 cut(s) 390
NspI RCATGY 1 cut(s) 350
PagI TCATGA 2 cut(s) 55, 528
PciSI GCTCTTC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 485
PflMI CCANNNNNTGG 1 cut(s) 140
PkrI GCNGC 4 cut(s) 187, 205, 264, 267
Psp124BI GAGCTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 390
PstI CTGCAG 1 cut(s) 484
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SacI GAGCTC 1 cut(s) 55
SapI GCTCTTC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 4 cut(s) 186, 204, 263, 266
Sau3AI GATC 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 374, 386
SduI GDGCHC 1 cut(s) 55
SfaNI GCATC 3 cut(s) 160, 190, 463
SfcI CTRYAG 2 cut(s) 79, 480
SmiI ATTTAAAT 1 cut(s) 73
Sse9I AATT 2 cut(s) 68, 241
SsiI CCGC 1 cut(s) 263
SspI AATATT 2 cut(s) 458, 492
SspMI CTAG 2 cut(s) 158, 189
SstI GAGCTC 1 cut(s) 55
StyD4I CCNGG 2 cut(s) 372, 384
SwaI ATTTAAAT 1 cut(s) 73
TaaI ACNGT 1 cut(s) 521
TaqI TCGA 2 cut(s) 303, 450
TasI AATT 2 cut(s) 68, 241
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 256
TseI GCWGC 3 cut(s) 185, 203, 265
TspDTI ATGAA 4 cut(s) 72, 153, 324, 468
TspRI CASTG 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 350
XspI CTAG 2 cut(s) 158, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.